Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Verticillium_20longisporum_20[genbank_20GCA_5F001268145.1_202015-08- 07] 28,081 sequences; 99,189,222 total letters Query= AAMG01001884.1 Length=191 Score E Sequences producing significant alignments: (Bits) Value seq5557 152 5e-35 seq16224 145 8e-33 >seq5557 Length=585122 Score = 152 bits (168), Expect = 5e-35 Identities = 146/186 (78%), Gaps = 1/186 (1%) Strand=Plus/Minus Query 1 GGAACCAGGACTTTTACTTTGAAAAAATTAGAGCGTTCAAAGCAGGCCTTTGCTCGAATA 60 |||| ||||| |||||||| |||||||||||| || | | |||| | | |||||||| Sbjct 384222 GGAAATAGGACGTTTACTTTAAAAAAATTAGAGTACTCTAGGTAGGCTTATACTCGAATA 384163 Query 61 CATTACCATGGAATAATAGAATAGGACGTGCGGTTCTATTTTGTAGGTTTCTAGGACCGC 120 |||| || ||||||||||||||||||| || ||||| || |||||||||||| Sbjct 384162 TATTAGTATAGAATAATAGAATAGGACGTATAGTCTTATTTCGTTAATTTCTAGGACCG- 384104 Query 121 CCGTAATGATAAATACGGATAGTCGGGGGTGTCAGTATTCAATTGTCAAAGGTGAAATTC 180 ||||||| || |||| ||||| ||||||| | | |||| |||| | ||| ||||||||| Sbjct 384103 CCGTAATAATTAATAGGGATAATCGGGGGCATTAATATTTAATTATTAAAAGTGAAATTC 384044 Query 181 TTGGAT 186 || ||| Sbjct 384043 TTAGAT 384038 >seq16224 Length=81348 Score = 145 bits (160), Expect = 8e-33 Identities = 103/117 (88%), Gaps = 1/117 (1%) Strand=Plus/Minus Query 70 GGAATAATAGAATAGGACGTGCGGTTCTATTTTGTAGGTTTCTAGGACCGCCCGTAATGA 129 |||||||| |||||||||||| ||| ||||| || |||||||||||||||| ||||||| Sbjct 65960 GGAATAATGGAATAGGACGTGTGGTCTTATTTCGTTGGTTTCTAGGACCGCC-GTAATGA 65902 Query 130 TAAATACGGATAGTCGGGGGTGTCAGTATTCAATTGTCAAAGGTGAAATTCTTGGAT 186 | |||| ||| ||||||||| |||||||||||| |||| ||||||||||||||||| Sbjct 65901 TTAATAGGGACAGTCGGGGGCATCAGTATTCAATCGTCAGAGGTGAAATTCTTGGAT 65845 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 511860718240