Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Verticillium_20longisporum_20[genbank_20GCA_5F001268165.1_202015-08- 07] 38,382 sequences; 100,520,033 total letters Query= AAMG01002244.1 Length=504 Score E Sequences producing significant alignments: (Bits) Value seq9080 719 0.0 seq38272 439 7e-121 >seq9080 Length=8040 Score = 719 bits (796), Expect = 0.0 Identities = 464/505 (92%), Gaps = 2/505 (0%) Strand=Plus/Minus Query 1 GTACTCATTCCAATTACAAGACCCAAAAGAGCCCTGTATCAGTATTTATTGTCACTACCT 60 |||||||||||||||||| ||||||||||||||||||||| |||||||| |||||||||| Sbjct 1731 GTACTCATTCCAATTACAGGACCCAAAAGAGCCCTGTATCGGTATTTATCGTCACTACCT 1672 Query 61 CCCCGTGTCGGGATTGGGTAATTTGCGCGCCTGCTGCCTTCCTTGGATGTGGTAGCCGTT 120 ||||| |||||||||||||||||||||||||||||||||||||||||||| ||||||||| Sbjct 1671 CCCCGAGTCGGGATTGGGTAATTTGCGCGCCTGCTGCCTTCCTTGGATGTAGTAGCCGTT 1612 Query 121 TCTCAGGCTCCCTCTCCGGAATCGAACCCTAATTCCCCGTTACCCGTTGATACCATGGTA 180 ||||||||||| ||||||| |||| |||||| | |||| |||||||| |||||| || Sbjct 1611 TCTCAGGCTCCTTCTCCGGGGTCGAGCCCTAACCCTCCGTCACCCGTTGCAACCATGCTA 1552 Query 181 GGCCACTATCCTACCATCGAAAGTTGATAGGGCAGAAATTTGAATGAACCATCGCCGGCT 240 || || || | || |||||||||||||||||| |||||||||||||||||||||||||| Sbjct 1551 GGACAATACCGTAGCATCGAAAGTTGATAGGGAAGAAATTTGAATGAACCATCGCCGGCG 1492 Query 241 CAAGGCCATGCGATTCGTTAAGTTATTATGAATCACCAAG-GAGCCCCGAAGGGCGTTGG 299 | |||| ||||||||| ||||||| ||||||||||||| |||||||||||||| |||| Sbjct 1491 CGGGGCCGTGCGATTCGAGAAGTTATCATGAATCACCAAGAGAGCCCCGAAGGGCATTGG 1432 Query 300 TTTTTTATCTAATAAATACACCCCTTCCGAAGTCGGGGTTTTTAGCATGTATTAGCTCTA 359 |||| ||||||||||||||| |||||||||||||||| |||| ||||||||||||||||| Sbjct 1431 TTTTGTATCTAATAAATACATCCCTTCCGAAGTCGGGATTTTCAGCATGTATTAGCTCTA 1372 Query 360 GAATTACCACGGTTATCCATGTAGTAAGGTACTATCAAATAAACGATAACTGATTTAATG 419 ||||||||||||||||||||||||||||||||||||||||||||||||||| || ||||| Sbjct 1371 GAATTACCACGGTTATCCATGTAGTAAGGTACTATCAAATAAACGATAACTTATATAATG 1312 Query 420 AGCCATTCGCAGTTTCACTGTATAGATTGCTTATACTTAGACATGCATGGCTTAATCTTT 479 |||||||||||||||| || | || ||||||||||||||||||||||||||||||||||| Sbjct 1311 AGCCATTCGCAGTTTCGCTTTGTA-ATTGCTTATACTTAGACATGCATGGCTTAATCTTT 1253 Query 480 GAGACAAGCATATGACTACTGGCAG 504 ||||||||||||||||||||||||| Sbjct 1252 GAGACAAGCATATGACTACTGGCAG 1228 >seq38272 Length=182251 Score = 439 bits (486), Expect = 7e-121 Identities = 394/492 (80%), Gaps = 2/492 (0%) Strand=Plus/Plus Query 7 ATTCCAATTACAAGACCCAAAAGAGCCCTGTATCAGTATTTATTGTCACTACCTCCCCGT 66 |||| ||||| | |||| ||||||||||| |||| |||||||| || |||||||||||| Sbjct 9492 ATTCTAATTATAGGACCTAAAAGAGCCCTATATCGGTATTTATCGTTACTACCTCCCCGA 9551 Query 67 GTCGGGATTGGGTAATTTGCGCGCCTGCTGCCTTCCTTGGATGTGGTAGCCGTTTCTCAG 126 ||||||||| |||||||||||||||| | |||||||| ||| | |||||||||||| || Sbjct 9552 GTCGGGATTAGGTAATTTGCGCGCCTATTACCTTCCTTAGATATAGTAGCCGTTTCTTAG 9611 Query 127 GCTCCCTCTCCGGAATCGAACCCTAATTCCCCGTTACCCGTTGATACCATGGTAGGCCAC 186 ||||| ||||| |||| |||||| | |||||||||||| || || |||| | Sbjct 9612 GCTCCTTCTCCAAGGTCGAGCCCTAACCCTCCGTTACCCGTTATAACTATACTAGGATAA 9671 Query 187 TATCCTACCATCGAAAGTTGATAGGGCAGAAATTTGAATGAACCATCGCCGGCTCAAGGC 246 || | || |||||||||| |||||| |||||||| ||| ||| || || | ||| Sbjct 9672 TACCGTAATATCGAAAGTTAATAGGGAAGAAATTTAAATAAACTATTATTAGCGCGGGGC 9731 Query 247 CATGCGATTCGTTAAGTTATTATGAATCACCAAG-GAGCCCCGAAGGGCGTTGGTTTTTT 305 || ||||| |||||||||| ||| || ||| ||||||||||||| || ||||| | Sbjct 9732 TATACGATTTAAGAAGTTATTATAAATTACTAAGAGAGCCCCGAAGGGTATTAGTTTTAT 9791 Query 306 ATCTAATAAATACACCCCTTCCGAAGTCGGGGTTTTTAGCATGTATTAGCTCTAGAATTA 365 || ||||||||| | || ||||||| ||||| ||||||| || ||||||||||||||||| Sbjct 9792 ATTTAATAAATATATCCTTTCCGAAATCGGGATTTTTAGTATATATTAGCTCTAGAATTA 9851 Query 366 CCACGGTTATCCATGTAGTAAGGTACTATCAAATAAACGATAACTGATTTAATGAGCCAT 425 | ||||||||| || || ||||||| ||| ||||||||||||| | || |||| ||| || Sbjct 9852 CTACGGTTATCTATATAATAAGGTATTATTAAATAAACGATAATTTATATAATAAGCTAT 9911 Query 426 TCGCAGTTTCACTGTATAGATTGCTTATACTTAGACATGCATGGCTTAATCTTTGAGACA 485 ||| |||||| || |||| ||| |||||||||||| || || ||||||||||| ||| | Sbjct 9912 TCGTAGTTTCGCTTTATA-ATTACTTATACTTAGATATATATAGCTTAATCTTTAAGATA 9970 Query 486 AGCATATGACTA 497 || |||| |||| Sbjct 9971 AGTATATAACTA 9982 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1509820278272