Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Verticillium_20longisporum_20[genbank_20GCA_5F001268165.1_202015-08-
07] 38,382 sequences; 100,520,033 total letters
Query= AAMG01000304.1
Length=683
Score E
Sequences producing significant alignments: (Bits) Value
seq9080 616 6e-174
seq38272 325 2e-86
seq34861 87.8 7e-15
>seq9080
Length=8040
Score = 616 bits (682), Expect = 6e-174
Identities = 543/666 (82%), Gaps = 15/666 (2%)
Strand=Plus/Plus
Query 23 TGTGAAGCTCCTTCGACGAGTCGAGTTGTTTGGGAATGCAGCTCTAAATGGGAGGTAAAT 82
||||||||||| |||||||||||||| |||||||||||| ||||||| |||||||| |
Sbjct 4560 TGTGAAGCTCCCTCGACGAGTCGAGTAGTTTGGGAATGCTGCTCTAAG-GGGAGGTATAC 4618
Query 83 TTCTTCTAAAGCTAAATATTGGCCAGAGACCGATAGCGCACAAGTAGAGTGATCGAAAGA 142
| |||| || |||||||| ||| ||||||||||||||||||||||||||||||||||||
Sbjct 4619 TCCTTCCAAGGCTAAATACCGGCTAGAGACCGATAGCGCACAAGTAGAGTGATCGAAAGA 4678
Query 143 TGAAAAGCACTTTGGAAAGAGAGTTAAAAAGCACGTGAAATTGTTGAAAGGGAAGCGCTT 202
||||||| |||||| ||||||||| ||| |||||||||||||||| |||||||||||||
Sbjct 4679 TGAAAAGTACTTTGAAAAGAGAGTCAAACAGCACGTGAAATTGTTAAAAGGGAAGCGCTC 4738
Query 203 GCAACCAGACTTGCCCGCAGTTGCTCAACCGGCCCCTCGGCC-GGTGCACTCTTCTGCGG 261
|| ||||||| || | || | |||||| | || | || || |||||| | | |
Sbjct 4739 GCTACCAGACGTGGGTTCGGTGGTTCAACCAGGTCCATGACCTGGGGCACTCCGCCG-GC 4797
Query 262 TCAGGCCAGCATCAGCT--CGGGCGGTCGGATAAAGGCCCCGGGAATGTGGCCC-CCTTC 318
|||||||||||||||| | | ||| || |||||| |||||||||||| | |||||
Sbjct 4798 CCAGGCCAGCATCAGCTTTCCGTCGG--GGGCAAAGGCGTCGGGAATGTGGCTCTCCTTC 4855
Query 319 GGGGG-GTGTTATAGCCCGGGGTGGAATGCGGCCCGCCTGGACTGAGGTCCGCGCTCCGG 377
||||| ||||||||||||| | | || | || || ||||||| |||||||||
Sbjct 4856 GGGGGAGTGTTATAGCCCGTCGCGTCATACTCTTCGGGGGG-CTGAGGTACGCGCTCCG- 4913
Query 378 CTAGGATGCTGGCGTAATGGTTGTAAGCGGCCCGTCTTGGAACACGGACCAAGGAGTCTA 437
| ||||||||||||||||||| | || | ||||||||| |||||||||||||||||| |
Sbjct 4914 CAAGGATGCTGGCGTAATGGTAGCTAGTGACCCGTCTTGAAACACGGACCAAGGAGTCAA 4973
Query 438 ACATCTATGCGAGTGTTTGGGTGTCAAACCCGTGCGCGTAATGAAAGTGAACGGAGGTGG 497
| | | |||||||| ||| || |||||| ||||| |||||||||||||| |||||
Sbjct 4974 CCTTATGTGCGAGTGCCCGGGCGTAAAACCCCAGCGCGGAATGAAAGTGAACGTAGGTGA 5033
Query 498 GAACCCGTGAGGGTGCACCATCGACCGATCCTGATGTCTTCGGATGGATTTGAGTAAGAG 557
|| | || ||| || ||||||||||||||||| ||||| |||||||||| ||||
Sbjct 5034 GAGCTTC----GGCGCATCACCGACCGATCCTGATGTCCTCGGACGGATTTGAGTGAGAG 5089
Query 558 CATAGCTGTTGGGACCCGAAAGATGGTGAACTATGCCTGAATAGGGTGAAGCCAGAGGAA 617
|||| | | |||||||||||| | |||||||||| || |||||||||||||||||||
Sbjct 5090 CATATAGGGTTGGACCCGAAAGAAGATGAACTATGCGTGTGTAGGGTGAAGCCAGAGGAA 5149
Query 618 ACTCTGGTGGAGGCTCGCAGCGGTTCTGGCGTGCAAATCGATCGTCAAATTTGGGTATAG 677
|||||||||||||||||||||||||||| |||||||||||||||||||| || | || |
Sbjct 5150 ACTCTGGTGGAGGCTCGCAGCGGTTCTGACGTGCAAATCGATCGTCAAACATGCGCATGG 5209
Query 678 GGGCGA 683
||||||
Sbjct 5210 GGGCGA 5215
>seq38272
Length=182251
Score = 325 bits (360), Expect = 2e-86
Identities = 476/661 (72%), Gaps = 13/661 (2%)
Strand=Plus/Minus
Query 27 AAGCTCCTTCGACGAGTCGAGTTGTTTGGGAATGCAGCTCTAAATGGGAGGTAAATTTCT 86
||||||| |||| |||||||| |||| ||||| | ||||||| |||||||| | | ||
Sbjct 7501 AAGCTCCCTCGATAAGTCGAGTAGTTTAGGAATACTACTCTAAA-GGGAGGTATACTCCT 7443
Query 87 TCTAAAGCTAAATATTGGCCAGAGACCGATAGCGCACAAGTAGAGTGATCGAAAGATGAA 146
||||| |||||||| | || ||||||||||||| | || |||||| |||||||||| ||
Sbjct 7442 TCTAAGGCTAAATACTAGCTAGAGACCGATAGCATATAAATAGAGTAATCGAAAGATAAA 7383
Query 147 AAGCACTTTGGAAAGAGAGTTAAAAAGCACGTGAAATTGTTGAAAGGGAAGCGCTTGCAA 206
||| ||||| ||||||| ||||| || | | ||||| || ||||||||||||| || |
Sbjct 7382 AAGTACTTTAAAAAGAGAATTAAATAGTATATAAAATTATTAAAAGGGAAGCGCTCGCTA 7323
Query 207 CCAGACTTGCCCGCAGTTGCTCAACC-GGCCCCTCGGCCGGTGCACTCTTCTGCGGTC-A 264
| |||| | | || | ||| || | | | |||||| | ||| | |
Sbjct 7322 CTAGACGTAGGTTCGGTAATTTAACTAGGTTTATAACCTAGGGCACTCCGC--CGGCCTA 7265
Query 265 GGCCAGCATCAGCTCGGGCGGTCGGATAAAGGCCCCGGGAATGTGGCCC-CCTTCGGGGG 323
||| ||||| |||| || |||||| ||||||| | || | ||||| ||||
Sbjct 7264 GGCTAGCATTAGCTTTCTATTAAGGGCAAAGGCGTCGGGAATATAGCTCTCCTTCAGGGG 7205
Query 324 -GTGTTATAGCCCGGGGTGGAATGCGGCCCGCCTGGACTGAGGTCCGCGCTCCGGCTAGG 382
|| ||||||||| || || | | || || |||| ||||||||| |||
Sbjct 7204 AGTATTATAGCCCATCGTATTATACC-CTTTAGGGGGCTAAGGTACGCGCTCCGTA-AGG 7147
Query 383 ATGCTGGCGTAATGGTTGTAAGCGGCCCGTCTTGGAACACGGACCAAGGAGTCTAACATC 442
|| || || |||| || | || ||||||||| || |||||| |||||||| | | |
Sbjct 7146 ATACTAGCATAATAGTAGCTAGTAACCCGTCTTGAAATACGGACTAAGGAGTCAATCTTA 7087
Query 443 TATGCGAGTGTTTGGGTGTCAAACCCGTGCGCGTAATGAAAGTGAACGGAGGTGGGAACC 502
||| ||| | ||| || |||||| ||||| ||||||||| |||| | || ||
Sbjct 7086 TATACGAATACCCGGGCGTAAAACCCTAGCGCGGAATGAAAGTAAACGTAAGTA--AAAG 7029
Query 503 CGTGAGGGTGCACCATCGACCGATCCTGATGTCTTCGGATGGATTTGAGTAAGAGCATAG 562
| | || || | | ||||||||||| || || ||||| |||||| |||||||| |||
Sbjct 7028 CTTTAGCGT--ATTACCGACCGATCCTAATATCCTCGGACGGATTTAAGTAAGAGTATAT 6971
Query 563 CTGTTGGGACCCGAAAGATGGTGAACTATGCCTGAATAGGGTGAAGCCAGAGGAAACTCT 622
| | ||||||||||| | | |||||| | | ||| ||| |||| ||||||||||||
Sbjct 6970 AGGGTTAGACCCGAAAGAAGATAAACTATACGTATATAAGGTAAAGCTAGAGGAAACTCT 6911
Query 623 GGTGGAGGCTCGCAGCGGTTCTGGCGTGCAAATCGATCGTCAAATTTGGGTATAGGGGCG 682
|| |||||||| ||||||||| ||| ||||||||||| |||| | |||||||||||
Sbjct 6910 AGTAGAGGCTCGTAGCGGTTCTAACGTATAAATCGATCGTTAAATATACGTATAGGGGCG 6851
Query 683 A 683
|
Sbjct 6850 A 6850
>seq34861
Length=450
Score = 87.8 bits (96), Expect = 7e-15
Identities = 71/86 (83%), Gaps = 0/86 (0%)
Strand=Plus/Minus
Query 598 ATAGGGTGAAGCCAGAGGAAACTCTGGTGGAGGCTCGCAGCGGTTCTGGCGTGCAAATCG 657
|||||||||||| |||||||||||| || |||||||| ||||||||| | ||||||
Sbjct 181 ATAGGGTGAAGCTAGAGGAAACTCTAGTAGAGGCTCGTAGCGGTTCTAATATATAAATCG 122
Query 658 ATCGTCAAATTTGGGTATAGGGGCGA 683
||||| |||| | |||||||||||
Sbjct 121 ATCGTTAAATATATATATAGGGGCGA 96
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 2079176706100
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |