Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Verticillium_20longisporum_20[genbank_20GCA_5F001268145.1_202015-08-
07] 28,081 sequences; 99,189,222 total letters
Query= AAMG01002186.1
Length=328
Score E
Sequences producing significant alignments: (Bits) Value
seq16224 349 7e-94
seq5557 233 4e-59
>seq16224
Length=81348
Score = 349 bits (386), Expect = 7e-94
Identities = 240/274 (88%), Gaps = 13/274 (5%)
Strand=Plus/Minus
Query 66 CGCCGGCTTCTTAGAGGGACTATCGGCTCAAGCCGATGGAAGTTTGAGGCAATAACAGGT 125
||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 76040 CGCCGACTTCTTAGAGGGACTATCGGCTCAAGCCGATGGAAGTTTGAGGCAATAACAGGT 75981
Query 126 CTGTGATGCCCTTAGATGTTCTGGGCCGCACGCGCGCTACACTGAC-----------AGA 174
|||||||||||||||||||||||||||||||||||| |||||||||
Sbjct 75980 CTGTGATGCCCTTAGATGTTCTGGGCCGCACGCGCGTTACACTGACGNNNNNNNNNNNNN 75921
Query 175 GCCAACGAGTTCATCACCTTGGCCGGAAGGTCTGGGTAATCTTGTTAAACTCTGTCGTGC 234
|| ||||| | | |||||||| |||||| |||||||||||| |||| | |||||||
Sbjct 75920 NNCAGCGAGTACTGC--CTTGGCCGAAAGGTCCGGGTAATCTTGTGAAACCCCGTCGTGC 75863
Query 235 TGGGGATAGAGCATTGCAATTATTGCTCTTCAACGAGGAATGCCTAGTAAGCGCGTGTCA 294
||||||||||||||||||||||||||||||||||||||||| |||||||||||| ||||
Sbjct 75862 TGGGGATAGAGCATTGCAATTATTGCTCTTCAACGAGGAATCCCTAGTAAGCGCAAGTCA 75803
Query 295 TCAGCACGCGTTGATTACGTCCCTGCCCTTTGTA 328
||||| |||||||||||||||||||||||||||
Sbjct 75802 TCAGCTTGCGTTGATTACGTCCCTGCCCTTTGTA 75769
>seq5557
Length=585122
Score = 233 bits (258), Expect = 4e-59
Identities = 210/263 (80%), Gaps = 2/263 (1%)
Strand=Plus/Minus
Query 66 CGCCGGCTTCTTAGAGGGACTATCGGCTCAAGCCGATGGAAGTTTGAGGCAATAACAGGT 125
||| | ||||||||| ||||||||||||||||| || ||||||| ||||||||| ||||
Sbjct 383642 CGCTGACTTCTTAGAAGGACTATCGGCTCAAGCTAATAGAAGTTTAAGGCAATAATAGGT 383583
Query 126 CTGTGATGCCCTTAGATGTTCTGGGCCGCACGCGCGCTACACTGACAGAGCCAACGAGTT 185
|| | |||||||||||| |||| |||||||||||| |||||| || | || | |||||
Sbjct 383582 CTATAATGCCCTTAGATATTCTAGGCCGCACGCGCATTACACTAACGGGGCTAGCGAGT- 383524
Query 186 CATCACCTTGGCCGGAAGGTCTGGGTAATCTTGTTAAACTCTGTCGTGCTGGGGATAGAG 245
| ||||| |||| |||||| |||||||||| | |||| | || | | ||||||||
Sbjct 383523 -ACTACCTTAGCCGAAAGGTCCGGGTAATCTTATAAAACCCCGTTATATTAAGGATAGAG 383465
Query 246 CATTGCAATTATTGCTCTTCAACGAGGAATGCCTAGTAAGCGCGTGTCATCAGCACGCGT 305
|||| ||||||| ||||| |||||||||| |||||||| || || || ||| |||
Sbjct 383464 CATTATAATTATTACTCTTTAACGAGGAATCCCTAGTAAACGTAAGTTATTAGCTTACGT 383405
Query 306 TGATTACGTCCCTGCCCTTTGTA 328
| ||||||||||| |||||| ||
Sbjct 383404 TAATTACGTCCCTACCCTTTATA 383382
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 946934016768
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |