Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Verticillium_20longisporum_20[genbank_20GCA_5F001268145.1_202015-08-
07] 28,081 sequences; 99,189,222 total letters
Query= NC_032108.1
Length=589068
Score E
Sequences producing significant alignments: (Bits) Value
seq26972 104 9e-17
seq20929 104 9e-17
seq8669 104 9e-17
>seq26972
Length=214529
Score = 104 bits (114), Expect = 9e-17
Identities = 112/146 (77%), Gaps = 2/146 (1%)
Strand=Plus/Minus
Query 364425 CAATAGTCATACGAGAGGGAATGGAGAGAGGGTTGATGATGATGTCAGGCACCATGCCGT 364484
|||| ||||| || || || |||| ||||||||||||||||||| || || || |
Sbjct 156063 CAATGGTCATTCGTGAAGGGATGGCATGAGGGTTGATGATGATGTCCGGAGTGATACCCT 156004
Query 364485 CAGCGGTAAAGGGCATATCTT-CGGGAGGAACGATGAGACCAATGGTTCCCTTTTGCGCA 364543
| | ||| |||||||| |||| | || || ||| ||| |||||| ||||| || || |
Sbjct 156003 CCGAGGTGAAGGGCATGTCTTCCTGGCGGTACG-TGACACCAATCGTTCCTTTCTGACCG 155945
Query 364544 TAGCGAGAAGCAAACTTGTCGCCAAT 364569
| |||||||||||||||||||| ||
Sbjct 155944 TGACGAGAAGCAAACTTGTCGCCGAT 155919
>seq20929
Length=43971
Score = 104 bits (114), Expect = 9e-17
Identities = 112/146 (77%), Gaps = 2/146 (1%)
Strand=Plus/Minus
Query 364425 CAATAGTCATACGAGAGGGAATGGAGAGAGGGTTGATGATGATGTCAGGCACCATGCCGT 364484
|||| ||||| || || || |||| ||||||||||||||||||| || || || |
Sbjct 29003 CAATGGTCATTCGTGAAGGGATGGCATGAGGGTTGATGATGATGTCCGGAGTGATACCCT 28944
Query 364485 CAGCGGTAAAGGGCATATCTT-CGGGAGGAACGATGAGACCAATGGTTCCCTTTTGCGCA 364543
| | ||| |||||||| |||| | || || ||| ||| |||||| ||||| || || |
Sbjct 28943 CCGAGGTGAAGGGCATGTCTTCCTGGCGGTACG-TGACACCAATCGTTCCTTTCTGACCG 28885
Query 364544 TAGCGAGAAGCAAACTTGTCGCCAAT 364569
| |||||||||||||||||||| ||
Sbjct 28884 TGACGAGAAGCAAACTTGTCGCCGAT 28859
>seq8669
Length=5455
Score = 104 bits (114), Expect = 9e-17
Identities = 112/146 (77%), Gaps = 2/146 (1%)
Strand=Plus/Plus
Query 364425 CAATAGTCATACGAGAGGGAATGGAGAGAGGGTTGATGATGATGTCAGGCACCATGCCGT 364484
|||| ||||| || || || |||| ||||||||||||||||||| || || || |
Sbjct 86 CAATGGTCATTCGTGAAGGGATGGCATGAGGGTTGATGATGATGTCCGGAGTGATACCCT 145
Query 364485 CAGCGGTAAAGGGCATATCTT-CGGGAGGAACGATGAGACCAATGGTTCCCTTTTGCGCA 364543
| | ||| |||||||| |||| | || || ||| ||| |||||| ||||| || || |
Sbjct 146 CCGAGGTGAAGGGCATGTCTTCCTGGCGGTACG-TGACACCAATCGTTCCTTTCTGACCG 204
Query 364544 TAGCGAGAAGCAAACTTGTCGCCAAT 364569
| |||||||||||||||||||| ||
Sbjct 205 TGACGAGAAGCAAACTTGTCGCCGAT 230
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 1884208240845333
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |