Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Verticillium_20longisporum_20[genbank_20GCA_5F001268145.1_202015-08- 07] 28,081 sequences; 99,189,222 total letters Query= AAMG01002186.1 Length=328 Score E Sequences producing significant alignments: (Bits) Value seq16224 349 7e-94 seq5557 233 4e-59 >seq16224 Length=81348 Score = 349 bits (386), Expect = 7e-94 Identities = 240/274 (88%), Gaps = 13/274 (5%) Strand=Plus/Minus Query 66 CGCCGGCTTCTTAGAGGGACTATCGGCTCAAGCCGATGGAAGTTTGAGGCAATAACAGGT 125 ||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 76040 CGCCGACTTCTTAGAGGGACTATCGGCTCAAGCCGATGGAAGTTTGAGGCAATAACAGGT 75981 Query 126 CTGTGATGCCCTTAGATGTTCTGGGCCGCACGCGCGCTACACTGAC-----------AGA 174 |||||||||||||||||||||||||||||||||||| ||||||||| Sbjct 75980 CTGTGATGCCCTTAGATGTTCTGGGCCGCACGCGCGTTACACTGACGNNNNNNNNNNNNN 75921 Query 175 GCCAACGAGTTCATCACCTTGGCCGGAAGGTCTGGGTAATCTTGTTAAACTCTGTCGTGC 234 || ||||| | | |||||||| |||||| |||||||||||| |||| | ||||||| Sbjct 75920 NNCAGCGAGTACTGC--CTTGGCCGAAAGGTCCGGGTAATCTTGTGAAACCCCGTCGTGC 75863 Query 235 TGGGGATAGAGCATTGCAATTATTGCTCTTCAACGAGGAATGCCTAGTAAGCGCGTGTCA 294 ||||||||||||||||||||||||||||||||||||||||| |||||||||||| |||| Sbjct 75862 TGGGGATAGAGCATTGCAATTATTGCTCTTCAACGAGGAATCCCTAGTAAGCGCAAGTCA 75803 Query 295 TCAGCACGCGTTGATTACGTCCCTGCCCTTTGTA 328 ||||| ||||||||||||||||||||||||||| Sbjct 75802 TCAGCTTGCGTTGATTACGTCCCTGCCCTTTGTA 75769 >seq5557 Length=585122 Score = 233 bits (258), Expect = 4e-59 Identities = 210/263 (80%), Gaps = 2/263 (1%) Strand=Plus/Minus Query 66 CGCCGGCTTCTTAGAGGGACTATCGGCTCAAGCCGATGGAAGTTTGAGGCAATAACAGGT 125 ||| | ||||||||| ||||||||||||||||| || ||||||| ||||||||| |||| Sbjct 383642 CGCTGACTTCTTAGAAGGACTATCGGCTCAAGCTAATAGAAGTTTAAGGCAATAATAGGT 383583 Query 126 CTGTGATGCCCTTAGATGTTCTGGGCCGCACGCGCGCTACACTGACAGAGCCAACGAGTT 185 || | |||||||||||| |||| |||||||||||| |||||| || | || | ||||| Sbjct 383582 CTATAATGCCCTTAGATATTCTAGGCCGCACGCGCATTACACTAACGGGGCTAGCGAGT- 383524 Query 186 CATCACCTTGGCCGGAAGGTCTGGGTAATCTTGTTAAACTCTGTCGTGCTGGGGATAGAG 245 | ||||| |||| |||||| |||||||||| | |||| | || | | |||||||| Sbjct 383523 -ACTACCTTAGCCGAAAGGTCCGGGTAATCTTATAAAACCCCGTTATATTAAGGATAGAG 383465 Query 246 CATTGCAATTATTGCTCTTCAACGAGGAATGCCTAGTAAGCGCGTGTCATCAGCACGCGT 305 |||| ||||||| ||||| |||||||||| |||||||| || || || ||| ||| Sbjct 383464 CATTATAATTATTACTCTTTAACGAGGAATCCCTAGTAAACGTAAGTTATTAGCTTACGT 383405 Query 306 TGATTACGTCCCTGCCCTTTGTA 328 | ||||||||||| |||||| || Sbjct 383404 TAATTACGTCCCTACCCTTTATA 383382 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 946934016768