Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Verticillium_20longisporum_20[genbank_20GCA_5F001268145.1_202015-08- 07] 28,081 sequences; 99,189,222 total letters Query= AAMG01002244.1 Length=504 Score E Sequences producing significant alignments: (Bits) Value seq16224 489 5e-136 seq5557 244 3e-62 >seq16224 Length=81348 Score = 489 bits (542), Expect = 5e-136 Identities = 430/527 (82%), Gaps = 33/527 (6%) Strand=Plus/Plus Query 1 GTACTCATTCCAATTACAAGACCCAAAAGAGCCCTGTATCAGTATTTATTGTCACTACCT 60 |||||||||||||||||| ||||||||||||||||||||| |||||||| |||||||||| Sbjct 66245 GTACTCATTCCAATTACAGGACCCAAAAGAGCCCTGTATCGGTATTTATCGTCACTACCT 66304 Query 61 CCCCGTGTCGGGATTGGGT-------------AATTTGCGCGCCTGCTGCCTTCCTTGGA 107 ||||| |||||||||||| |||||||||||||||||||||||||||| Sbjct 66305 CCCCGAGTCGGGATTGGGNNNNNNNNNNNNNNAATTTGCGCGCCTGCTGCCTTCCTTGGA 66364 Query 108 TGTGGTAGCCGTTTCTCAGGCTCCCTCTCCGGAATCGAACCCTAATTCCCCGTTACCCGT 167 ||| |||||||||||||||||||| ||||||| |||| |||||| | |||| |||||| Sbjct 66365 TGTAGTAGCCGTTTCTCAGGCTCCTTCTCCGGGGTCGAGCCCTAACCCTCCGTCACCCGT 66424 Query 168 TGATACCATGGTAGGCCACTATCCTACCATCGAAAGTTGATAGGG-CAGAAATTTGAA-T 225 || |||||| |||| ||| ||||| | || | | ||| || | Sbjct 66425 TGCAACCATGCTAGGAGT-TATGG---CATCGTAGCTTTCAACTATCCCTTCTTTAAACT 66480 Query 226 GA--ACCAT-CGCCGGCTCAAGGCCATGCGAT--TCGTTAA--GTTATTA-TGAATCACC 277 | ||||| || | || | | || || | || | || || ||| || ||| Sbjct 66481 TACTACCATGCGGCCGCGCCCCGGCACGCTAAGCTCTTCAATAGTACTTAGTGGTTCA-- 66538 Query 278 AAGGAGCCCCGAAGGGCGTTGGTTTTTTATCTAATAAATACACCCCTTCCGAAGTCGGGG 337 |||||||||||||| |||||||| ||||||||||||||| |||||||||||||||| Sbjct 66539 ---GAGCCCCGAAGGGCATTGGTTTTGTATCTAATAAATACATCCCTTCCGAAGTCGGGA 66595 Query 338 TTTTTAGCATGTATTAGCTCTAGAATTACCACGGTTATCCATGTAGTAAGGTACTATCAA 397 |||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 66596 TTTTCAGCATGTATTAGCTCTAGAATTACCACGGTTATCCATGTAGTAAGGTACTATCAA 66655 Query 398 ATAAACGATAACTGATTTAATGAGCCATTCGCAGTTTCACTGTATAGATTGCTTATACTT 457 ||||||||||||| || ||||||||||||||||||||| || | || ||||||||||||| Sbjct 66656 ATAAACGATAACTTATATAATGAGCCATTCGCAGTTTCGCTTTGTA-ATTGCTTATACTT 66714 Query 458 AGACATGCATGGCTTAATCTTTGAGACAAGCATATGACTACTGGCAG 504 ||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 66715 AGACATGCATGGCTTAATCTTTGAGACAAGCATATGACTACTGGCAG 66761 >seq5557 Length=585122 Score = 244 bits (270), Expect = 3e-62 Identities = 236/302 (78%), Gaps = 1/302 (0%) Strand=Plus/Plus Query 7 ATTCCAATTACAAGACCCAAAAGAGCCCTGTATCAGTATTTATTGTCACTACCTCCCCGT 66 |||| ||||| | |||| ||||||||||| |||| |||||||| || |||||||||||| Sbjct 384444 ATTCTAATTATAGGACCTAAAAGAGCCCTATATCGGTATTTATCGTTACTACCTCCCCGA 384503 Query 67 GTCGGGATTGGGTAATTTGCGCGCCTGCTGCCTTCCTTGGATGTGGTAGCCGTTTCTCAG 126 ||||||||| |||||||||||||||| | |||||||| ||| | |||||||||||| || Sbjct 384504 GTCGGGATTAGGTAATTTGCGCGCCTATTACCTTCCTTAGATATAGTAGCCGTTTCTTAG 384563 Query 127 GCTCCCTCTCCGGAATCGAACCCTAATTCCCCGTTACCCGTTGATACCATGGTAGGCCAC 186 ||||| ||||| |||| |||||| | |||||||||||| || || |||| | Sbjct 384564 GCTCCTTCTCCAAGGTCGAGCCCTAACCCTCCGTTACCCGTTATAACTATACTAGGATAA 384623 Query 187 TATCCTACCATCGAAAGTTGATAGGGCAGAAATTTGAATGAACCATCGCCGGCTCAAGGC 246 || | || |||||||||| |||||| |||||||| ||| ||| || || | ||| Sbjct 384624 TACCGTAATATCGAAAGTTAATAGGGAAGAAATTTAAATAAACTATTATTAGCGCGGGGC 384683 Query 247 CATGCGATTCGTTAAGTTATTATGAATCACCAAG-GAGCCCCGAAGGGCGTTGGTTTTTT 305 || ||||| |||||||||| ||| || ||| ||||||||||||| || ||||| | Sbjct 384684 TATACGATTTAAGAAGTTATTATAAATTACTAAGAGAGCCCCGAAGGGTATTAGTTTTAT 384743 Query 306 AT 307 || Sbjct 384744 AT 384745 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1509975864576