Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Verticillium_20longisporum_20[genbank_20GCA_5F001268145.1_202015-08- 07] 28,081 sequences; 99,189,222 total letters Query= AAMG01002236.1 Length=287 Score E Sequences producing significant alignments: (Bits) Value seq17569 197 2e-48 >seq17569 Length=5207 Score = 197 bits (218), Expect = 2e-48 Identities = 218/280 (78%), Gaps = 8/280 (3%) Strand=Plus/Plus Query 1 GTACGAGAGGAACCGCGGAATTCAGAATAATTGGTTTTTGCGGCTGTCTGACCAGGCAGT 60 |||||||||||||||| | |||||| ||||||||||||||||||||| |||| |||||| Sbjct 4786 GTACGAGAGGAACCGCTCA-TTCAGA-TAATTGGTTTTTGCGGCTGTCCGACCGGGCAGT 4843 Query 61 GCCGCGAAGCTACCATCTGCTGGATTATGGCTGAACGCCTCTAAGTCAGAATCCATGCCA 120 |||||||||||||||||||| |||| |||||||||||||||||||||||||||| ||||| Sbjct 4844 GCCGCGAAGCTACCATCTGCCGGATAATGGCTGAACGCCTCTAAGTCAGAATCCGTGCCA 4903 Query 121 GAACGGGGTGATTCTCTCCTGCACATCGTAGTCGGATACGAATAGG-CTTCGGCCCCGAA 179 ||| | | || | |||| |||| | ||| ||| ||||||||| ||| ||| | Sbjct 4904 GAAAGCGACGACGC-CTCCCGCACGT-ATAGATGGACACGAATAGGCCTTTGGCTTAGCG 4961 Query 180 CCTTAGCAGGCCGGCAACGGGCGTCCCGC-GGAAGCGCGGGGCGCTCAGCTGGCGGATTG 238 |||||||||| ||| | | | | | |||| || | | | | | | ||| |||| Sbjct 4962 TCTTAGCAGGCAAAGAAC-GCCAACGCTCTGGAAACGGGTGTTGGT-ACTTTGCGAATTG 5019 Query 239 CAATTTCACCATGCGCAGGGATAAATCCTTTGCAGACGAC 278 ||||||| || | || ||| ||||| ||||||||||| Sbjct 5020 TAATTTCAGCACGAGCGGGGTCGAATCCCTTGCAGACGAC 5059 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 818977149184