Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Verticillium_20longisporum_20[genbank_20GCA_5F001268165.1_202015-08-
07] 38,382 sequences; 100,520,033 total letters
Query= AAMG01000185.1
Length=266
Score E
Sequences producing significant alignments: (Bits) Value
seq9080 273 3e-71
seq38272 149 9e-34
>seq9080
Length=8040
Score = 273 bits (302), Expect = 3e-71
Identities = 201/229 (88%), Gaps = 5/229 (2%)
Strand=Plus/Minus
Query 1 GTACAAAGGGCAGGGACGTAGTCAACGCGAGCTTGATGACTCGCGCTTACTAGGAATTTC 60
|||||||||||||||||||| ||||||| |||| ||||||| |||||||||||| ||| |
Sbjct 3693 GTACAAAGGGCAGGGACGTAATCAACGCAAGCT-GATGACTTGCGCTTACTAGGGATT-C 3636
Query 61 CTCGTTGAAGACCAACAATTGCAATGATCTATCCCCATCACGATGAAATTTCA-AAGATT 119
||||||||||| ||| |||||||||| |||||||||| ||||| | ||||| ||||||
Sbjct 3635 CTCGTTGAAGAGCAATAATTGCAATGCTCTATCCCCAGCACGACGGGGTTTCACAAGATT 3576
Query 120 ACCCGGACCTGTCGGCCAAGGTGATAGACTCGTTGAATACATCAGTGTAGCGCGCGTGCG 179
|||||||||| |||||||||| || |||| || | |||||||| ||||||||||
Sbjct 3575 ACCCGGACCTTTCGGCCAAGGCAGTA--CTCGCTGGCCCCGTCAGTGTAACGCGCGTGCG 3518
Query 180 GCCCAGAACATCTAAGGGCATCACAGACCTGTTATTGCCTCAAACTTCC 228
|||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 3517 GCCCAGAACATCTAAGGGCATCACAGACCTGTTATTGCCTCAAACTTCC 3469
>seq38272
Length=182251
Score = 149 bits (164), Expect = 9e-34
Identities = 172/227 (76%), Gaps = 5/227 (2%)
Strand=Plus/Plus
Query 2 TACAAAGGGCAGGGACGTAGTCAACGCGAGCTTGATGACTCGCGCTTACTAGGAATTTCC 61
|| |||||| ||||||||| | |||| |||| || ||| || |||||||| ||| ||
Sbjct 8373 TATAAAGGGTAGGGACGTAATTAACGTAAGCTA-ATAACTTACGTTTACTAGGGATT-CC 8430
Query 62 TCGTTGAAGACCAACAATTGCAATGATCTATCCCCATCACGATGAAATTTCA-AAGATTA 120
||||| |||| || |||| |||| ||||||| | | | | ||| | |||||||
Sbjct 8431 TCGTTAAAGAGTAATAATTATAATGCTCTATCCTTAATATAACGGGGTTTTATAAGATTA 8490
Query 121 CCCGGACCTGTCGGCCAAGGTGATAGACTCGTTGAATACATCAGTGTAGCGCGCGTGCGG 180
||||||||| ||||| ||||| || |||| | | | |||||| ||||||||||
Sbjct 8491 CCCGGACCTTTCGGCTAAGGTAGTA--CTCGCTAGCCCCGTTAGTGTAATGCGCGTGCGG 8548
Query 181 CCCAGAACATCTAAGGGCATCACAGACCTGTTATTGCCTCAAACTTC 227
|| |||| |||||||||||| | |||||| ||||||||| |||||||
Sbjct 8549 CCTAGAATATCTAAGGGCATTATAGACCTATTATTGCCTTAAACTTC 8595
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 751720387130
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |