Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Verticillium_20longisporum_20[genbank_20GCA_5F001268165.1_202015-08-
07] 38,382 sequences; 100,520,033 total letters
Query= AAMG01002186.1
Length=328
Score E
Sequences producing significant alignments: (Bits) Value
seq9080 398 1e-108
seq38272 233 4e-59
>seq9080
Length=8040
Score = 398 bits (440), Expect = 1e-108
Identities = 274/309 (89%), Gaps = 2/309 (1%)
Strand=Plus/Plus
Query 20 GAGCGAGACCTTAACCTGCTAAATAGCCAGGCCCGCTTTGGCGGGTCGCCGGCTTCTTAG 79
|| ||||||||||||||||||||||| | | | || | ||||| ||||||||
Sbjct 3386 GAACGAGACCTTAACCTGCTAAATAGTCCGTATTACCCCGGTAGTACGCCGACTTCTTAG 3445
Query 80 AGGGACTATCGGCTCAAGCCGATGGAAGTTTGAGGCAATAACAGGTCTGTGATGCCCTTA 139
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 3446 AGGGACTATCGGCTCAAGCCGATGGAAGTTTGAGGCAATAACAGGTCTGTGATGCCCTTA 3505
Query 140 GATGTTCTGGGCCGCACGCGCGCTACACTGACAGAGCCAACGAGTTCATCACCTTGGCCG 199
|||||||||||||||||||||| ||||||||| | |||| ||||| | | ||||||||
Sbjct 3506 GATGTTCTGGGCCGCACGCGCGTTACACTGACGGGGCCAGCGAGTACTGC--CTTGGCCG 3563
Query 200 GAAGGTCTGGGTAATCTTGTTAAACTCTGTCGTGCTGGGGATAGAGCATTGCAATTATTG 259
|||||| |||||||||||| |||| | ||||||||||||||||||||||||||||||||
Sbjct 3564 AAAGGTCCGGGTAATCTTGTGAAACCCCGTCGTGCTGGGGATAGAGCATTGCAATTATTG 3623
Query 260 CTCTTCAACGAGGAATGCCTAGTAAGCGCGTGTCATCAGCACGCGTTGATTACGTCCCTG 319
|||||||||||||||| |||||||||||| ||||||||| ||||||||||||||||||
Sbjct 3624 CTCTTCAACGAGGAATCCCTAGTAAGCGCAAGTCATCAGCTTGCGTTGATTACGTCCCTG 3683
Query 320 CCCTTTGTA 328
|||||||||
Sbjct 3684 CCCTTTGTA 3692
>seq38272
Length=182251
Score = 233 bits (258), Expect = 4e-59
Identities = 210/263 (80%), Gaps = 2/263 (1%)
Strand=Plus/Minus
Query 66 CGCCGGCTTCTTAGAGGGACTATCGGCTCAAGCCGATGGAAGTTTGAGGCAATAACAGGT 125
||| | ||||||||| ||||||||||||||||| || ||||||| ||||||||| ||||
Sbjct 8633 CGCTGACTTCTTAGAAGGACTATCGGCTCAAGCTAATAGAAGTTTAAGGCAATAATAGGT 8574
Query 126 CTGTGATGCCCTTAGATGTTCTGGGCCGCACGCGCGCTACACTGACAGAGCCAACGAGTT 185
|| | |||||||||||| |||| |||||||||||| |||||| || | || | |||||
Sbjct 8573 CTATAATGCCCTTAGATATTCTAGGCCGCACGCGCATTACACTAACGGGGCTAGCGAGT- 8515
Query 186 CATCACCTTGGCCGGAAGGTCTGGGTAATCTTGTTAAACTCTGTCGTGCTGGGGATAGAG 245
| ||||| |||| |||||| |||||||||| | |||| | || | | ||||||||
Sbjct 8514 -ACTACCTTAGCCGAAAGGTCCGGGTAATCTTATAAAACCCCGTTATATTAAGGATAGAG 8456
Query 246 CATTGCAATTATTGCTCTTCAACGAGGAATGCCTAGTAAGCGCGTGTCATCAGCACGCGT 305
|||| ||||||| ||||| |||||||||| |||||||| || || || ||| |||
Sbjct 8455 CATTATAATTATTACTCTTTAACGAGGAATCCCTAGTAAACGTAAGTTATTAGCTTACGT 8396
Query 306 TGATTACGTCCCTGCCCTTTGTA 328
| ||||||||||| |||||| ||
Sbjct 8395 TAATTACGTCCCTACCCTTTATA 8373
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 946836445696
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |