Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Verticillium_20longisporum_20[genbank_20GCA_5F001268145.1_202015-08- 07] 28,081 sequences; 99,189,222 total letters Query= AAMG01000941.1 Length=299 Score E Sequences producing significant alignments: (Bits) Value seq16224 214 3e-53 seq17569 82.4 1e-13 >seq16224 Length=81348 Score = 214 bits (236), Expect = 3e-53 Identities = 124/128 (97%), Gaps = 0/128 (0%) Strand=Plus/Plus Query 147 CCGACATCGAAGGATCAAAAAGCAACGTCGCTATGAACGCTTGGCTGCCACAAGCCAGTT 206 ||||||||||||||||||||||| ||||||||||||||||||||| |||||||||||||| Sbjct 80392 CCGACATCGAAGGATCAAAAAGCGACGTCGCTATGAACGCTTGGCCGCCACAAGCCAGTT 80451 Query 207 ATCCCTGTGGTAACTTTTCTGGCACCTCTAGCCTCAAATTTCGAGGGACTAAAGGATCGA 266 |||||||||||||||||||||||||||||||||||||| | ||||||||||||||||||| Sbjct 80452 ATCCCTGTGGTAACTTTTCTGGCACCTCTAGCCTCAAACTCCGAGGGACTAAAGGATCGA 80511 Query 267 TAGGCCAC 274 |||||||| Sbjct 80512 TAGGCCAC 80519 >seq17569 Length=5207 Score = 82.4 bits (90), Expect = 1e-13 Identities = 58/65 (89%), Gaps = 1/65 (2%) Strand=Plus/Minus Query 1 TACTAAGCGGAATTACCATTGGGGCGACGGTCATCAGTAGGGTAAAACTAACCTGTCTCA 60 |||||||| ||||||||||| | ||| | |||||||||||||||||||||||||||||| Sbjct 4788 TACTAAGCTCAATTACCATTGCGACGA-GATCATCAGTAGGGTAAAACTAACCTGTCTCA 4730 Query 61 TGACG 65 |||| Sbjct 4729 CGACG 4725 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 854160075936