Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Verticillium_20longisporum_20[genbank_20GCA_5F001268145.1_202015-08-
07] 28,081 sequences; 99,189,222 total letters
Query= AAMG01002236.1
Length=287
Score E
Sequences producing significant alignments: (Bits) Value
seq17569 197 2e-48
>seq17569
Length=5207
Score = 197 bits (218), Expect = 2e-48
Identities = 218/280 (78%), Gaps = 8/280 (3%)
Strand=Plus/Plus
Query 1 GTACGAGAGGAACCGCGGAATTCAGAATAATTGGTTTTTGCGGCTGTCTGACCAGGCAGT 60
|||||||||||||||| | |||||| ||||||||||||||||||||| |||| ||||||
Sbjct 4786 GTACGAGAGGAACCGCTCA-TTCAGA-TAATTGGTTTTTGCGGCTGTCCGACCGGGCAGT 4843
Query 61 GCCGCGAAGCTACCATCTGCTGGATTATGGCTGAACGCCTCTAAGTCAGAATCCATGCCA 120
|||||||||||||||||||| |||| |||||||||||||||||||||||||||| |||||
Sbjct 4844 GCCGCGAAGCTACCATCTGCCGGATAATGGCTGAACGCCTCTAAGTCAGAATCCGTGCCA 4903
Query 121 GAACGGGGTGATTCTCTCCTGCACATCGTAGTCGGATACGAATAGG-CTTCGGCCCCGAA 179
||| | | || | |||| |||| | ||| ||| ||||||||| ||| ||| |
Sbjct 4904 GAAAGCGACGACGC-CTCCCGCACGT-ATAGATGGACACGAATAGGCCTTTGGCTTAGCG 4961
Query 180 CCTTAGCAGGCCGGCAACGGGCGTCCCGC-GGAAGCGCGGGGCGCTCAGCTGGCGGATTG 238
|||||||||| ||| | | | | | |||| || | | | | | | ||| ||||
Sbjct 4962 TCTTAGCAGGCAAAGAAC-GCCAACGCTCTGGAAACGGGTGTTGGT-ACTTTGCGAATTG 5019
Query 239 CAATTTCACCATGCGCAGGGATAAATCCTTTGCAGACGAC 278
||||||| || | || ||| ||||| |||||||||||
Sbjct 5020 TAATTTCAGCACGAGCGGGGTCGAATCCCTTGCAGACGAC 5059
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 818977149184
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |