Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Verticillium_20longisporum_20[genbank_20GCA_5F001268165.1_202015-08- 07] 38,382 sequences; 100,520,033 total letters Query= AAMG01000911.1 Length=280 Score E Sequences producing significant alignments: (Bits) Value seq9080 342 8e-92 seq38272 214 3e-53 >seq9080 Length=8040 Score = 342 bits (378), Expect = 8e-92 Identities = 236/266 (89%), Gaps = 1/266 (0%) Strand=Plus/Minus Query 1 TACTCGGTGGCTCCGTCAGTGTAGCGCGCGTGCGGCCCAGAACATCTAAGGGCATCACAG 60 |||||| |||| ||||||||||| |||||||||||||||||||||||||||||||||||| Sbjct 3551 TACTCGCTGGCCCCGTCAGTGTAACGCGCGTGCGGCCCAGAACATCTAAGGGCATCACAG 3492 Query 61 ACCTGTTATTGCCTCAAACTTCCATTGGCTGGAAGCCAATAGTCCCTCTAAGAAGCCAGC 120 ||||||||||||||||||||||||| |||| || ||| ||||||||||||||||| | || Sbjct 3491 ACCTGTTATTGCCTCAAACTTCCATCGGCTTGA-GCCGATAGTCCCTCTAAGAAGTCGGC 3433 Query 121 CACCAACCATAGTCGATGGGGCTATTTAGCAGGTTAAGGTCTCGTTCGTTATCGGAATTA 180 | ||| || || ||||||||||||||||||||||||||||||||| ||||| Sbjct 3432 GTACTACCGGGGTAATACGGACTATTTAGCAGGTTAAGGTCTCGTTCGTTATCGCAATTA 3373 Query 181 ACCAGACAAATCACTCCACCAACTAAGAACGGCCATGCACCACCACCCATAGAATCAAGA 240 | ||||||||||||||||||||||||||||||||||||||||||||||| | |||||||| Sbjct 3372 AGCAGACAAATCACTCCACCAACTAAGAACGGCCATGCACCACCACCCACAAAATCAAGA 3313 Query 241 AAGAGCTATCAATCTGTCCTCCCTCG 266 ||||||| |||||||||| ||||| Sbjct 3312 AAGAGCTCTCAATCTGTCAATCCTCG 3287 >seq38272 Length=182251 Score = 214 bits (236), Expect = 3e-53 Identities = 201/255 (79%), Gaps = 1/255 (0%) Strand=Plus/Plus Query 1 TACTCGGTGGCTCCGTCAGTGTAGCGCGCGTGCGGCCCAGAACATCTAAGGGCATCACAG 60 |||||| | || |||| |||||| |||||||||||| |||| |||||||||||| | || Sbjct 8514 TACTCGCTAGCCCCGTTAGTGTAATGCGCGTGCGGCCTAGAATATCTAAGGGCATTATAG 8573 Query 61 ACCTGTTATTGCCTCAAACTTCCATTGGCTGGAAGCCAATAGTCCCTCTAAGAAGCCAGC 120 |||| ||||||||| ||||||| ||| ||| || ||| ||||||| ||||||||| |||| Sbjct 8574 ACCTATTATTGCCTTAAACTTCTATTAGCTTGA-GCCGATAGTCCTTCTAAGAAGTCAGC 8632 Query 121 CACCAACCATAGTCGATGGGGCTATTTAGCAGGTTAAGGTCTCGTTCGTTATCGGAATTA 180 ||| || | ||||||| |||||||||||||||| |||||| ||||| Sbjct 8633 GTATTACCGGGGTAATATAGACTATTTAATAGGTTAAGGTCTCGTTTATTATCGTAATTA 8692 Query 181 ACCAGACAAATCACTCCACCAACTAAGAACGGCCATGCACCACCACCCATAGAATCAAGA 240 | ||| ||||||||| || ||||||||||||| || || || ||| ||| ||| |||| Sbjct 8693 AGTAGATAAATCACTCTACTAACTAAGAACGGCTATATACTACTACCTATAAAATTAAGA 8752 Query 241 AAGAGCTATCAATCT 255 ||||||| | ||||| Sbjct 8753 AAGAGCTCTTAATCT 8767 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 796503729342