Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Verticillium_20longisporum_20[genbank_20GCA_5F001268165.1_202015-08- 07] 38,382 sequences; 100,520,033 total letters Query= AAMG01001634.1 Length=217 Score E Sequences producing significant alignments: (Bits) Value seq9080 138 1e-30 seq38272 89.7 6e-16 >seq9080 Length=8040 Score = 138 bits (152), Expect = 1e-30 Identities = 150/194 (77%), Gaps = 5/194 (3%) Strand=Plus/Minus Query 6 CTAGAAACCAACAAAATAGGGACGCACGTCCTATTCTATTATTCCATGCTAATGTATTCG 65 |||||||||||| ||||| | | |||||||||||| ||||||||||||||||||||||| Sbjct 2060 CTAGAAACCAACGAAATAAGACCACACGTCCTATTCCATTATTCCATGCTAATGTATTCG 2001 Query 66 GGCGTAAGCCTGCTTTGAACACTCTAATTTTCTCAAGGTAAAAGTCCTGGTTCCTCCGCA 125 || || |||||| | || |||||||||||| |||| ||||| |||||| |||| | || Sbjct 2000 AGCATAGGCCTGCCTGGAGCACTCTAATTTTTTCAAAGTAAACGTCCTGTTTCCCCGACA 1941 Query 126 -CACCAATGAAGG-CATACGGGCTCACCAAGAGGT--AGGGCTGGGTAATGCAGTACTCG 181 | ||| |||||| || | || || || |||| || | || | |||| | || Sbjct 1940 CCCCCAGTGAAGGAGATGC-GGTTCCGCAGAAGGTGAAGCCCCGGCCGAACCAGTGCACG 1882 Query 182 CCGTGAGGCGGACC 195 | |||||||||||| Sbjct 1881 CGGTGAGGCGGACC 1868 >seq38272 Length=182251 Score = 89.7 bits (98), Expect = 6e-16 Identities = 88/114 (77%), Gaps = 0/114 (0%) Strand=Plus/Plus Query 6 CTAGAAACCAACAAAATAGGGACGCACGTCCTATTCTATTATTCCATGCTAATGTATTCG 65 ||||||| ||| ||||| | ||||||||||||||||||| || ||||| |||||| Sbjct 9157 CTAGAAATTAACGAAATAAGACTATACGTCCTATTCTATTATTCTATACTAATATATTCG 9216 Query 66 GGCGTAAGCCTGCTTTGAACACTCTAATTTTCTCAAGGTAAAAGTCCTGGTTCC 119 | ||||||| | | || ||||||||||| | || ||||| ||||| |||| Sbjct 9217 AGTATAAGCCTACCTAGAGTACTCTAATTTTTTTAAAGTAAACGTCCTATTTCC 9270 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 594978689388