Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Verticillium_20longisporum_20[genbank_20GCA_5F001268165.1_202015-08-
07] 38,382 sequences; 100,520,033 total letters
Query= AAMG01000911.1
Length=280
Score E
Sequences producing significant alignments: (Bits) Value
seq9080 342 8e-92
seq38272 214 3e-53
>seq9080
Length=8040
Score = 342 bits (378), Expect = 8e-92
Identities = 236/266 (89%), Gaps = 1/266 (0%)
Strand=Plus/Minus
Query 1 TACTCGGTGGCTCCGTCAGTGTAGCGCGCGTGCGGCCCAGAACATCTAAGGGCATCACAG 60
|||||| |||| ||||||||||| ||||||||||||||||||||||||||||||||||||
Sbjct 3551 TACTCGCTGGCCCCGTCAGTGTAACGCGCGTGCGGCCCAGAACATCTAAGGGCATCACAG 3492
Query 61 ACCTGTTATTGCCTCAAACTTCCATTGGCTGGAAGCCAATAGTCCCTCTAAGAAGCCAGC 120
||||||||||||||||||||||||| |||| || ||| ||||||||||||||||| | ||
Sbjct 3491 ACCTGTTATTGCCTCAAACTTCCATCGGCTTGA-GCCGATAGTCCCTCTAAGAAGTCGGC 3433
Query 121 CACCAACCATAGTCGATGGGGCTATTTAGCAGGTTAAGGTCTCGTTCGTTATCGGAATTA 180
| ||| || || ||||||||||||||||||||||||||||||||| |||||
Sbjct 3432 GTACTACCGGGGTAATACGGACTATTTAGCAGGTTAAGGTCTCGTTCGTTATCGCAATTA 3373
Query 181 ACCAGACAAATCACTCCACCAACTAAGAACGGCCATGCACCACCACCCATAGAATCAAGA 240
| ||||||||||||||||||||||||||||||||||||||||||||||| | ||||||||
Sbjct 3372 AGCAGACAAATCACTCCACCAACTAAGAACGGCCATGCACCACCACCCACAAAATCAAGA 3313
Query 241 AAGAGCTATCAATCTGTCCTCCCTCG 266
||||||| |||||||||| |||||
Sbjct 3312 AAGAGCTCTCAATCTGTCAATCCTCG 3287
>seq38272
Length=182251
Score = 214 bits (236), Expect = 3e-53
Identities = 201/255 (79%), Gaps = 1/255 (0%)
Strand=Plus/Plus
Query 1 TACTCGGTGGCTCCGTCAGTGTAGCGCGCGTGCGGCCCAGAACATCTAAGGGCATCACAG 60
|||||| | || |||| |||||| |||||||||||| |||| |||||||||||| | ||
Sbjct 8514 TACTCGCTAGCCCCGTTAGTGTAATGCGCGTGCGGCCTAGAATATCTAAGGGCATTATAG 8573
Query 61 ACCTGTTATTGCCTCAAACTTCCATTGGCTGGAAGCCAATAGTCCCTCTAAGAAGCCAGC 120
|||| ||||||||| ||||||| ||| ||| || ||| ||||||| ||||||||| ||||
Sbjct 8574 ACCTATTATTGCCTTAAACTTCTATTAGCTTGA-GCCGATAGTCCTTCTAAGAAGTCAGC 8632
Query 121 CACCAACCATAGTCGATGGGGCTATTTAGCAGGTTAAGGTCTCGTTCGTTATCGGAATTA 180
||| || | ||||||| |||||||||||||||| |||||| |||||
Sbjct 8633 GTATTACCGGGGTAATATAGACTATTTAATAGGTTAAGGTCTCGTTTATTATCGTAATTA 8692
Query 181 ACCAGACAAATCACTCCACCAACTAAGAACGGCCATGCACCACCACCCATAGAATCAAGA 240
| ||| ||||||||| || ||||||||||||| || || || ||| ||| ||| ||||
Sbjct 8693 AGTAGATAAATCACTCTACTAACTAAGAACGGCTATATACTACTACCTATAAAATTAAGA 8752
Query 241 AAGAGCTATCAATCT 255
||||||| | |||||
Sbjct 8753 AAGAGCTCTTAATCT 8767
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 796503729342
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |