Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Verticillium_20longisporum_20[genbank_20GCA_5F001268145.1_202015-08- 07] 28,081 sequences; 99,189,222 total letters Query= NC_010671.1 Length=124279 Score E Sequences producing significant alignments: (Bits) Value seq24749 302 4e-77 seq27938 271 6e-68 seq18890 149 5e-31 >seq24749 Length=740841 Score = 302 bits (334), Expect = 4e-77 Identities = 636/942 (68%), Gaps = 6/942 (1%) Strand=Plus/Minus Query 66001 GGGAAGGGCAAGAGATGCGAGGTTGCAGACAGCTATCTCGTCAGGAGCGGTATACTCGAC 66060 ||| ||||| ||||| || ||||||||||| || | ||| || || || | |||||||| Sbjct 416536 GGGCAGGGCCAGAGAGGCCAGGTTGCAGACGGCAACCTCATCGGGTGCCGAGTACTCGAC 416477 Query 66061 AATTTCGGTGCACAGATTACTGCAGCGTATGGTGCCCAAATTCTGTTGATTACTCTTGCG 66120 ||| || |||||||| || || ||| ||||| || | |||| || || |||||||| Sbjct 416476 AATCTCTGTGCACAGGTTGGAGCTGCGAATGGTACCAAGGTTCTTCTGGTTGCTCTTGCG 416417 Query 66121 ATTGCATGCATCCTTGTACATCATGTACGGAGTGCCGGTCTCAACTTGGGACTCAATGAT 66180 ||||| ||||||||| | |||| | || |||||||||| || | ||| | || Sbjct 416416 GTTGCAGTGATCCTTGTAGAGCATGAAGGGGTTGCCGGTCTCGGTCTGAGCCTCGAGGAC 416357 Query 66181 GGCGTGCCAAAGAGCGCGTGCCTTCACCGTACGTACCGCCCTACCTTTGCGT-TCGTAAT 66239 ||||| |||||| | ||||| | || | | | ||||| | | | ||||| | Sbjct 416356 GGCGTACCAAAGCTTCTGCGCCTTGATGGT-CTTGCGGCCCTTGCCAGCCTTCTCGTACT 416298 Query 66240 GTTCGTAGAGGTGTTCGAAGGATTCACCCCATACTTCGGACAGACATGGACACTTGTGTG 66299 ||||| | | || || ||||| | || | || | || |||| || | Sbjct 416297 TCTCGTACAAGGCCTCAAACTCGTCACCGTAGCAGTCAGCAAGGCCAGGGCACTCGTTGG 416238 Query 66300 GACACATCAGCGACCAATCACCATCCTGTTCTACACGACGCATAAATAGATCAGGTATCC 66359 | ||||| || | ||| || || | || || ||||| ||| || ||||| || |||| Sbjct 416237 GGCACATGAGAGTCCAGTCGCCGTTCTTCTCGACACGCTTCATGAAGAGATCGGGGATCC 416178 Query 66360 AGAGGGCGTAGAAGAGATCGCGTGCTCGTTGCTCCTCAATGCCGTGATTTTTGCGCAAGT 66419 | ||||| ||| |||||||| || || ||||| ||||||| || ||||| | || Sbjct 416177 ACAGGGCCAGGAAAAGATCGCGAGCGCGAACTTCCTCCTTGCCGTGGTTCTTGCGGAGGT 416118 Query 66420 CGAGGAACTCAAAGATGTCGGCATGCCATGGTTCCAGGTAGATGGCGAACGAGCCCATAC 66479 | |||||||| |||| || || |||||||| || ||||||||||| || | ||| || Sbjct 416117 CAAGGAACTCGAAGACATCAGCGTGCCATGGCTCAAGGTAGATGGCAAAAGCGCCGGGAC 416058 Query 66480 GTTTGCCGCCACCTTGGTCGACGTAGCGAGCGACATTGTTGAAGACACGCAACATCGGTA 66539 | ||| ||| || ||||| |||||||| || ||||||||||| || | ||| || Sbjct 416057 GCTTGTTGCCGCCCTGGTCAACGTAGCGCGCCGTGTTGTTGAAGACGCGAAGCATGGGCG 415998 Query 66540 CGAGCCCGTTAGATTTGCCATTGGTGCCGTCGATGGGGGATCCTCGTGCCCGTATATCGT 66599 || ||||| || |||| ||||||||| | ||| || || || || || | Sbjct 415997 TGATGCCGTTTGAAGTGCCGTTGGTGCCGGCAATGTAAGAGCCAGTGGCACGGATGCGAT 415938 Query 66600 GAACATTCAGACCAATACCACCGGCCGTCTTCGAGATGGCAGCACA-ATC-GGCCACTGT 66657 | || ||||||||||||||||| ||| |||| ||||| ||||| || | ||| Sbjct 415937 GGACGTTCAGACCAATACCACCAGCCATCTTGGAGATCATGGCACAGGTCTTGAGGGTGT 415878 Query 66658 CCGGAATATGCCGTCAATGGAGTCACCCTTGATGGTCAGGAGGTAGCATGAACTAAGTTG 66717 | | | || || |||||| |||| |||| ||| | ||| |||| || || || Sbjct 415877 C--GTAGATACCTTCAATGCTGTCATCCTTCATGTCAACCAGGAAGCAGGACGACAGCTG 415820 Query 66718 GGGTTTGGGTGTGGCGGCCGAGAAGAGGGTGGGTGTAGCGTGCGTAAAGTAATGGCGAGA 66777 | | || ||| | || ||||||||| || | ||||| || ||| | | || || Sbjct 415819 AGCCTGAGGCGTGCCAGCGTTGAAGAGGGTAGGAGATGCGTGTGTGAAGAATTTGCTGGA 415760 Query 66778 CATGTAATTGTACGTCTCGATGACAGCATCAATGTTTTCGCCATGAATCCCGAGTGCACA 66837 |||| ||||||||||| |||||| |||| ||| || || || |||| | | Sbjct 415759 CATGAGGTTGTACGTCTCAATGACACGCTCAACGTTGTCTCCCCAGATACCGACGGAAAC 415700 Query 66838 TCGCATCAGGAGGTATTGAGGCCGTTCGACCAGCCGATCCTTGATATGCATTAAGTAGGA 66897 ||||| | | || || || || ||| | | | | | | | | | ||||| Sbjct 415699 ACGCATAATCATGTGCTGCGGGCGCTCGGCAATCTTGCCGTCAAGCTTGAGGAGATAGGA 415640 Query 66898 GCGTTCCAGGGTCTTGATACCAAAGTACGAGTAATTGAAATC 66939 || ||||||||||||| |||||||| ||| ||||| || Sbjct 415639 ACGCTCCAGGGTCTTGAAGCCAAAGTATTGGTAGTTGAAGTC 415598 Score = 150 bits (166), Expect = 1e-31 Identities = 320/469 (68%), Gaps = 8/469 (2%) Strand=Plus/Plus Query 65077 ATCGACCGTGAACTGGATCGCATTAGCAGCCGCCTTGGTCCTAAGATAGTACATGCCGGT 65136 ||| || ||||| ||||| | ||||| |||| ||| | || |||||||||||||| Sbjct 446562 ATCAACGGTGAATTGGATAGGGGCCGCAGCAGCCTGGGTGCGCAGGTAGTACATGCCGGT 446621 Query 65137 CTTGAGGCCAGCACGCCAAGCATAGAAATGCATCGATGATAATTTTGCATAAT-TCGGCT 65195 |||||||||| ||| | ||| ||||| | | | || |||| | | || | Sbjct 446622 CTTGAGGCCAAGCTTCCAGCCGGCGAAGTGCAT-GCTCGTGATCTTGCCCATGGTAGGGT 446680 Query 65196 CGGCCACATGCATATTCAACGACTGACTCTGATCGATGTAACGACCACGATCTGCAGCCA 65255 | || || || ||||| |||||| ||| |||||| | ||||||||| ||||||| Sbjct 446681 CCTTCATGTGAATGTTCAAGGACTGAGACTGGTCGATGAAGGCACCACGATCGGCAGCCA 446740 Query 65256 TGTCAATGATACGACGTCCCGATATCTCCCAGACGGTCTTGTACAGGCGACGT-ACCTCA 65314 | | || || || || ||||||||||| |||||||||||| ||| | | || Sbjct 446741 TCTGAACGACGGTGCGCTGAGAAATCTCCCAGACAGTCTTGTACAGG-GACTTGATGTCG 446799 Query 65315 ATTGGAATCTCCTCAATGTCCTGGACTGAACCACGACGTGCAATAATGCGATTACGCATC 65374 ||||| | ||||| ||||| |||||| |||||| ||||| || ||| Sbjct 446800 GCGGGAATGTTGGGAATGTTCTGGATGGAACCATTTTCTGCAATGATGCGGTTCTTCATG 446859 Query 65375 GACTCTGACCACAAACCCAAATCGATAAGATG-TTGAACCAAGTGACGA-TTGATGACTT 65432 || ||||| | ||||| |||| ||| | |||| | || | | |||| ||| | Sbjct 446860 CTATCAGACCAAAGACCCATGTCGACAAGGTCCTTGAGC--AGCCAGGGGTTGACGACCT 446917 Query 65433 GGAACTCGCCGGACAGTACACGACGGACATAGATGTTGGACGTGATGGGTTCAAAGGATT 65492 |||||||||||| || ||||| || ||||||||||||||| || || ||| | | Sbjct 446918 GGAACTCGCCGGCGAGCACACGGCGCTGGTAGATGTTGGACGTGTAAGGCTCGAAGCACT 446977 Query 65493 CAGTGTTGCCTAGAATTTGGGCAGTAGATGCAGTTGGCATGGGAGCGAC 65541 | ||||||| || || || | ||| || || |||||||| || || Sbjct 446978 CGTTGTTGCCAAGGATCTGCGAGGTACTGGCCGTGGGCATGGGCGCCAC 447026 Score = 143 bits (158), Expect = 2e-29 Identities = 321/472 (68%), Gaps = 14/472 (3%) Strand=Plus/Minus Query 65077 ATCGACCGTGAACTGGATCGCATTAGCAGCCGCCTTGGTCCTAAGATAGTACATGCCGGT 65136 ||| || ||||| || || | |||||| |||| ||| | || |||||||||||||| Sbjct 417442 ATCAACAGTGAATTGAATAGGGGCAGCAGCAGCCTGGGTGCGCAGGTAGTACATGCCGGT 417383 Query 65137 CTTGAGGCCAGCACGCCAAGCATAGAAATGCATCGATGATAATTTTGCATAAT-TCGGCT 65195 |||||||||| ||| | ||| ||||| | | | || |||| | | || | Sbjct 417382 CTTGAGGCCAAGCTTCCAGCCGGCGAAGTGCAT-GCTCGTGATCTTGCCCATGGTAGGGT 417324 Query 65196 CGGCCACATGCATATTCAACGACTGACTCTGATCGATGTAACGACCACGATCTGCAGCCA 65255 | || || || ||||| ||||| ||| |||||| | ||||||||| ||||||| Sbjct 417323 CCTTCATGTGAATGTTCAAGGACTGGGACTGGTCGATGAAGGCACCACGATCGGCAGCCA 417264 Query 65256 TGT---CAATGATACGACGTCCCGATATCTCCCAGACGGTCTTGTACAGGCGACGT-ACC 65311 | | ||| | | || | || ||||||||||| |||||||||||| ||| | || Sbjct 417263 TCTGCACAACGGTGCGCTGA---GAAATCTCCCAGACAGTCTTGTACAGG-GACTTGACG 417208 Query 65312 TCAATTGGAATCTCCTCAATGTCCTGGACTGAACCACGACGTGCAATAATGCGATTACGC 65371 || ||||| | |||| ||||| |||||| ||||| |||||||| | Sbjct 417207 TCGGCGGGAATGTTGGGGATGTTCTGGATGGAACCATTCTCGGCAATGATGCGATTCTTC 417148 Query 65372 ATCGACTCTGACCACAAACCCAAATCGATAAGATG-TTGAACCAAGTGACGA-TTGATGA 65429 || || ||||| | ||||| || | ||||| |||| | || | | |||| || Sbjct 417147 ATGCTATCAGACCAAAGACCCATGTCAACAAGATCCTTGAGC--AGCCAGGGGTTGACGA 417090 Query 65430 CTTGGAACTCGCCGGACAGTACACGACGGACATAGATGTTGGACGTGATGGGTTCAAAGG 65489 | ||||||||||||| || ||||| || ||||||||||||||| || || ||| Sbjct 417089 CCTGGAACTCGCCGGCGAGCACACGGCGCTGGTAGATGTTGGACGTGTAAGGCTCGAAGC 417030 Query 65490 ATTCAGTGTTGCCTAGAATTTGGGCAGTAGATGCAGTTGGCATGGGAGCGAC 65541 | || ||||||| || || || | ||| || || |||||||| || || Sbjct 417029 ACTCGTTGTTGCCAAGGATCTGCGAGGTACTGGCCGTGGGCATGGGCGCCAC 416978 >seq27938 Length=10276 Score = 271 bits (300), Expect = 6e-68 Identities = 444/637 (70%), Gaps = 2/637 (0%) Strand=Plus/Plus Query 66001 GGGAAGGGCAAGAGATGCGAGGTTGCAGACAGCTATCTCGTCAGGAGCGGTATACTCGAC 66060 ||| ||||| ||||| || ||||||||||| || | ||| || || || | |||||||| Sbjct 9599 GGGCAGGGCCAGAGAGGCCAGGTTGCAGACGGCAACCTCATCGGGTGCCGAGTACTCGAC 9658 Query 66061 AATTTCGGTGCACAGATTACTGCAGCGTATGGTGCCCAAATTCTGTTGATTACTCTTGCG 66120 ||| || |||||||| || || ||| ||||| || | |||| || || |||||||| Sbjct 9659 AATCTCTGTGCACAGGTTGGAGCTGCGAATGGTACCAAGGTTCTTCTGGTTGCTCTTGCG 9718 Query 66121 ATTGCATGCATCCTTGTACATCATGTACGGAGTGCCGGTCTCAACTTGGGACTCAATGAT 66180 ||||| ||||||||| | |||| | || |||||||||| || | ||| | || Sbjct 9719 GTTGCAGTGATCCTTGTAGAGCATGAAGGGGTTGCCGGTCTCGGTCTGAGCCTCGAGGAC 9778 Query 66181 GGCGTGCCAAAGAGCGCGTGCCTTCACCGTACGTACCGCCCTACCTTTGCGT-TCGTAAT 66239 ||||| |||||| | ||||| | || | | | ||||| | | | ||||| | Sbjct 9779 GGCGTACCAAAGCTTCTGCGCCTTGATGGT-CTTGCGGCCCTTGCCAGCCTTCTCGTACT 9837 Query 66240 GTTCGTAGAGGTGTTCGAAGGATTCACCCCATACTTCGGACAGACATGGACACTTGTGTG 66299 ||||| | | || || ||||| | || | || | || |||| || | Sbjct 9838 TCTCGTACAAGGCCTCAAACTCGTCACCGTAGCAGTCAGCAAGGCCAGGGCACTCGTTGG 9897 Query 66300 GACACATCAGCGACCAATCACCATCCTGTTCTACACGACGCATAAATAGATCAGGTATCC 66359 | ||||| || | ||| || || | || || ||||| ||| || ||||| || |||| Sbjct 9898 GGCACATGAGAGTCCAGTCGCCGTTCTTCTCGACACGCTTCATGAAGAGATCGGGGATCC 9957 Query 66360 AGAGGGCGTAGAAGAGATCGCGTGCTCGTTGCTCCTCAATGCCGTGATTTTTGCGCAAGT 66419 | ||||| ||| |||||||| || || ||||| ||||||| || ||||| | || Sbjct 9958 ACAGGGCCAGGAAAAGATCGCGAGCGCGAACTTCCTCCTTGCCGTGGTTCTTGCGGAGGT 10017 Query 66420 CGAGGAACTCAAAGATGTCGGCATGCCATGGTTCCAGGTAGATGGCGAACGAGCCCATAC 66479 | |||||||| |||| || || |||||||| || ||||||||||| || | ||| || Sbjct 10018 CAAGGAACTCGAAGACATCAGCGTGCCATGGCTCAAGGTAGATGGCAAAAGCGCCGGGAC 10077 Query 66480 GTTTGCCGCCACCTTGGTCGACGTAGCGAGCGACATTGTTGAAGACACGCAACATCGGTA 66539 | ||| ||| || ||||| |||||||| || ||||||||||| || | ||| || Sbjct 10078 GCTTGTTGCCGCCCTGGTCAACGTAGCGCGCCGTGTTGTTGAAGACGCGAAGCATGGGCG 10137 Query 66540 CGAGCCCGTTAGATTTGCCATTGGTGCCGTCGATGGGGGATCCTCGTGCCCGTATATCGT 66599 || ||||| || |||| ||||||||| | ||| || || || || || | Sbjct 10138 TGATGCCGTTTGAAGTGCCGTTGGTGCCGGCAATGTAAGAGCCAGTGGCACGGATGCGAT 10197 Query 66600 GAACATTCAGACCAATACCACCGGCCGTCTTCGAGAT 66636 | || ||||||||||||||||| ||| |||| ||||| Sbjct 10198 GGACGTTCAGACCAATACCACCAGCCATCTTGGAGAT 10234 >seq18890 Length=446397 Score = 149 bits (164), Expect = 5e-31 Identities = 238/335 (71%), Gaps = 9/335 (3%) Strand=Plus/Minus Query 61087 ATTTGGCGCATGTACAAAAAGGCGGAAGCTTCCTTCTGGACGGTGGAGGAGGTCGATTTG 61146 ||||||| |||||||| ||||| |||||||| |||||||| | || ||| | ||| || Sbjct 160955 ATTTGGCAAATGTACAAGAAGGCAGAAGCTTCTTTCTGGACCGCCGAAGAGATTGATCTG 160896 Query 61147 TCCAAAGACATGAATGACTGGGAGC----GTTTATCGAGCGGTGAACAACATTTCATTAA 61202 ||||| || | | |||||| | | | | || || |||| | | ||||| Sbjct 160895 TCCAAGGATCTCCACGACTGGAACAACAAGATCAATGA-CGATGAAAAGTACTTCATCTC 160837 Query 61203 ACATGTGTTGGCGTTCTTTGCCGCTTCGGACGGTATCGTCAATGAGAATTTATTGGAACG 61262 ||| | | || |||||||||||||| || || |||||||| ||||| | | || || Sbjct 160836 ACACATCCTTGCCTTCTTTGCCGCTTCAGATGGCATCGTCAACGAGAACCTCGTTGAGCG 160777 Query 61263 TTTC-GCGCAGGAGGTGCAAGTGTCGGAGGCGCGTTGTTTCTACGGCTTCCAGATTGCCA 61321 ||| | || | |||| || || | ||||| || || ||||||||||||||||| | Sbjct 160776 CTTCAGTGCCG-AGGTCCAGGTTCCCGAGGCTCGATGCTTCTACGGCTTCCAGATCATGA 160718 Query 61322 TGGAGAATGTCCACTCGGAGATGTACAGTGTTCTCATCGATACGTACATCAGGGAGCGGG 61381 ||||||| ||||||| |||| ||| | ||||| || || ||||||| ||||| | Sbjct 160717 TGGAGAACATCCACTCTGAGACTTACTCGCTGCTCATTGACACCTACATCAAGGAGCCTG 160658 Query 61382 CGGAACGTGAACGAT-TGTTCAATGCCATCGAGAC 61415 | | | || | || | |||||||||||||| || Sbjct 160657 CCCAGAG-GACCTATCTCTTCAATGCCATCGATAC 160624 Score = 134 bits (148), Expect = 1e-26 Identities = 235/335 (70%), Gaps = 9/335 (3%) Strand=Plus/Plus Query 61087 ATTTGGCGCATGTACAAAAAGGCGGAAGCTTCCTTCTGGACGGTGGAGGAGGTCGATTTG 61146 ||||||| |||||||| ||||| || |||||||||||||| | || ||| | ||| | Sbjct 408676 ATTTGGCAAATGTACAAGAAGGCAGAGGCTTCCTTCTGGACCGCCGAAGAGATTGATCTA 408735 Query 61147 TCCAAAGACATGAATGACTGGGAGC----GTTTATCGAGCGGTGAACAACATTTCATTAA 61202 || || || | | |||||| | | | | || | |||| | | ||||| Sbjct 408736 TCTAAGGATCTCCACGACTGGAACAACAAGATCAATGAT-GATGAAAAGTACTTCATCTC 408794 Query 61203 ACATGTGTTGGCGTTCTTTGCCGCTTCGGACGGTATCGTCAATGAGAATTTATTGGAACG 61262 ||| | | || |||||||||||||| || || |||||||| ||||| | | || || Sbjct 408795 ACACATCCTTGCCTTCTTTGCCGCTTCAGATGGCATCGTCAACGAGAACCTCGTTGAGCG 408854 Query 61263 TTTC-GCGCAGGAGGTGCAAGTGTCGGAGGCGCGTTGTTTCTACGGCTTCCAGATTGCCA 61321 ||| | || ||||| || || | ||||| || || |||||||||||||||||| | Sbjct 408855 CTTCAGTGC-CGAGGTCCAGGTTCCTGAGGCTCGATGCTTCTACGGCTTCCAGATTATGA 408913 Query 61322 TGGAGAATGTCCACTCGGAGATGTACAGTGTTCTCATCGATACGTACATCAGGGAGCGGG 61381 ||||||| ||||||| |||| ||| | ||||| || || ||||||| |||| | Sbjct 408914 TGGAGAACATCCACTCCGAGACTTACTCGCTGCTCATTGACACCTACATCAAAGAGCCTG 408973 Query 61382 CGGAACGTGAACGAT-TGTTCAATGCCATCGAGAC 61415 | | | || | || | |||||||||||||| || Sbjct 408974 CCCAGAG-GACCTATCTCTTCAATGCCATCGATAC 409007 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 397431937445840