Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Verticillium_20longisporum_20[genbank_20GCA_5F001268145.1_202015-08-
07] 28,081 sequences; 99,189,222 total letters
Query= AAMG01002244.1
Length=504
Score E
Sequences producing significant alignments: (Bits) Value
seq16224 489 5e-136
seq5557 244 3e-62
>seq16224
Length=81348
Score = 489 bits (542), Expect = 5e-136
Identities = 430/527 (82%), Gaps = 33/527 (6%)
Strand=Plus/Plus
Query 1 GTACTCATTCCAATTACAAGACCCAAAAGAGCCCTGTATCAGTATTTATTGTCACTACCT 60
|||||||||||||||||| ||||||||||||||||||||| |||||||| ||||||||||
Sbjct 66245 GTACTCATTCCAATTACAGGACCCAAAAGAGCCCTGTATCGGTATTTATCGTCACTACCT 66304
Query 61 CCCCGTGTCGGGATTGGGT-------------AATTTGCGCGCCTGCTGCCTTCCTTGGA 107
||||| |||||||||||| ||||||||||||||||||||||||||||
Sbjct 66305 CCCCGAGTCGGGATTGGGNNNNNNNNNNNNNNAATTTGCGCGCCTGCTGCCTTCCTTGGA 66364
Query 108 TGTGGTAGCCGTTTCTCAGGCTCCCTCTCCGGAATCGAACCCTAATTCCCCGTTACCCGT 167
||| |||||||||||||||||||| ||||||| |||| |||||| | |||| ||||||
Sbjct 66365 TGTAGTAGCCGTTTCTCAGGCTCCTTCTCCGGGGTCGAGCCCTAACCCTCCGTCACCCGT 66424
Query 168 TGATACCATGGTAGGCCACTATCCTACCATCGAAAGTTGATAGGG-CAGAAATTTGAA-T 225
|| |||||| |||| ||| ||||| | || | | ||| || |
Sbjct 66425 TGCAACCATGCTAGGAGT-TATGG---CATCGTAGCTTTCAACTATCCCTTCTTTAAACT 66480
Query 226 GA--ACCAT-CGCCGGCTCAAGGCCATGCGAT--TCGTTAA--GTTATTA-TGAATCACC 277
| ||||| || | || | | || || | || | || || ||| || |||
Sbjct 66481 TACTACCATGCGGCCGCGCCCCGGCACGCTAAGCTCTTCAATAGTACTTAGTGGTTCA-- 66538
Query 278 AAGGAGCCCCGAAGGGCGTTGGTTTTTTATCTAATAAATACACCCCTTCCGAAGTCGGGG 337
|||||||||||||| |||||||| ||||||||||||||| ||||||||||||||||
Sbjct 66539 ---GAGCCCCGAAGGGCATTGGTTTTGTATCTAATAAATACATCCCTTCCGAAGTCGGGA 66595
Query 338 TTTTTAGCATGTATTAGCTCTAGAATTACCACGGTTATCCATGTAGTAAGGTACTATCAA 397
|||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 66596 TTTTCAGCATGTATTAGCTCTAGAATTACCACGGTTATCCATGTAGTAAGGTACTATCAA 66655
Query 398 ATAAACGATAACTGATTTAATGAGCCATTCGCAGTTTCACTGTATAGATTGCTTATACTT 457
||||||||||||| || ||||||||||||||||||||| || | || |||||||||||||
Sbjct 66656 ATAAACGATAACTTATATAATGAGCCATTCGCAGTTTCGCTTTGTA-ATTGCTTATACTT 66714
Query 458 AGACATGCATGGCTTAATCTTTGAGACAAGCATATGACTACTGGCAG 504
|||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 66715 AGACATGCATGGCTTAATCTTTGAGACAAGCATATGACTACTGGCAG 66761
>seq5557
Length=585122
Score = 244 bits (270), Expect = 3e-62
Identities = 236/302 (78%), Gaps = 1/302 (0%)
Strand=Plus/Plus
Query 7 ATTCCAATTACAAGACCCAAAAGAGCCCTGTATCAGTATTTATTGTCACTACCTCCCCGT 66
|||| ||||| | |||| ||||||||||| |||| |||||||| || ||||||||||||
Sbjct 384444 ATTCTAATTATAGGACCTAAAAGAGCCCTATATCGGTATTTATCGTTACTACCTCCCCGA 384503
Query 67 GTCGGGATTGGGTAATTTGCGCGCCTGCTGCCTTCCTTGGATGTGGTAGCCGTTTCTCAG 126
||||||||| |||||||||||||||| | |||||||| ||| | |||||||||||| ||
Sbjct 384504 GTCGGGATTAGGTAATTTGCGCGCCTATTACCTTCCTTAGATATAGTAGCCGTTTCTTAG 384563
Query 127 GCTCCCTCTCCGGAATCGAACCCTAATTCCCCGTTACCCGTTGATACCATGGTAGGCCAC 186
||||| ||||| |||| |||||| | |||||||||||| || || |||| |
Sbjct 384564 GCTCCTTCTCCAAGGTCGAGCCCTAACCCTCCGTTACCCGTTATAACTATACTAGGATAA 384623
Query 187 TATCCTACCATCGAAAGTTGATAGGGCAGAAATTTGAATGAACCATCGCCGGCTCAAGGC 246
|| | || |||||||||| |||||| |||||||| ||| ||| || || | |||
Sbjct 384624 TACCGTAATATCGAAAGTTAATAGGGAAGAAATTTAAATAAACTATTATTAGCGCGGGGC 384683
Query 247 CATGCGATTCGTTAAGTTATTATGAATCACCAAG-GAGCCCCGAAGGGCGTTGGTTTTTT 305
|| ||||| |||||||||| ||| || ||| ||||||||||||| || ||||| |
Sbjct 384684 TATACGATTTAAGAAGTTATTATAAATTACTAAGAGAGCCCCGAAGGGTATTAGTTTTAT 384743
Query 306 AT 307
||
Sbjct 384744 AT 384745
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 1509975864576
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |