Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Zymoseptoria_20ardabiliae_20[genbank_20GCA_5F000983525.1_202015-04- 30] 3,673 sequences; 34,411,184 total letters Query= NC_032108.1 Length=589068 Score E Sequences producing significant alignments: (Bits) Value seq1275 91.5 6e-13 seq3464 87.8 7e-12 >seq1275 Length=166772 Score = 91.5 bits (100), Expect = 6e-13 Identities = 137/192 (71%), Gaps = 2/192 (1%) Strand=Plus/Plus Query 364379 CCTCGCAAGGCTCCCACCTTGGAGGCTACAATCTCCATGAGCTTACCAATAGTCATACGA 364438 ||| | | ||| || ||||||||| | | ||| || | | | | || |||||||| Sbjct 20262 CCTTGGAGGGCGCCGACCTTGGAGAGGAGACACTCGATCAAATGAGCGATTGTCATACGG 20321 Query 364439 GAGGGAATGGAGAGAGGGTTGATGATGATGTCAGGCACCATGCCGTCAGCGGTAAAGGGC 364498 |||||||||| | ||||||||||||| ||||| || | || || |||| || ||| Sbjct 20322 GAGGGAATGGCGTGAGGGTTGATGATAATGTCGGGTGTGAGACCATCGGCGGAGAAAGGC 20381 Query 364499 ATATCTTC-GGGAGGAACGATGAGACCAATGGTTCCCTTTTGCGCATAGCGAGAAGCAAA 364557 || ||||| || || | | ||| || ||||| |||||||| | | ||||| || || Sbjct 20382 ATGTCTTCTTGGCGGTA-GGTGATGCCGATGGTACCCTTTTGTCCGTGACGAGAGGCGAA 20440 Query 364558 CTTGTCGCCAAT 364569 |||||| || || Sbjct 20441 CTTGTCTCCGAT 20452 >seq3464 Length=60611 Score = 87.8 bits (96), Expect = 7e-12 Identities = 174/256 (68%), Gaps = 4/256 (2%) Strand=Plus/Minus Query 12734 ACATCGTAAAAGAAAACTTTCATGCCTAGACACTCTGCTAGGACAGAGACCTGAGAACCA 12793 |||||||| ||| || |||||||| | |||| || ||||| || | ||| | ||| Sbjct 44184 ACATCGTAGTAGATGACCTTCATGCCCATCGACTCCGCCAGGACGGAAAGCTGTGCTCCA 44125 Query 12794 ATGTTACCATAACCTACTATACCTAGGGTCTTTCCTCTAACTTCACGGCAACC--TTGAG 12851 | || || || || | || || || ||||||||||| ||||| | ||| || |||| Sbjct 44124 ACGTGTCCGTATCCGATGATTCCCAGTGTCTTTCCTCTTACTTCCCAGCATCCAGCTGAG 44065 Query 12852 AAGTCTTGTTCCAAATGCCTTGGTGTAGTTCTTTGTTTCTATCTCCAACCTGACGAGAAA 12911 | ||||||||| | ||||||||| | || ||| | | || |||| ||| || | | Sbjct 44064 A--CCTTGTTCCACACGCCTTGGTGCATCTCATTGCTGCGGTCACCAATCTGTCGTGCTA 44007 Query 12912 GATTAATTAGTTGTCCTATGATGAGCTCTGCCACGCTTCTAGTGTTGCAAAAGGGAGAAT 12971 | || | | ||| || ||||| || || ||| | | ||||| || || || | Sbjct 44006 GCGCGATGATCTCTCCAATCATGAGTTCGGCGACGGAGCGCGAGTTGCTGAATGGCGAGT 43947 Query 12972 TAAAGACTGCAATGCC 12987 | ||||| || || || Sbjct 43946 TGAAGACGGCGATACC 43931 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1884797696656989