Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Verticillium_20longisporum_20[genbank_20GCA_5F001268165.1_202015-08- 07] 38,382 sequences; 100,520,033 total letters Query= AAMG01002199.1 Length=543 Score E Sequences producing significant alignments: (Bits) Value seq9080 771 0.0 seq32871 170 6e-40 >seq9080 Length=8040 Score = 771 bits (854), Expect = 0.0 Identities = 494/537 (92%), Gaps = 5/537 (1%) Strand=Plus/Minus Query 7 CTTTTGCTCTACAGGAGATTTCTGTTCTCCATGAGTCCCCCTTAGGACACCTGCGTTATG 66 |||||| ||||| |||||||||||||||||||||| |||||||||||||||||||||||| Sbjct 6971 CTTTTGTTCTACTGGAGATTTCTGTTCTCCATGAGCCCCCCTTAGGACACCTGCGTTATG 6912 Query 67 GTTTAACAGATGTGCCGCCCCAGCCAAACTCCCCACCTGACAATGTCATCAACCCGGATC 126 ||||||||||||||||||||||||||||||||||||||||||||||| | |||||| || Sbjct 6911 GTTTAACAGATGTGCCGCCCCAGCCAAACTCCCCACCTGACAATGTCTCCGACCCGGGTC 6852 Query 127 GGCCCGCGAAGGACCTTAACGCCAGAAAATGGTCGGTGAAGACCAGTTCCGCTTCATTGA 186 |||||||||||||||||||| | |||| ||| || ||| |||| ||||| || | Sbjct 6851 GGCCCGCGAAGGACCTTAACACTAGAAGTTGGACGT--AAGTCCAGCCCCGCTCCACCGG 6794 Query 187 TTAAGTaaaaaaaCGATAAGGGTAGTGGTATTTCACTTGCGCCGAAACGGCTCCCACTTA 246 ||||||||||||| || | |||||||||||||||| |||||| | |||||||| || Sbjct 6793 ATAAGTAAAAAAACAATGGGAGTAGTGGTATTTCACTGGCGCCGGA---GCTCCCACCTA 6737 Query 247 TTCTACACCTCTCAAGTCATTTCACAAAGTCGGACTAGAGTCAAGCTCAACAGGGTCTTC 306 ||||||||||| || ||| |||||||| ||| ||||||||||||||||||||||||||| Sbjct 6736 TTCTACACCTCCCATGTCTTTTCACAATGTCAAACTAGAGTCAAGCTCAACAGGGTCTTC 6677 Query 307 TTTCCCCGCTGATTCCGCCAAGCCCGTTCCCTTGGCTGTGGTTTCGCTAGATAGTAGATA 366 ||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||| Sbjct 6676 TTTCCCCGCTGATTCTGCCAAGCCCGTTCCCTTGGCTGTGGTTTCGCTAGATAGTAGATA 6617 Query 367 GGGACAGTGGGAATCTCGTTAATCCATTCATGCGCGTCACTAATTAGATGACGAGGCATT 426 |||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||| Sbjct 6616 GGGACAGTGGGAATCTCGTTGATCCATTCATGCGCGTCACTAATTAGATGACGAGGCATT 6557 Query 427 TGGCTACCTTAAGAGAGTCATAGTTACTCCCGCCGTTTACCCGCGCTTGGTTGAATTTCT 486 ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| || Sbjct 6556 TGGCTACCTTAAGAGAGTCATAGTTACTCCCGCCGTTTACCCGCGCTTGGTTGAATTACT 6497 Query 487 TCACTTTGACATTCAGAGCACTGGGCAGAAATCACATTGCGTCAACATCACTTTCTG 543 ||||||||||||||||||||||||||||||||||||||||||||||| ||||||||| Sbjct 6496 TCACTTTGACATTCAGAGCACTGGGCAGAAATCACATTGCGTCAACACCACTTTCTG 6440 >seq32871 Length=1396 Score = 170 bits (188), Expect = 6e-40 Identities = 202/274 (74%), Gaps = 0/274 (0%) Strand=Plus/Plus Query 269 CACAAAGTCGGACTAGAGTCAAGCTCAACAGGGTCTTCTTTCCCCGCTGATTCCGCCAAG 328 ||||| ||| ||||||||||||||||||||||||||||||||||||| |||| | ||| Sbjct 1 CACAATGTCAAACTAGAGTCAAGCTCAACAGGGTCTTCTTTCCCCGCTAATTCTACTAAG 60 Query 329 CCCGTTCCCTTGGCTGTGGTTTCGCTAGATAGTAGATAGGGACAGTGGGAATCTCGTTAA 388 || ||||||| | | ||||||||||||| |||||||||| | | ||||||| |||| Sbjct 61 CCTATTCCCTTAATTATAGTTTCGCTAGATAATAGATAGGGATAATAGGAATCTTATTAA 120 Query 389 TCCATTCATGCGCGTCACTAATTAGATGACGAGGCATTTGGCTACCTTAAGAGAGTCATA 448 || ||| || | | ||||||||| | | | |||| |||| |||||||||| ||| Sbjct 121 TCTATTTATATATATTATTAATTAGATAATAAAGTATTTAGCTATTTTAAGAGAGTTATA 180 Query 449 GTTACTCCCGCCGTTTACCCGCGCTTGGTTGAATTTCTTCACTTTGACATTCAGAGCACT 508 ||||| ||||| ||| || |||| ||| ||||| | ||| |||| ||| Sbjct 181 ATTACTTTTATTATTTACTTATACTTAATTAAATTACTTTACTTTAATATTTAGAGTACT 240 Query 509 GGGCAGAAATCACATTGCGTCAACATCACTTTCT 542 |||||| | ||| | || || ||||||| Sbjct 241 AAATAGAAATTATATTATATTAATATTACTTTCT 274 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1634572377536