Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Verticillium_20longisporum_20[genbank_20GCA_5F001268165.1_202015-08- 07] 38,382 sequences; 100,520,033 total letters Query= AAMG01000278.1 Length=318 Score E Sequences producing significant alignments: (Bits) Value seq9080 412 6e-113 seq38272 235 1e-59 >seq9080 Length=8040 Score = 412 bits (456), Expect = 6e-113 Identities = 282/315 (90%), Gaps = 2/315 (1%) Strand=Plus/Plus Query 5 TGGTCCGGCCGGGCCTTT-CCTTCTGGGGATCCGCATGCCCTTCACTGGGTGTGCCGGGG 63 |||| |||||||| ||| ||||||| ||| |||||| ||||||||||| ||| ||||| Sbjct 1889 TGGTTCGGCCGGGGCTTCACCTTCTGCGGAACCGCATCTCCTTCACTGGGGGTGTCGGGG 1948 Query 64 AGCCAGGACTTTTACTTTGAAAAAATTAGAGTGTTCAAAGCAGGCCTTTGCTCGAATACA 123 | |||||| ||||||||||||||||||||||| || | |||||||| |||||||||||| Sbjct 1949 AAACAGGACGTTTACTTTGAAAAAATTAGAGTGCTCCAGGCAGGCCTATGCTCGAATACA 2008 Query 124 TTAGCATGGAATAATAGAATAGGACGTGCGGTTCTATTTTGTTGGTTTCTAGGACCGCCG 183 ||||||||||||||| |||||||||||| ||| ||||| |||||||||||||||||||| Sbjct 2009 TTAGCATGGAATAATGGAATAGGACGTGTGGTCTTATTTCGTTGGTTTCTAGGACCGCCG 2068 Query 184 TAATGATTAATAGGGATAGTCGGGGGTGTCAGTATTCAATTGTCAGAGGTGAAATTCTTG 243 |||||||||||||||| ||||||||| |||||||||||| ||||||||||||||||||| Sbjct 2069 TAATGATTAATAGGGACAGTCGGGGGCATCAGTATTCAATCGTCAGAGGTGAAATTCTTG 2128 Query 244 GATTTATTGAAGACTAACTACTGCGAAAGCGTTCACCAAGGATGTTTTCATTAATCAGTG 303 ||| ||||||||||||||||||||||||| || ||||||||||||||||| ||||| | Sbjct 2129 GATCGATTGAAGACTAACTACTGCGAAAGCATTTGCCAAGGATGTTTTCATTTATCAG-G 2187 Query 304 AACGAAAGTTAGGGG 318 ||||||||||||||| Sbjct 2188 AACGAAAGTTAGGGG 2202 >seq38272 Length=182251 Score = 235 bits (260), Expect = 1e-59 Identities = 233/300 (78%), Gaps = 1/300 (0%) Strand=Plus/Minus Query 15 GGGCCTTTCCTTCTGGGGATCCGCATGCCCTTCACTGGGTGTGCCGGGGAGCCAGGACTT 74 |||| || |||||| ||| ||| || |||| ||| || || |||| ||||| | Sbjct 9317 GGGCTTTACCTTCTACGGAACCGTATCTCCTTTACTAGGGGTATTAGGGAAATAGGACGT 9258 Query 75 TTACTTTGAAAAAATTAGAGTGTTCAAAGCAGGCCTTTGCTCGAATACATTAGCATGGAA 134 ||||||| ||||||||||||| || | | |||| | | |||||||| ||||| || ||| Sbjct 9257 TTACTTTAAAAAAATTAGAGTACTCTAGGTAGGCTTATACTCGAATATATTAGTATAGAA 9198 Query 135 TAATAGAATAGGACGTGCGGTTCTATTTTGTTGGTTTCTAGGACCGCCGTAATGATTAAT 194 |||||||||||||||| || ||||| ||| ||||||||||||||||||| |||||| Sbjct 9197 TAATAGAATAGGACGTATAGTCTTATTTCGTTAATTTCTAGGACCGCCGTAATAATTAAT 9138 Query 195 AGGGATAGTCGGGGGTGTCAGTATTCAATTGTCAGAGGTGAAATTCTTGGATTTATTGAA 254 ||||||| ||||||| | | |||| |||| | | | ||||||||||| ||| ||| || Sbjct 9137 AGGGATAATCGGGGGCATTAATATTTAATTATTAAAAGTGAAATTCTTAGATCGATTAAA 9078 Query 255 GACTAACTACTGCGAAAGCGTTCACCAAGGATGTTTTCATTAATCAGTGAACGAAAGTTA 314 || ||| || | ||||||| || || || ||| |||| ||| || || |||||||||||| Sbjct 9077 GATTAATTATTACGAAAGCATTTACTAAAGATATTTTTATTTATTAG-GAACGAAAGTTA 9019 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 914848727936