Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Verticillium_20longisporum_20[genbank_20GCA_5F001268145.1_202015-08-
07] 28,081 sequences; 99,189,222 total letters
Query= AAMG01001884.1
Length=191
Score E
Sequences producing significant alignments: (Bits) Value
seq5557 152 5e-35
seq16224 145 8e-33
>seq5557
Length=585122
Score = 152 bits (168), Expect = 5e-35
Identities = 146/186 (78%), Gaps = 1/186 (1%)
Strand=Plus/Minus
Query 1 GGAACCAGGACTTTTACTTTGAAAAAATTAGAGCGTTCAAAGCAGGCCTTTGCTCGAATA 60
|||| ||||| |||||||| |||||||||||| || | | |||| | | ||||||||
Sbjct 384222 GGAAATAGGACGTTTACTTTAAAAAAATTAGAGTACTCTAGGTAGGCTTATACTCGAATA 384163
Query 61 CATTACCATGGAATAATAGAATAGGACGTGCGGTTCTATTTTGTAGGTTTCTAGGACCGC 120
|||| || ||||||||||||||||||| || ||||| || ||||||||||||
Sbjct 384162 TATTAGTATAGAATAATAGAATAGGACGTATAGTCTTATTTCGTTAATTTCTAGGACCG- 384104
Query 121 CCGTAATGATAAATACGGATAGTCGGGGGTGTCAGTATTCAATTGTCAAAGGTGAAATTC 180
||||||| || |||| ||||| ||||||| | | |||| |||| | ||| |||||||||
Sbjct 384103 CCGTAATAATTAATAGGGATAATCGGGGGCATTAATATTTAATTATTAAAAGTGAAATTC 384044
Query 181 TTGGAT 186
|| |||
Sbjct 384043 TTAGAT 384038
>seq16224
Length=81348
Score = 145 bits (160), Expect = 8e-33
Identities = 103/117 (88%), Gaps = 1/117 (1%)
Strand=Plus/Minus
Query 70 GGAATAATAGAATAGGACGTGCGGTTCTATTTTGTAGGTTTCTAGGACCGCCCGTAATGA 129
|||||||| |||||||||||| ||| ||||| || |||||||||||||||| |||||||
Sbjct 65960 GGAATAATGGAATAGGACGTGTGGTCTTATTTCGTTGGTTTCTAGGACCGCC-GTAATGA 65902
Query 130 TAAATACGGATAGTCGGGGGTGTCAGTATTCAATTGTCAAAGGTGAAATTCTTGGAT 186
| |||| ||| ||||||||| |||||||||||| |||| |||||||||||||||||
Sbjct 65901 TTAATAGGGACAGTCGGGGGCATCAGTATTCAATCGTCAGAGGTGAAATTCTTGGAT 65845
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 511860718240
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |