Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Zymoseptoria_20pseudotritici_20[genbank_20GCA_5F000983605.1_202015- 04-30] 3,380 sequences; 36,798,086 total letters Query= NC_010671.1 Length=124279 Score E Sequences producing significant alignments: (Bits) Value seq2546 329 3e-85 seq3272 179 3e-40 >seq2546 Length=134672 Score = 329 bits (364), Expect = 3e-85 Identities = 655/965 (68%), Gaps = 14/965 (1%) Strand=Plus/Plus Query 66000 TGGGAAGGGCAAGAGATGCGAGGTTGCAGACAGCTATCTCGTCAGGAGCGGTATACTCGA 66059 ||||||| || |||||||| |||||||| || || | ||| |||||||| || ||||||| Sbjct 39436 TGGGAAGAGCGAGAGATGCAAGGTTGCACACGGCGACCTCATCAGGAGCAGTGTACTCGA 39495 Query 66060 CAATTTCGGTGCACAGATTACTGCAGCGTATGGTGCCCAAATTCTGTTGATTACTCTTGC 66119 || |||||||| || || || ||| ||||| |||||||||| || || ||||||| Sbjct 39496 TGATCTCGGTGCAGAGGTTGGAGCTGCGGATGGTTCCCAAATTCTTCTGGTTGCTCTTGC 39555 Query 66120 GATTGCATGCATCCTTGTACATCATGTACGGAGTGCCGGTCTCAACTTGGGACTCAATGA 66179 ||| || |||||||| | || || || ||||||||||| ||| | ||| | || Sbjct 39556 CGTTGGCAGCGTCCTTGTAAAGGATATATGGCGTGCCGGTCTCGGTTTGAGCCTCGAGGA 39615 Query 66180 TGGCGTGCCAAAG------AGCGCGTGCCTTCACCGTACGTACCGCCCTACCTTTGCGTT 66233 |||| | ||| || |||||| | || | ||| ||| | | || | || | Sbjct 39616 TGGCATACCAGAGCTTCTGAGCGCGGACGGTCTC---ACG-ACC--CTTGCCCTCACGCT 39669 Query 66234 CGTAATGTTCGTAGAGGTGTTCGAAGGATTCACCCCATACTTCGGACAGACATGGACACT 66293 |||| | ||||| || | ||||| | || | || || | ||||| || |||| Sbjct 39670 CGTATCGCTCGTACAGCTCCTCGAACTCAGCGCCGTAGACATCAGCCAGACCGGGGCACT 39729 Query 66294 TGTGTGGACACATCAGCGACCAATCACCATCCTGTTCTACACGACGCATAAATAGATCAG 66353 ||| || ||||||| | ||| || || || ||||| ||| || ||||| | Sbjct 39730 CGTGAGGGCACATCAAAGTCCAGGTGGTATTTTGCTCAACACGCTTCATGAAGAGATCTG 39789 Query 66354 GTATCCAGAGGGCGTAGAAGAGATCGCGTGCTCGTTGCTCCTCAATGCCGTGATTTTTGC 66413 | | ||| || ||||||| |||||||| || || |||||| | ||||| || |||| Sbjct 39790 GGACCCACAGACCGTAGAACAGATCGCGAGCACGAACCTCCTCCTTTCCGTGGTTCTTGC 39849 Query 66414 GCAAGTCGAGGAACTCAAAGATGTCGGCATGCCATGGTTCCAGGTAGATGGCGAACGAGC 66473 | | || | ||| |||| || || |||||||| || | ||| ||||| || | || Sbjct 39850 GGAGATCCAAGAAGGAGAAGACATCTGCGTGCCATGGCTCGATGTACATGGCAAAGGCGC 39909 Query 66474 CCATACGTTTGCCGCCACCTTGGTCGACGTAGCGAGCGACATTGTTGAAGACACGCAACA 66533 | || || ||| || |||||||||||||||||| ||||| || ||||||| || Sbjct 39910 CAGGTCGCTTATTGCCGCCCTGGTCGACGTAGCGAGCGGTGTTGTTAAACACACGCAGCA 39969 Query 66534 TCGGTACGAGCCCGTTAGATTTGCCATTGGTGCCGTCGATGGGGGATCCTCGTGCCCGTA 66593 | |||||||| ||||| ||| | || ||||||||| |||| | ||| ||| || | Sbjct 39970 TGGGTACGAGACCGTTGGATGTTCCGTTGGTGCCGCTGATGTATGCTCCGGTTGCGCGAA 40029 Query 66594 TATCGTGAACATTCAGACCAATACCACCGGCCGTCTTCGAGATGGCAGCACAATCGGCCA 66653 | ||| || || || ||||| || ||||| |||| ||||| || || || Sbjct 40030 TTCTGTGGACGTTGAGCCCAATGCCTCCGGCGTTCTTAGAGATCATGGCGCAGGTCTTCA 40089 Query 66654 CTGTCCGGAATATGCCGTCAATGGAGTCACCCTTGATGGTCAGGAGGTAGCATGAACTAA 66713 ||| | | || || ||||| |||| |||| ||| | |||| |||| || | Sbjct 40090 GTGTGTCGTAGATCCCATCAATACTGTCATCCTTCATGTCGATGAGGAAGCAGGATGCCA 40149 Query 66714 GTTGGGGTTTGGGTGTGGCGGCCGAGAAGAGGGTGGGTGTAGCGTGCGTAAAGTAATGGC 66773 | || | |||||||| | || ||| || ||||| | || || || ||||| | | Sbjct 40150 GCTGAGCGTTGGGTGTTCCAGCACTGAACAGCGTGGGCGACGCATGTGTGAAGTACTTGT 40209 Query 66774 GAGACATGTAATTGTACGTCTCGATGACAGCATCAATGTTTTCGCCATGAATCCCGAGTG 66833 |||||||| ||||| ||||| ||| ||| ||||||| ||||| || || || | | Sbjct 40210 TCGACATGTAGTTGTAGGTCTCAATGGCAGACTCAATGTCCTCGCCGTGGATTCCCACAG 40269 Query 66834 -CACATCGCATCAGGAGGTATTGAGGCCGTTCGACCAGCCGATCCTTGATATGCATTAAG 66892 |||| ||||| | | | ||| || | |||| | | | | ||||| || | | Sbjct 40270 CCACA-CGCATGATCATCTGTTGTGGTCTTTCGGCAACCTTGCCATTGATCCTCAAAAGG 40328 Query 66893 TAGGAGCGTTCCAGGGTCTTGATACCAAAGTACGAGTAATTGAAATCGTTAGCATGCACG 66952 || || | ||||| ||||||| || ||||| ||| |||||||| | | |||| Sbjct 40329 TATGACCTCTCCAGCGTCTTGAACCCGAAGTATTGGTAGTTGAAATCACGGTCGTACACG 40388 Query 66953 ATGGC 66957 ||||| Sbjct 40389 ATGGC 40393 >seq3272 Length=75414 Score = 179 bits (198), Expect = 3e-40 Identities = 566/860 (66%), Gaps = 28/860 (3%) Strand=Plus/Minus Query 61087 ATTTGGCGCATGTACAAAAAGGCGGAAGCTTCCTTCTGGACGGTGGAGGAGGTCGATTTG 61146 || |||| |||||||| ||||| || || ||||| ||||| | |||||| ||||| | Sbjct 17031 ATCTGGCAAATGTACAAGAAGGCCGAGGCCTCCTTTTGGACTGCCGAGGAGATCGATCTC 16972 Query 61147 TCCAAAGACATGAATGACTGGGA---GCGTTT-ATCGAGCGGTGAACAACATTTCATTAA 61202 ||||| ||| | | |||||| | ||| | | ||| || || | ||||| Sbjct 16971 TCCAAGGACCTTCACGACTGGAACAAGCGCCTGAACGA-CGACGAGCGCTTCTTCATCTC 16913 Query 61203 ACATGTGTTGGCGTTCTTTGCCGCTTCGGACGGTATCGTCAATGAGAATTTATTGGAACG 61262 || || |||| ||||| || |||||||| || |||||||| ||||| | | || || Sbjct 16912 CCACGTCCTGGCCTTCTTCGCTGCTTCGGATGGCATCGTCAACGAGAACCTCATCGAGCG 16853 Query 61263 TTTC-GCGCAGGAGGTGCAAGTGTCGGAGGCGCGTTGTTTCTACGGCTTCCAGATTGCCA 61321 ||| ||| || || ||||| | | ||||| || || ||||||||||||||||| | Sbjct 16852 CTTCAGCGGAGAAG-TGCAAATCCCCGAGGCCCGCTGCTTCTACGGCTTCCAGATCATGA 16794 Query 61322 TGGAGAATGTCCACTCGGAGATGTACAGTGTTCTCATCGATACGTACATCAGGGAGCGGG 61381 ||||||| ||||||| |||| ||| | |||||||| || |||||||| |||| Sbjct 16793 TGGAGAACATCCACTCCGAGACATACTCCCTCCTCATCGACACATACATCAGCGAGCCCA 16734 Query 61382 CGGAACGTGAACG--ATTGTTCAATGCCATCGAGACGATACCGGCGGTGAAGC----GGA 61435 | ||| | ||| | ||||| |||||||| | || || || | | || Sbjct 16733 AGCAAC--GCACGTACCTCTTCAACGCCATCGACAACATCCC----ATGCATCCGTAAGA 16680 Query 61436 AAGCGGATTGGGC-CTTCAATTGGATCACC-AGTACAACGGCTACATTTGGTGAACGATT 61493 | || || ||||| || | | |||||| || | | ||| | || |||| || | Sbjct 16679 AGGCTGACTGGGCGCTGCGA-TGGATCTCCGACAAGAAC-TCCACCTTTGCCTGCCGTCT 16622 Query 61494 GCTGGCATTTGCGGTGGTCGAGGGTGTATTTTTCAGTGGATCGTTTGCCGCAATCTTTTG 61553 | || ||||| | |||| || | || ||| ||||| || || | ||||| || Sbjct 16621 CATCGCCTTTGCCGCCATCGAAGGCATCTTCTTCTCCGGATCTTTCGCGTCGATCTTCTG 16562 Query 61554 GTTGAAGAAACGTGGACTTATGCCCGGTCTGACCTTCAGCAATGAGTTGATATCACGCGA 61613 ||||||||| ||||| || ||||| || || || ||| ||| ||| | || || || || Sbjct 16561 GTTGAAGAAGCGTGGTCTCATGCCTGGCCTCACTTTCTCCAACGAGCTCATTTCCCGTGA 16502 Query 61614 CGAGGGCATGCATTGTGATTTTGCTGTTTTGCTATTCAAACGCTATCTGGTGAATCGTCC 61673 ||||||||||| || ||||| |||| ||| | |||| || || Sbjct 16501 TGAGGGCATGCACACCGACTTTGCCTGCCTGCTGTTCTCTC---ATCTCAACAACAAGCC 16445 Query 61674 GTCGGAGGAGCGTGTGGGTGAGATTGTTCGTGAGGCGGTAACTATCGAACAGGAATTTCT 61733 || | | || | || || | ||||| || ||||| ||||| || || Sbjct 16444 ATCAAACCAAGTGGTTGAAGACATCATCACCGAGGCTGTCGTCATCGAGCAGGAGTTCCT 16385 Query 61734 GACTGACGCTTTGCCCGTCT-CACTCATCGGCATGAATTGTGGACTAATGTCGCAGTATA 61792 || ||||| | ||| | | | ||| |||| ||||| || |||| || || | Sbjct 16384 CACAGACGCCCT-CCCATGTGCGCTCCTCGGAATGAACGCCAAGCTCATGTGCCAATACA 16326 Query 61793 TTGAATTTGTTGCCGACCGTCTGTTGGTCGATTTGGGTATGAAGCGGATCTATAATACGA 61852 | || || || ||||| ||||| | | | | || | || | ||| || | | Sbjct 16325 TCGAGTTCGTCGCCGATCGTCTCCTCCTGGCACTCGGCAACCAGAAGCACTACAACGCCA 16266 Query 61853 AAAACCCATTTGATTTCATGGACATGATTTCGCTGGATGGCAAGACGAATTTTTTCGAGA 61912 ||||| || ||||||||||| | || || || | ||||||||||| || ||||||| Sbjct 16265 CCAACCCCTTCGATTTCATGGAGAACATCTCTCTCGGAGGCAAGACGAACTTCTTCGAGA 16206 Query 61913 AACGTGTAGGCGACTATCAA 61932 | ||||| || ||||| ||| Sbjct 16205 AGCGTGTCGGTGACTACCAA 16186 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 397551622683200