Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Verticillium_20longisporum_20[genbank_20GCA_5F001268165.1_202015-08- 07] 38,382 sequences; 100,520,033 total letters Query= AAMG01000185.1 Length=266 Score E Sequences producing significant alignments: (Bits) Value seq9080 273 3e-71 seq38272 149 9e-34 >seq9080 Length=8040 Score = 273 bits (302), Expect = 3e-71 Identities = 201/229 (88%), Gaps = 5/229 (2%) Strand=Plus/Minus Query 1 GTACAAAGGGCAGGGACGTAGTCAACGCGAGCTTGATGACTCGCGCTTACTAGGAATTTC 60 |||||||||||||||||||| ||||||| |||| ||||||| |||||||||||| ||| | Sbjct 3693 GTACAAAGGGCAGGGACGTAATCAACGCAAGCT-GATGACTTGCGCTTACTAGGGATT-C 3636 Query 61 CTCGTTGAAGACCAACAATTGCAATGATCTATCCCCATCACGATGAAATTTCA-AAGATT 119 ||||||||||| ||| |||||||||| |||||||||| ||||| | ||||| |||||| Sbjct 3635 CTCGTTGAAGAGCAATAATTGCAATGCTCTATCCCCAGCACGACGGGGTTTCACAAGATT 3576 Query 120 ACCCGGACCTGTCGGCCAAGGTGATAGACTCGTTGAATACATCAGTGTAGCGCGCGTGCG 179 |||||||||| |||||||||| || |||| || | |||||||| |||||||||| Sbjct 3575 ACCCGGACCTTTCGGCCAAGGCAGTA--CTCGCTGGCCCCGTCAGTGTAACGCGCGTGCG 3518 Query 180 GCCCAGAACATCTAAGGGCATCACAGACCTGTTATTGCCTCAAACTTCC 228 ||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 3517 GCCCAGAACATCTAAGGGCATCACAGACCTGTTATTGCCTCAAACTTCC 3469 >seq38272 Length=182251 Score = 149 bits (164), Expect = 9e-34 Identities = 172/227 (76%), Gaps = 5/227 (2%) Strand=Plus/Plus Query 2 TACAAAGGGCAGGGACGTAGTCAACGCGAGCTTGATGACTCGCGCTTACTAGGAATTTCC 61 || |||||| ||||||||| | |||| |||| || ||| || |||||||| ||| || Sbjct 8373 TATAAAGGGTAGGGACGTAATTAACGTAAGCTA-ATAACTTACGTTTACTAGGGATT-CC 8430 Query 62 TCGTTGAAGACCAACAATTGCAATGATCTATCCCCATCACGATGAAATTTCA-AAGATTA 120 ||||| |||| || |||| |||| ||||||| | | | | ||| | ||||||| Sbjct 8431 TCGTTAAAGAGTAATAATTATAATGCTCTATCCTTAATATAACGGGGTTTTATAAGATTA 8490 Query 121 CCCGGACCTGTCGGCCAAGGTGATAGACTCGTTGAATACATCAGTGTAGCGCGCGTGCGG 180 ||||||||| ||||| ||||| || |||| | | | |||||| |||||||||| Sbjct 8491 CCCGGACCTTTCGGCTAAGGTAGTA--CTCGCTAGCCCCGTTAGTGTAATGCGCGTGCGG 8548 Query 181 CCCAGAACATCTAAGGGCATCACAGACCTGTTATTGCCTCAAACTTC 227 || |||| |||||||||||| | |||||| ||||||||| ||||||| Sbjct 8549 CCTAGAATATCTAAGGGCATTATAGACCTATTATTGCCTTAAACTTC 8595 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 751720387130