Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Verticillium_20longisporum_20[genbank_20GCA_5F001268165.1_202015-08- 07] 38,382 sequences; 100,520,033 total letters Query= AAMG01002186.1 Length=328 Score E Sequences producing significant alignments: (Bits) Value seq9080 398 1e-108 seq38272 233 4e-59 >seq9080 Length=8040 Score = 398 bits (440), Expect = 1e-108 Identities = 274/309 (89%), Gaps = 2/309 (1%) Strand=Plus/Plus Query 20 GAGCGAGACCTTAACCTGCTAAATAGCCAGGCCCGCTTTGGCGGGTCGCCGGCTTCTTAG 79 || ||||||||||||||||||||||| | | | || | ||||| |||||||| Sbjct 3386 GAACGAGACCTTAACCTGCTAAATAGTCCGTATTACCCCGGTAGTACGCCGACTTCTTAG 3445 Query 80 AGGGACTATCGGCTCAAGCCGATGGAAGTTTGAGGCAATAACAGGTCTGTGATGCCCTTA 139 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 3446 AGGGACTATCGGCTCAAGCCGATGGAAGTTTGAGGCAATAACAGGTCTGTGATGCCCTTA 3505 Query 140 GATGTTCTGGGCCGCACGCGCGCTACACTGACAGAGCCAACGAGTTCATCACCTTGGCCG 199 |||||||||||||||||||||| ||||||||| | |||| ||||| | | |||||||| Sbjct 3506 GATGTTCTGGGCCGCACGCGCGTTACACTGACGGGGCCAGCGAGTACTGC--CTTGGCCG 3563 Query 200 GAAGGTCTGGGTAATCTTGTTAAACTCTGTCGTGCTGGGGATAGAGCATTGCAATTATTG 259 |||||| |||||||||||| |||| | |||||||||||||||||||||||||||||||| Sbjct 3564 AAAGGTCCGGGTAATCTTGTGAAACCCCGTCGTGCTGGGGATAGAGCATTGCAATTATTG 3623 Query 260 CTCTTCAACGAGGAATGCCTAGTAAGCGCGTGTCATCAGCACGCGTTGATTACGTCCCTG 319 |||||||||||||||| |||||||||||| ||||||||| |||||||||||||||||| Sbjct 3624 CTCTTCAACGAGGAATCCCTAGTAAGCGCAAGTCATCAGCTTGCGTTGATTACGTCCCTG 3683 Query 320 CCCTTTGTA 328 ||||||||| Sbjct 3684 CCCTTTGTA 3692 >seq38272 Length=182251 Score = 233 bits (258), Expect = 4e-59 Identities = 210/263 (80%), Gaps = 2/263 (1%) Strand=Plus/Minus Query 66 CGCCGGCTTCTTAGAGGGACTATCGGCTCAAGCCGATGGAAGTTTGAGGCAATAACAGGT 125 ||| | ||||||||| ||||||||||||||||| || ||||||| ||||||||| |||| Sbjct 8633 CGCTGACTTCTTAGAAGGACTATCGGCTCAAGCTAATAGAAGTTTAAGGCAATAATAGGT 8574 Query 126 CTGTGATGCCCTTAGATGTTCTGGGCCGCACGCGCGCTACACTGACAGAGCCAACGAGTT 185 || | |||||||||||| |||| |||||||||||| |||||| || | || | ||||| Sbjct 8573 CTATAATGCCCTTAGATATTCTAGGCCGCACGCGCATTACACTAACGGGGCTAGCGAGT- 8515 Query 186 CATCACCTTGGCCGGAAGGTCTGGGTAATCTTGTTAAACTCTGTCGTGCTGGGGATAGAG 245 | ||||| |||| |||||| |||||||||| | |||| | || | | |||||||| Sbjct 8514 -ACTACCTTAGCCGAAAGGTCCGGGTAATCTTATAAAACCCCGTTATATTAAGGATAGAG 8456 Query 246 CATTGCAATTATTGCTCTTCAACGAGGAATGCCTAGTAAGCGCGTGTCATCAGCACGCGT 305 |||| ||||||| ||||| |||||||||| |||||||| || || || ||| ||| Sbjct 8455 CATTATAATTATTACTCTTTAACGAGGAATCCCTAGTAAACGTAAGTTATTAGCTTACGT 8396 Query 306 TGATTACGTCCCTGCCCTTTGTA 328 | ||||||||||| |||||| || Sbjct 8395 TAATTACGTCCCTACCCTTTATA 8373 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 946836445696