Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Verticillium_20longisporum_20[genbank_20GCA_5F001268165.1_202015-08- 07] 38,382 sequences; 100,520,033 total letters Query= AAMG01000304.1 Length=683 Score E Sequences producing significant alignments: (Bits) Value seq9080 616 6e-174 seq38272 325 2e-86 seq34861 87.8 7e-15 >seq9080 Length=8040 Score = 616 bits (682), Expect = 6e-174 Identities = 543/666 (82%), Gaps = 15/666 (2%) Strand=Plus/Plus Query 23 TGTGAAGCTCCTTCGACGAGTCGAGTTGTTTGGGAATGCAGCTCTAAATGGGAGGTAAAT 82 ||||||||||| |||||||||||||| |||||||||||| ||||||| |||||||| | Sbjct 4560 TGTGAAGCTCCCTCGACGAGTCGAGTAGTTTGGGAATGCTGCTCTAAG-GGGAGGTATAC 4618 Query 83 TTCTTCTAAAGCTAAATATTGGCCAGAGACCGATAGCGCACAAGTAGAGTGATCGAAAGA 142 | |||| || |||||||| ||| |||||||||||||||||||||||||||||||||||| Sbjct 4619 TCCTTCCAAGGCTAAATACCGGCTAGAGACCGATAGCGCACAAGTAGAGTGATCGAAAGA 4678 Query 143 TGAAAAGCACTTTGGAAAGAGAGTTAAAAAGCACGTGAAATTGTTGAAAGGGAAGCGCTT 202 ||||||| |||||| ||||||||| ||| |||||||||||||||| ||||||||||||| Sbjct 4679 TGAAAAGTACTTTGAAAAGAGAGTCAAACAGCACGTGAAATTGTTAAAAGGGAAGCGCTC 4738 Query 203 GCAACCAGACTTGCCCGCAGTTGCTCAACCGGCCCCTCGGCC-GGTGCACTCTTCTGCGG 261 || ||||||| || | || | |||||| | || | || || |||||| | | | Sbjct 4739 GCTACCAGACGTGGGTTCGGTGGTTCAACCAGGTCCATGACCTGGGGCACTCCGCCG-GC 4797 Query 262 TCAGGCCAGCATCAGCT--CGGGCGGTCGGATAAAGGCCCCGGGAATGTGGCCC-CCTTC 318 |||||||||||||||| | | ||| || |||||| |||||||||||| | ||||| Sbjct 4798 CCAGGCCAGCATCAGCTTTCCGTCGG--GGGCAAAGGCGTCGGGAATGTGGCTCTCCTTC 4855 Query 319 GGGGG-GTGTTATAGCCCGGGGTGGAATGCGGCCCGCCTGGACTGAGGTCCGCGCTCCGG 377 ||||| ||||||||||||| | | || | || || ||||||| ||||||||| Sbjct 4856 GGGGGAGTGTTATAGCCCGTCGCGTCATACTCTTCGGGGGG-CTGAGGTACGCGCTCCG- 4913 Query 378 CTAGGATGCTGGCGTAATGGTTGTAAGCGGCCCGTCTTGGAACACGGACCAAGGAGTCTA 437 | ||||||||||||||||||| | || | ||||||||| |||||||||||||||||| | Sbjct 4914 CAAGGATGCTGGCGTAATGGTAGCTAGTGACCCGTCTTGAAACACGGACCAAGGAGTCAA 4973 Query 438 ACATCTATGCGAGTGTTTGGGTGTCAAACCCGTGCGCGTAATGAAAGTGAACGGAGGTGG 497 | | | |||||||| ||| || |||||| ||||| |||||||||||||| ||||| Sbjct 4974 CCTTATGTGCGAGTGCCCGGGCGTAAAACCCCAGCGCGGAATGAAAGTGAACGTAGGTGA 5033 Query 498 GAACCCGTGAGGGTGCACCATCGACCGATCCTGATGTCTTCGGATGGATTTGAGTAAGAG 557 || | || ||| || ||||||||||||||||| ||||| |||||||||| |||| Sbjct 5034 GAGCTTC----GGCGCATCACCGACCGATCCTGATGTCCTCGGACGGATTTGAGTGAGAG 5089 Query 558 CATAGCTGTTGGGACCCGAAAGATGGTGAACTATGCCTGAATAGGGTGAAGCCAGAGGAA 617 |||| | | |||||||||||| | |||||||||| || ||||||||||||||||||| Sbjct 5090 CATATAGGGTTGGACCCGAAAGAAGATGAACTATGCGTGTGTAGGGTGAAGCCAGAGGAA 5149 Query 618 ACTCTGGTGGAGGCTCGCAGCGGTTCTGGCGTGCAAATCGATCGTCAAATTTGGGTATAG 677 |||||||||||||||||||||||||||| |||||||||||||||||||| || | || | Sbjct 5150 ACTCTGGTGGAGGCTCGCAGCGGTTCTGACGTGCAAATCGATCGTCAAACATGCGCATGG 5209 Query 678 GGGCGA 683 |||||| Sbjct 5210 GGGCGA 5215 >seq38272 Length=182251 Score = 325 bits (360), Expect = 2e-86 Identities = 476/661 (72%), Gaps = 13/661 (2%) Strand=Plus/Minus Query 27 AAGCTCCTTCGACGAGTCGAGTTGTTTGGGAATGCAGCTCTAAATGGGAGGTAAATTTCT 86 ||||||| |||| |||||||| |||| ||||| | ||||||| |||||||| | | || Sbjct 7501 AAGCTCCCTCGATAAGTCGAGTAGTTTAGGAATACTACTCTAAA-GGGAGGTATACTCCT 7443 Query 87 TCTAAAGCTAAATATTGGCCAGAGACCGATAGCGCACAAGTAGAGTGATCGAAAGATGAA 146 ||||| |||||||| | || ||||||||||||| | || |||||| |||||||||| || Sbjct 7442 TCTAAGGCTAAATACTAGCTAGAGACCGATAGCATATAAATAGAGTAATCGAAAGATAAA 7383 Query 147 AAGCACTTTGGAAAGAGAGTTAAAAAGCACGTGAAATTGTTGAAAGGGAAGCGCTTGCAA 206 ||| ||||| ||||||| ||||| || | | ||||| || ||||||||||||| || | Sbjct 7382 AAGTACTTTAAAAAGAGAATTAAATAGTATATAAAATTATTAAAAGGGAAGCGCTCGCTA 7323 Query 207 CCAGACTTGCCCGCAGTTGCTCAACC-GGCCCCTCGGCCGGTGCACTCTTCTGCGGTC-A 264 | |||| | | || | ||| || | | | |||||| | ||| | | Sbjct 7322 CTAGACGTAGGTTCGGTAATTTAACTAGGTTTATAACCTAGGGCACTCCGC--CGGCCTA 7265 Query 265 GGCCAGCATCAGCTCGGGCGGTCGGATAAAGGCCCCGGGAATGTGGCCC-CCTTCGGGGG 323 ||| ||||| |||| || |||||| ||||||| | || | ||||| |||| Sbjct 7264 GGCTAGCATTAGCTTTCTATTAAGGGCAAAGGCGTCGGGAATATAGCTCTCCTTCAGGGG 7205 Query 324 -GTGTTATAGCCCGGGGTGGAATGCGGCCCGCCTGGACTGAGGTCCGCGCTCCGGCTAGG 382 || ||||||||| || || | | || || |||| ||||||||| ||| Sbjct 7204 AGTATTATAGCCCATCGTATTATACC-CTTTAGGGGGCTAAGGTACGCGCTCCGTA-AGG 7147 Query 383 ATGCTGGCGTAATGGTTGTAAGCGGCCCGTCTTGGAACACGGACCAAGGAGTCTAACATC 442 || || || |||| || | || ||||||||| || |||||| |||||||| | | | Sbjct 7146 ATACTAGCATAATAGTAGCTAGTAACCCGTCTTGAAATACGGACTAAGGAGTCAATCTTA 7087 Query 443 TATGCGAGTGTTTGGGTGTCAAACCCGTGCGCGTAATGAAAGTGAACGGAGGTGGGAACC 502 ||| ||| | ||| || |||||| ||||| ||||||||| |||| | || || Sbjct 7086 TATACGAATACCCGGGCGTAAAACCCTAGCGCGGAATGAAAGTAAACGTAAGTA--AAAG 7029 Query 503 CGTGAGGGTGCACCATCGACCGATCCTGATGTCTTCGGATGGATTTGAGTAAGAGCATAG 562 | | || || | | ||||||||||| || || ||||| |||||| |||||||| ||| Sbjct 7028 CTTTAGCGT--ATTACCGACCGATCCTAATATCCTCGGACGGATTTAAGTAAGAGTATAT 6971 Query 563 CTGTTGGGACCCGAAAGATGGTGAACTATGCCTGAATAGGGTGAAGCCAGAGGAAACTCT 622 | | ||||||||||| | | |||||| | | ||| ||| |||| |||||||||||| Sbjct 6970 AGGGTTAGACCCGAAAGAAGATAAACTATACGTATATAAGGTAAAGCTAGAGGAAACTCT 6911 Query 623 GGTGGAGGCTCGCAGCGGTTCTGGCGTGCAAATCGATCGTCAAATTTGGGTATAGGGGCG 682 || |||||||| ||||||||| ||| ||||||||||| |||| | ||||||||||| Sbjct 6910 AGTAGAGGCTCGTAGCGGTTCTAACGTATAAATCGATCGTTAAATATACGTATAGGGGCG 6851 Query 683 A 683 | Sbjct 6850 A 6850 >seq34861 Length=450 Score = 87.8 bits (96), Expect = 7e-15 Identities = 71/86 (83%), Gaps = 0/86 (0%) Strand=Plus/Minus Query 598 ATAGGGTGAAGCCAGAGGAAACTCTGGTGGAGGCTCGCAGCGGTTCTGGCGTGCAAATCG 657 |||||||||||| |||||||||||| || |||||||| ||||||||| | |||||| Sbjct 181 ATAGGGTGAAGCTAGAGGAAACTCTAGTAGAGGCTCGTAGCGGTTCTAATATATAAATCG 122 Query 658 ATCGTCAAATTTGGGTATAGGGGCGA 683 ||||| |||| | ||||||||||| Sbjct 121 ATCGTTAAATATATATATAGGGGCGA 96 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 2079176706100