Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Verticillium_20longisporum_20[genbank_20GCA_5F001268145.1_202015-08- 07] 28,081 sequences; 99,189,222 total letters Query= AAMG01000911.1 Length=280 Score E Sequences producing significant alignments: (Bits) Value seq5557 188 1e-45 seq16224 158 2e-36 >seq5557 Length=585122 Score = 188 bits (208), Expect = 1e-45 Identities = 181/231 (78%), Gaps = 1/231 (0%) Strand=Plus/Plus Query 1 TACTCGGTGGCTCCGTCAGTGTAGCGCGCGTGCGGCCCAGAACATCTAAGGGCATCACAG 60 |||||| | || |||| |||||| |||||||||||| |||| |||||||||||| | || Sbjct 383523 TACTCGCTAGCCCCGTTAGTGTAATGCGCGTGCGGCCTAGAATATCTAAGGGCATTATAG 383582 Query 61 ACCTGTTATTGCCTCAAACTTCCATTGGCTGGAAGCCAATAGTCCCTCTAAGAAGCCAGC 120 |||| ||||||||| ||||||| ||| ||| | |||| ||||||| ||||||||| |||| Sbjct 383583 ACCTATTATTGCCTTAAACTTCTATTAGCTTG-AGCCGATAGTCCTTCTAAGAAGTCAGC 383641 Query 121 CACCAACCATAGTCGATGGGGCTATTTAGCAGGTTAAGGTCTCGTTCGTTATCGGAATTA 180 ||| || | ||||||| |||||||||||||||| |||||| ||||| Sbjct 383642 GTATTACCGGGGTAATATAGACTATTTAATAGGTTAAGGTCTCGTTTATTATCGTAATTA 383701 Query 181 ACCAGACAAATCACTCCACCAACTAAGAACGGCCATGCACCACCACCCATA 231 | ||| ||||||||| || ||||||||||||| || || || ||| ||| Sbjct 383702 AGTAGATAAATCACTCTACTAACTAAGAACGGCTATATACTACTACCTATA 383752 >seq16224 Length=81348 Score = 158 bits (174), Expect = 2e-36 Identities = 97/102 (95%), Gaps = 1/102 (1%) Strand=Plus/Plus Query 14 CGTCAGTGTAGCGCGCGTGCGGCCCAGAACATCTAAGGGCATCACAGACCTGTTATTGCC 73 |||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 75934 CGTCAGTGTAACGCGCGTGCGGCCCAGAACATCTAAGGGCATCACAGACCTGTTATTGCC 75993 Query 74 TCAAACTTCCATTGGCTGGAAGCCAATAGTCCCTCTAAGAAG 115 |||||||||||| |||| | |||| ||||||||||||||||| Sbjct 75994 TCAAACTTCCATCGGCTTG-AGCCGATAGTCCCTCTAAGAAG 76034 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 796583242761