Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Verticillium_20longisporum_20[genbank_20GCA_5F001268165.1_202015-08-
07] 38,382 sequences; 100,520,033 total letters
Query= AAMG01002199.1
Length=543
Score E
Sequences producing significant alignments: (Bits) Value
seq9080 771 0.0
seq32871 170 6e-40
>seq9080
Length=8040
Score = 771 bits (854), Expect = 0.0
Identities = 494/537 (92%), Gaps = 5/537 (1%)
Strand=Plus/Minus
Query 7 CTTTTGCTCTACAGGAGATTTCTGTTCTCCATGAGTCCCCCTTAGGACACCTGCGTTATG 66
|||||| ||||| |||||||||||||||||||||| ||||||||||||||||||||||||
Sbjct 6971 CTTTTGTTCTACTGGAGATTTCTGTTCTCCATGAGCCCCCCTTAGGACACCTGCGTTATG 6912
Query 67 GTTTAACAGATGTGCCGCCCCAGCCAAACTCCCCACCTGACAATGTCATCAACCCGGATC 126
||||||||||||||||||||||||||||||||||||||||||||||| | |||||| ||
Sbjct 6911 GTTTAACAGATGTGCCGCCCCAGCCAAACTCCCCACCTGACAATGTCTCCGACCCGGGTC 6852
Query 127 GGCCCGCGAAGGACCTTAACGCCAGAAAATGGTCGGTGAAGACCAGTTCCGCTTCATTGA 186
|||||||||||||||||||| | |||| ||| || ||| |||| ||||| || |
Sbjct 6851 GGCCCGCGAAGGACCTTAACACTAGAAGTTGGACGT--AAGTCCAGCCCCGCTCCACCGG 6794
Query 187 TTAAGTaaaaaaaCGATAAGGGTAGTGGTATTTCACTTGCGCCGAAACGGCTCCCACTTA 246
||||||||||||| || | |||||||||||||||| |||||| | |||||||| ||
Sbjct 6793 ATAAGTAAAAAAACAATGGGAGTAGTGGTATTTCACTGGCGCCGGA---GCTCCCACCTA 6737
Query 247 TTCTACACCTCTCAAGTCATTTCACAAAGTCGGACTAGAGTCAAGCTCAACAGGGTCTTC 306
||||||||||| || ||| |||||||| ||| |||||||||||||||||||||||||||
Sbjct 6736 TTCTACACCTCCCATGTCTTTTCACAATGTCAAACTAGAGTCAAGCTCAACAGGGTCTTC 6677
Query 307 TTTCCCCGCTGATTCCGCCAAGCCCGTTCCCTTGGCTGTGGTTTCGCTAGATAGTAGATA 366
||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||
Sbjct 6676 TTTCCCCGCTGATTCTGCCAAGCCCGTTCCCTTGGCTGTGGTTTCGCTAGATAGTAGATA 6617
Query 367 GGGACAGTGGGAATCTCGTTAATCCATTCATGCGCGTCACTAATTAGATGACGAGGCATT 426
|||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||
Sbjct 6616 GGGACAGTGGGAATCTCGTTGATCCATTCATGCGCGTCACTAATTAGATGACGAGGCATT 6557
Query 427 TGGCTACCTTAAGAGAGTCATAGTTACTCCCGCCGTTTACCCGCGCTTGGTTGAATTTCT 486
||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||
Sbjct 6556 TGGCTACCTTAAGAGAGTCATAGTTACTCCCGCCGTTTACCCGCGCTTGGTTGAATTACT 6497
Query 487 TCACTTTGACATTCAGAGCACTGGGCAGAAATCACATTGCGTCAACATCACTTTCTG 543
||||||||||||||||||||||||||||||||||||||||||||||| |||||||||
Sbjct 6496 TCACTTTGACATTCAGAGCACTGGGCAGAAATCACATTGCGTCAACACCACTTTCTG 6440
>seq32871
Length=1396
Score = 170 bits (188), Expect = 6e-40
Identities = 202/274 (74%), Gaps = 0/274 (0%)
Strand=Plus/Plus
Query 269 CACAAAGTCGGACTAGAGTCAAGCTCAACAGGGTCTTCTTTCCCCGCTGATTCCGCCAAG 328
||||| ||| ||||||||||||||||||||||||||||||||||||| |||| | |||
Sbjct 1 CACAATGTCAAACTAGAGTCAAGCTCAACAGGGTCTTCTTTCCCCGCTAATTCTACTAAG 60
Query 329 CCCGTTCCCTTGGCTGTGGTTTCGCTAGATAGTAGATAGGGACAGTGGGAATCTCGTTAA 388
|| ||||||| | | ||||||||||||| |||||||||| | | ||||||| ||||
Sbjct 61 CCTATTCCCTTAATTATAGTTTCGCTAGATAATAGATAGGGATAATAGGAATCTTATTAA 120
Query 389 TCCATTCATGCGCGTCACTAATTAGATGACGAGGCATTTGGCTACCTTAAGAGAGTCATA 448
|| ||| || | | ||||||||| | | | |||| |||| |||||||||| |||
Sbjct 121 TCTATTTATATATATTATTAATTAGATAATAAAGTATTTAGCTATTTTAAGAGAGTTATA 180
Query 449 GTTACTCCCGCCGTTTACCCGCGCTTGGTTGAATTTCTTCACTTTGACATTCAGAGCACT 508
||||| ||||| ||| || |||| ||| ||||| | ||| |||| |||
Sbjct 181 ATTACTTTTATTATTTACTTATACTTAATTAAATTACTTTACTTTAATATTTAGAGTACT 240
Query 509 GGGCAGAAATCACATTGCGTCAACATCACTTTCT 542
|||||| | ||| | || || |||||||
Sbjct 241 AAATAGAAATTATATTATATTAATATTACTTTCT 274
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 1634572377536
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |