Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Zymoseptoria_20brevis_20[genbank_20GCA_5F000983655.1_202015-04-30] 6,895 sequences; 36,104,098 total letters Query= NC_010671.1 Length=124279 Score E Sequences producing significant alignments: (Bits) Value seq3840 325 3e-84 seq1700 192 5e-44 >seq3840 Length=90666 Score = 325 bits (360), Expect = 3e-84 Identities = 646/950 (68%), Gaps = 20/950 (2%) Strand=Plus/Plus Query 66000 TGGGAAGGGCAAGAGATGCGAGGTTGCAGACAGCTATCTCGTCAGGAGCGGTATACTCGA 66059 |||| ||||| |||||||| |||||||| || || | |||||||||||| || ||||||| Sbjct 34800 TGGGCAGGGCGAGAGATGCAAGGTTGCACACGGCGACCTCGTCAGGAGCAGTGTACTCGA 34859 Query 66060 CAATTTCGGTGCACAGATTACTGCAGCGTATGGTGCCCAAATTCTGTTGATTACTCTTGC 66119 ||| |||||||| ||||| || ||| ||||| ||||| |||| || || ||||||| Sbjct 34860 TAATCTCGGTGCAGAGATTGGAGCTGCGGATGGTTCCCAAGTTCTTCTGGTTGCTCTTGC 34919 Query 66120 GATTGCATGCATCCTTGTACATCATGTACGGAGTGCCGGTCTCAACTTGGGACTCAATGA 66179 ||| || |||||||| | ||||| || || |||||||| ||| | ||| | || Sbjct 34920 TGTTGGCAGCGTCCTTGTAGAGGATGTATGGGGTACCGGTCTCGGTTTGAGCCTCGAGGA 34979 Query 66180 TGGCGTGCCAAAG------AGCGCGTGCCTTCACCGTACGTACCGCCCTACCTTTGCGTT 66233 |||| | ||| || |||||| | || | ||| ||| | | || | || | Sbjct 34980 TGGCATACCAGAGCTTCTGAGCGCGGACGGTCTC---ACG-ACC--CTTGCCCTCACGCT 35033 Query 66234 CGTAATGTTCGTAGAGGTGTTCGAAGGATTCACCCCATACTTCGGACAGACATGGACACT 66293 |||| | ||||| || | ||||| | || | || || | ||||| || |||| Sbjct 35034 CGTATCGCTCGTACAGCTCCTCGAACTCAGCGCCGTAGACATCAGCCAGACCGGGGCACT 35093 Query 66294 TGTGTGGACACATCAGCGACCAATCACCATCCTGTTCTACACGACGCATAAATAGATCAG 66353 ||| || ||||||| | ||| || || || ||||| ||| || ||||| | Sbjct 35094 CGTGAGGGCACATCAAAGTCCAGGTGGTATTTTGCTCAACACGCTTCATGAAGAGATCTG 35153 Query 66354 GTATCCAGAGGGCGTAGAAGAGATCGCGTGCTCGTTGCTCCTCAATGCCGTGATTTTTGC 66413 | | ||| || ||||||| |||||||| || || |||||| | ||||| || |||| Sbjct 35154 GGACCCACAGACCGTAGAACAGATCGCGAGCACGAACCTCCTCCTTTCCGTGGTTCTTGC 35213 Query 66414 GCAAGTCGAGGAACTCAAAGATGTCGGCATGCCATGGTTCCAGGTAGATGGCGAACGAGC 66473 | | || | ||| |||| || || |||||||| || | ||| ||||| || | | Sbjct 35214 GGAGATCCAAGAAGGAGAAGACATCTGCGTGCCATGGCTCGATGTACATGGCAAAAGCAC 35273 Query 66474 CCATACGTTTGCCGCCACCTTGGTCGACGTAGCGAGCGACATTGTTGAAGACACGCAACA 66533 | || ||| ||| || |||||||||||||||||| ||||| || ||||||| || Sbjct 35274 CAGGTCGCTTGTTGCCGCCCTGGTCGACGTAGCGAGCGGTGTTGTTAAACACACGCAGCA 35333 Query 66534 TCGGTACGAGCCCGTTAGATTTGCCATTGGTGCCGTCGATGGGGGATCCTCGTGCCCGTA 66593 | |||||||| ||||| ||| | || ||||||||| |||| | ||| ||| || | Sbjct 35334 TGGGTACGAGACCGTTGGATGTTCCGTTGGTGCCGCTGATGTATGCTCCGGTTGCGCGAA 35393 Query 66594 TATCGTGAACATTCAGACCAATACCACCGGCCGTCTTCGAGATGGCAGCACAATCGGCC- 66652 | ||| || || || ||||| || ||||| |||| ||||| || || || | Sbjct 35394 TTCTGTGGACGTTGAGCCCAATGCCTCCGGCGTTCTTGGAGATCATGGCGCA---GGTCT 35450 Query 66653 --ACTGTCCGGAATATGCCGTCAATGGAGTCACCCTTGATGGTCAGGAGGTAGCATGAAC 66710 | ||| | | || || |||||| |||| | || ||| | |||| |||| || Sbjct 35451 TTAATGTGTCGTAGATCCCATCAATGCTGTCATCTTTCATGTCGATGAGGAAGCAGGATG 35510 Query 66711 TAAGTTGGGGTTTGGGTGTGGCGGCCGAGAAGAGGGTGGGTGTAGCGTGCGTAAAGTAAT 66770 ||||| | |||||||| | || ||| || || || | || || || ||||| | Sbjct 35511 CCAGTTGAGCGTTGGGTGTTCCAGCGCTGAACAGCGTAGGCGACGCATGTGTGAAGTACT 35570 Query 66771 GGCGAGACATGTAATTGTACGTCTCGATGACAGCATCAATGTTTTCGCCATGAATCCCGA 66830 | |||||||| ||||| ||||| ||| | | || |||| ||||| || || |||| Sbjct 35571 TGTTCGACATGTAGTTGTAGGTCTCAATGGCGGACTCGATGTCCTCGCCGTGGATGCCGA 35630 Query 66831 -GTGCACATCGCATCAGGAGGTATTGAGGCCGTTCGACCAGCCGATCCTTGATATGCATT 66889 | |||| ||||| | | | ||| || | ||| | | | | ||||| || Sbjct 35631 CGGCCACA-CGCATGATCATCTGTTGTGGTCTCTCGGCAACCTTGCCGTTGATCCTCAAA 35689 Query 66890 AAGTAGGAGCGTTCCAGGGTCTTGATACCAAAGTACGAGTAATTGAAATC 66939 | ||| || | ||||| ||||||| |||||||| ||| ||||| || Sbjct 35690 AGGTATGACCTCTCCAGCGTCTTGAATCCAAAGTATTGGTAGTTGAAGTC 35739 Score = 109 bits (120), Expect = 4e-19 Identities = 315/472 (67%), Gaps = 16/472 (3%) Strand=Plus/Plus Query 65078 TCGACCGTGAACTGGATCGCATTAGCAGCCGCCTTGGTCCTAAGATAGTACATGCCGGTC 65137 ||||| |||||||| || | || |||||| |||| | ||| ||||||||||| ||| Sbjct 33896 TCGACGGTGAACTGAATGGGCGCAGACGCCGCCATGGTGCGAAGGTAGTACATGCCAGTC 33955 Query 65138 TTGAGGCC-AGCACGCCAAGCATAGAAATGCATCGATGATAATTTTGCATA-ATTCGGCT 65195 || ||||| ||| ||| | ||| ||||| | || | ||||||| | | |||| Sbjct 33956 TTCAGGCCGAGC-TTCCAGCCGGCGAAGTGCAT-GCTGGTGATTTTGCCCATGGTGGGCT 34013 Query 65196 CGGCCACATGCATATTCAACGACTGACTCTGATCGATGTAACGACCACGATCTGCAGCCA 65255 | || || || |||| |||| |||||||||| || |||||| || || | || Sbjct 34014 CCTTCATGTGGATGTTCAGGCTCTGAGACTGATCGATGAAAGCACCACGGTCAGCGGACA 34073 Query 65256 TGTCAATGATACGACGTCCCGAT-ATCTCCCAGACGGTCTTGTACAG-GCGACGTACCTC 65313 | | || ||| | || | | | ||||||||||||||||||||||| || | | || Sbjct 34074 TCTGAACGATGTGGCG-CTGGCTGATCTCCCAGACGGTCTTGTACAGAGCCTTG-AGGTC 34131 Query 65314 AATTGGAATCTCCTCAATGTCCTGGACTGAACCACGACGTGCAATAATGCGATTACGCAT 65373 | || || | |||| ||||| ||||||| | || || ||||| || ||| Sbjct 34132 ATCGGGGATGTTTGGAATGCGCTGGATGGAACCACCATCGGCGATGATGCGGTTCTTCAT 34191 Query 65374 CGACTCTGACCACAAACCCAAATCGA-TAAGATGTT---GAACCAAGTGACGATTGATGA 65429 |||||||| | || |||| ||| || ||||| | | |||| | Sbjct 34192 GTTGTCTGACCAGAGGCCACGCTCGACCAAGTCCTTCAGCAACCACG----GGTTGACAA 34247 Query 65430 CTTGGAACTCGCCGGACAGTACACGACGGACATAGATGTTGGACGTGATGGGTTCAAAGG 65489 | |||||||| || | || ||||||||| ||||||||| ||| || || || Sbjct 34248 CCTGGAACTCACCAGCGAGCACACGACGGGAGTAGATGTTGCTGGTGTATGGCTCGAAAC 34307 Query 65490 ATTCAGTGTTGCCTAGAATTTGGGCAGTAGATGCAGTTGGCATGGGAGCGAC 65541 | || || ||| | || || | || || |||||||||||||||||||| Sbjct 34308 ACTCGTTGAAGCCCATGATCTGCGAGGTGGACGCAGTTGGCATGGGAGCGAC 34359 >seq1700 Length=96718 Score = 192 bits (212), Expect = 5e-44 Identities = 380/551 (69%), Gaps = 21/551 (4%) Strand=Plus/Minus Query 61087 ATTTGGCGCATGTACAAAAAGGCGGAAGCTTCCTTCTGGACGGTGGAGGAGGTCGATTTG 61146 || |||| |||||||||||||| || || ||||||||||| | |||||| ||||| | Sbjct 70025 ATCTGGCAAATGTACAAAAAGGCCGAGGCCTCCTTCTGGACCGCCGAGGAGATCGATCTC 69966 Query 61147 TCCAAAGACATGAATGACTGGGA---GCGTTT-ATCGAGCGGTGAACAACATTTCATTAA 61202 ||||| || | | |||||| | |||| | | ||| || || | ||||| Sbjct 69965 TCCAAGGATCTTCACGACTGGAACAAGCGTCTCAACGA-CGACGAGCGCTTCTTCATCTC 69907 Query 61203 ACATGTGTTGGCGTTCTTTGCCGCTTCGGACGGTATCGTCAATGAGAATTTATTGGAACG 61262 || || |||| ||||| || |||||||| || |||||||| ||||| | | || || Sbjct 69906 CCACGTCCTGGCCTTCTTCGCTGCTTCGGATGGCATCGTCAACGAGAACCTCATCGAGCG 69847 Query 61263 TTTC-GCGCAGGAGGTGCAAGTGTCGGAGGCGCGTTGTTTCTACGGCTTCCAGATTGCCA 61321 ||| ||| || || ||||| | | ||||| || || ||||||||||||||||| | Sbjct 69846 CTTCAGCGGAGAAG-TGCAAATCCCCGAGGCCCGCTGCTTCTACGGCTTCCAGATCATGA 69788 Query 61322 TGGAGAATGTCCACTCGGAGATGTACAGTGTTCTCATCGATACGTACATCAGGGAGCGGG 61381 ||||||| ||||||| |||| ||| | |||||||| || |||||||| |||| Sbjct 69787 TGGAGAACATCCACTCCGAGACATACTCCCTCCTCATCGACACATACATCAGCGAGCCCA 69728 Query 61382 CGGAACGTGAACG--ATTGTTCAATGCCATCGAGACGATACCGGCGGTGAAGC----GGA 61435 | ||| | ||| | ||||| |||||||| | || || || | | || Sbjct 69727 AGCAAC--GCACGTACCTCTTCAACGCCATCGACAACATCCC----ATGCATCCGTAAGA 69674 Query 61436 AAGCGGATTGGGCCTTCAATTGGATCACC-AGTACAACGGCTACATTTGGTGAACGATTG 61494 | || || ||||| | |||||| || | | ||| | || |||| || | Sbjct 69673 AGGCTGACTGGGCGCTGCGGTGGATCTCCGACAAGAAC-TCCACCTTTGCCTGCCGTCTC 69615 Query 61495 CTGGCATTTGCGGTGGTCGAGGGTGTATTTTTCAGTGGATCGTTTGCCGCAATCTTTTGG 61554 | || ||||| | | |||||| | || ||| ||||| || || | ||||| ||| Sbjct 69614 ATCGCCTTTGCCGCCATTGAGGGTATCTTCTTCTCCGGATCTTTCGCATCGATCTTCTGG 69555 Query 61555 TTGAAGAAACGTGGACTTATGCCCGGTCTGACCTTCAGCAATGAGTTGATATCACGCGAC 61614 |||||||| ||||| || |||||||| || |||||| ||| ||| | || || || ||| Sbjct 69554 TTGAAGAAGCGTGGTCTCATGCCCGGCCTCACCTTCTCCAACGAGCTCATCTCCCGTGAC 69495 Query 61615 GAGGGCATGCA 61625 ||||||||||| Sbjct 69494 GAGGGCATGCA 69484 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 397534591242800