Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Verticillium_20longisporum_20[genbank_20GCA_5F001268165.1_202015-08-
07] 38,382 sequences; 100,520,033 total letters
Query= AAMG01002236.1
Length=287
Score E
Sequences producing significant alignments: (Bits) Value
seq9080 197 2e-48
>seq9080
Length=8040
Score = 197 bits (218), Expect = 2e-48
Identities = 218/280 (78%), Gaps = 8/280 (3%)
Strand=Plus/Plus
Query 1 GTACGAGAGGAACCGCGGAATTCAGAATAATTGGTTTTTGCGGCTGTCTGACCAGGCAGT 60
|||||||||||||||| | |||||| ||||||||||||||||||||| |||| ||||||
Sbjct 7294 GTACGAGAGGAACCGCTCA-TTCAGA-TAATTGGTTTTTGCGGCTGTCCGACCGGGCAGT 7351
Query 61 GCCGCGAAGCTACCATCTGCTGGATTATGGCTGAACGCCTCTAAGTCAGAATCCATGCCA 120
|||||||||||||||||||| |||| |||||||||||||||||||||||||||| |||||
Sbjct 7352 GCCGCGAAGCTACCATCTGCCGGATAATGGCTGAACGCCTCTAAGTCAGAATCCGTGCCA 7411
Query 121 GAACGGGGTGATTCTCTCCTGCACATCGTAGTCGGATACGAATAGG-CTTCGGCCCCGAA 179
||| | | || | |||| |||| | ||| ||| ||||||||| ||| ||| |
Sbjct 7412 GAAAGCGACGACGC-CTCCCGCACGT-ATAGATGGACACGAATAGGCCTTTGGCTTAGCG 7469
Query 180 CCTTAGCAGGCCGGCAACGGGCGTCCCGC-GGAAGCGCGGGGCGCTCAGCTGGCGGATTG 238
|||||||||| ||| | | | | | |||| || | | | | | | ||| ||||
Sbjct 7470 TCTTAGCAGGCAAAGAAC-GCCAACGCTCTGGAAACGGGTGTTGGT-ACTTTGCGAATTG 7527
Query 239 CAATTTCACCATGCGCAGGGATAAATCCTTTGCAGACGAC 278
||||||| || | || ||| ||||| |||||||||||
Sbjct 7528 TAATTTCAGCACGAGCGGGGTCGAATCCCTTGCAGACGAC 7567
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 818895400448
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |