Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Verticillium_20longisporum_20[genbank_20GCA_5F001268145.1_202015-08- 07] 28,081 sequences; 99,189,222 total letters Query= NC_032108.1 Length=589068 Score E Sequences producing significant alignments: (Bits) Value seq26972 104 9e-17 seq20929 104 9e-17 seq8669 104 9e-17 >seq26972 Length=214529 Score = 104 bits (114), Expect = 9e-17 Identities = 112/146 (77%), Gaps = 2/146 (1%) Strand=Plus/Minus Query 364425 CAATAGTCATACGAGAGGGAATGGAGAGAGGGTTGATGATGATGTCAGGCACCATGCCGT 364484 |||| ||||| || || || |||| ||||||||||||||||||| || || || | Sbjct 156063 CAATGGTCATTCGTGAAGGGATGGCATGAGGGTTGATGATGATGTCCGGAGTGATACCCT 156004 Query 364485 CAGCGGTAAAGGGCATATCTT-CGGGAGGAACGATGAGACCAATGGTTCCCTTTTGCGCA 364543 | | ||| |||||||| |||| | || || ||| ||| |||||| ||||| || || | Sbjct 156003 CCGAGGTGAAGGGCATGTCTTCCTGGCGGTACG-TGACACCAATCGTTCCTTTCTGACCG 155945 Query 364544 TAGCGAGAAGCAAACTTGTCGCCAAT 364569 | |||||||||||||||||||| || Sbjct 155944 TGACGAGAAGCAAACTTGTCGCCGAT 155919 >seq20929 Length=43971 Score = 104 bits (114), Expect = 9e-17 Identities = 112/146 (77%), Gaps = 2/146 (1%) Strand=Plus/Minus Query 364425 CAATAGTCATACGAGAGGGAATGGAGAGAGGGTTGATGATGATGTCAGGCACCATGCCGT 364484 |||| ||||| || || || |||| ||||||||||||||||||| || || || | Sbjct 29003 CAATGGTCATTCGTGAAGGGATGGCATGAGGGTTGATGATGATGTCCGGAGTGATACCCT 28944 Query 364485 CAGCGGTAAAGGGCATATCTT-CGGGAGGAACGATGAGACCAATGGTTCCCTTTTGCGCA 364543 | | ||| |||||||| |||| | || || ||| ||| |||||| ||||| || || | Sbjct 28943 CCGAGGTGAAGGGCATGTCTTCCTGGCGGTACG-TGACACCAATCGTTCCTTTCTGACCG 28885 Query 364544 TAGCGAGAAGCAAACTTGTCGCCAAT 364569 | |||||||||||||||||||| || Sbjct 28884 TGACGAGAAGCAAACTTGTCGCCGAT 28859 >seq8669 Length=5455 Score = 104 bits (114), Expect = 9e-17 Identities = 112/146 (77%), Gaps = 2/146 (1%) Strand=Plus/Plus Query 364425 CAATAGTCATACGAGAGGGAATGGAGAGAGGGTTGATGATGATGTCAGGCACCATGCCGT 364484 |||| ||||| || || || |||| ||||||||||||||||||| || || || | Sbjct 86 CAATGGTCATTCGTGAAGGGATGGCATGAGGGTTGATGATGATGTCCGGAGTGATACCCT 145 Query 364485 CAGCGGTAAAGGGCATATCTT-CGGGAGGAACGATGAGACCAATGGTTCCCTTTTGCGCA 364543 | | ||| |||||||| |||| | || || ||| ||| |||||| ||||| || || | Sbjct 146 CCGAGGTGAAGGGCATGTCTTCCTGGCGGTACG-TGACACCAATCGTTCCTTTCTGACCG 204 Query 364544 TAGCGAGAAGCAAACTTGTCGCCAAT 364569 | |||||||||||||||||||| || Sbjct 205 TGACGAGAAGCAAACTTGTCGCCGAT 230 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1884208240845333