Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Zymoseptoria_20pseudotritici_20[genbank_20GCA_5F000983605.1_202015-
04-30] 3,380 sequences; 36,798,086 total letters
Query= NC_010671.1
Length=124279
Score E
Sequences producing significant alignments: (Bits) Value
seq2546 329 3e-85
seq3272 179 3e-40
>seq2546
Length=134672
Score = 329 bits (364), Expect = 3e-85
Identities = 655/965 (68%), Gaps = 14/965 (1%)
Strand=Plus/Plus
Query 66000 TGGGAAGGGCAAGAGATGCGAGGTTGCAGACAGCTATCTCGTCAGGAGCGGTATACTCGA 66059
||||||| || |||||||| |||||||| || || | ||| |||||||| || |||||||
Sbjct 39436 TGGGAAGAGCGAGAGATGCAAGGTTGCACACGGCGACCTCATCAGGAGCAGTGTACTCGA 39495
Query 66060 CAATTTCGGTGCACAGATTACTGCAGCGTATGGTGCCCAAATTCTGTTGATTACTCTTGC 66119
|| |||||||| || || || ||| ||||| |||||||||| || || |||||||
Sbjct 39496 TGATCTCGGTGCAGAGGTTGGAGCTGCGGATGGTTCCCAAATTCTTCTGGTTGCTCTTGC 39555
Query 66120 GATTGCATGCATCCTTGTACATCATGTACGGAGTGCCGGTCTCAACTTGGGACTCAATGA 66179
||| || |||||||| | || || || ||||||||||| ||| | ||| | ||
Sbjct 39556 CGTTGGCAGCGTCCTTGTAAAGGATATATGGCGTGCCGGTCTCGGTTTGAGCCTCGAGGA 39615
Query 66180 TGGCGTGCCAAAG------AGCGCGTGCCTTCACCGTACGTACCGCCCTACCTTTGCGTT 66233
|||| | ||| || |||||| | || | ||| ||| | | || | || |
Sbjct 39616 TGGCATACCAGAGCTTCTGAGCGCGGACGGTCTC---ACG-ACC--CTTGCCCTCACGCT 39669
Query 66234 CGTAATGTTCGTAGAGGTGTTCGAAGGATTCACCCCATACTTCGGACAGACATGGACACT 66293
|||| | ||||| || | ||||| | || | || || | ||||| || ||||
Sbjct 39670 CGTATCGCTCGTACAGCTCCTCGAACTCAGCGCCGTAGACATCAGCCAGACCGGGGCACT 39729
Query 66294 TGTGTGGACACATCAGCGACCAATCACCATCCTGTTCTACACGACGCATAAATAGATCAG 66353
||| || ||||||| | ||| || || || ||||| ||| || ||||| |
Sbjct 39730 CGTGAGGGCACATCAAAGTCCAGGTGGTATTTTGCTCAACACGCTTCATGAAGAGATCTG 39789
Query 66354 GTATCCAGAGGGCGTAGAAGAGATCGCGTGCTCGTTGCTCCTCAATGCCGTGATTTTTGC 66413
| | ||| || ||||||| |||||||| || || |||||| | ||||| || ||||
Sbjct 39790 GGACCCACAGACCGTAGAACAGATCGCGAGCACGAACCTCCTCCTTTCCGTGGTTCTTGC 39849
Query 66414 GCAAGTCGAGGAACTCAAAGATGTCGGCATGCCATGGTTCCAGGTAGATGGCGAACGAGC 66473
| | || | ||| |||| || || |||||||| || | ||| ||||| || | ||
Sbjct 39850 GGAGATCCAAGAAGGAGAAGACATCTGCGTGCCATGGCTCGATGTACATGGCAAAGGCGC 39909
Query 66474 CCATACGTTTGCCGCCACCTTGGTCGACGTAGCGAGCGACATTGTTGAAGACACGCAACA 66533
| || || ||| || |||||||||||||||||| ||||| || ||||||| ||
Sbjct 39910 CAGGTCGCTTATTGCCGCCCTGGTCGACGTAGCGAGCGGTGTTGTTAAACACACGCAGCA 39969
Query 66534 TCGGTACGAGCCCGTTAGATTTGCCATTGGTGCCGTCGATGGGGGATCCTCGTGCCCGTA 66593
| |||||||| ||||| ||| | || ||||||||| |||| | ||| ||| || |
Sbjct 39970 TGGGTACGAGACCGTTGGATGTTCCGTTGGTGCCGCTGATGTATGCTCCGGTTGCGCGAA 40029
Query 66594 TATCGTGAACATTCAGACCAATACCACCGGCCGTCTTCGAGATGGCAGCACAATCGGCCA 66653
| ||| || || || ||||| || ||||| |||| ||||| || || ||
Sbjct 40030 TTCTGTGGACGTTGAGCCCAATGCCTCCGGCGTTCTTAGAGATCATGGCGCAGGTCTTCA 40089
Query 66654 CTGTCCGGAATATGCCGTCAATGGAGTCACCCTTGATGGTCAGGAGGTAGCATGAACTAA 66713
||| | | || || ||||| |||| |||| ||| | |||| |||| || |
Sbjct 40090 GTGTGTCGTAGATCCCATCAATACTGTCATCCTTCATGTCGATGAGGAAGCAGGATGCCA 40149
Query 66714 GTTGGGGTTTGGGTGTGGCGGCCGAGAAGAGGGTGGGTGTAGCGTGCGTAAAGTAATGGC 66773
| || | |||||||| | || ||| || ||||| | || || || ||||| | |
Sbjct 40150 GCTGAGCGTTGGGTGTTCCAGCACTGAACAGCGTGGGCGACGCATGTGTGAAGTACTTGT 40209
Query 66774 GAGACATGTAATTGTACGTCTCGATGACAGCATCAATGTTTTCGCCATGAATCCCGAGTG 66833
|||||||| ||||| ||||| ||| ||| ||||||| ||||| || || || | |
Sbjct 40210 TCGACATGTAGTTGTAGGTCTCAATGGCAGACTCAATGTCCTCGCCGTGGATTCCCACAG 40269
Query 66834 -CACATCGCATCAGGAGGTATTGAGGCCGTTCGACCAGCCGATCCTTGATATGCATTAAG 66892
|||| ||||| | | | ||| || | |||| | | | | ||||| || | |
Sbjct 40270 CCACA-CGCATGATCATCTGTTGTGGTCTTTCGGCAACCTTGCCATTGATCCTCAAAAGG 40328
Query 66893 TAGGAGCGTTCCAGGGTCTTGATACCAAAGTACGAGTAATTGAAATCGTTAGCATGCACG 66952
|| || | ||||| ||||||| || ||||| ||| |||||||| | | ||||
Sbjct 40329 TATGACCTCTCCAGCGTCTTGAACCCGAAGTATTGGTAGTTGAAATCACGGTCGTACACG 40388
Query 66953 ATGGC 66957
|||||
Sbjct 40389 ATGGC 40393
>seq3272
Length=75414
Score = 179 bits (198), Expect = 3e-40
Identities = 566/860 (66%), Gaps = 28/860 (3%)
Strand=Plus/Minus
Query 61087 ATTTGGCGCATGTACAAAAAGGCGGAAGCTTCCTTCTGGACGGTGGAGGAGGTCGATTTG 61146
|| |||| |||||||| ||||| || || ||||| ||||| | |||||| ||||| |
Sbjct 17031 ATCTGGCAAATGTACAAGAAGGCCGAGGCCTCCTTTTGGACTGCCGAGGAGATCGATCTC 16972
Query 61147 TCCAAAGACATGAATGACTGGGA---GCGTTT-ATCGAGCGGTGAACAACATTTCATTAA 61202
||||| ||| | | |||||| | ||| | | ||| || || | |||||
Sbjct 16971 TCCAAGGACCTTCACGACTGGAACAAGCGCCTGAACGA-CGACGAGCGCTTCTTCATCTC 16913
Query 61203 ACATGTGTTGGCGTTCTTTGCCGCTTCGGACGGTATCGTCAATGAGAATTTATTGGAACG 61262
|| || |||| ||||| || |||||||| || |||||||| ||||| | | || ||
Sbjct 16912 CCACGTCCTGGCCTTCTTCGCTGCTTCGGATGGCATCGTCAACGAGAACCTCATCGAGCG 16853
Query 61263 TTTC-GCGCAGGAGGTGCAAGTGTCGGAGGCGCGTTGTTTCTACGGCTTCCAGATTGCCA 61321
||| ||| || || ||||| | | ||||| || || ||||||||||||||||| |
Sbjct 16852 CTTCAGCGGAGAAG-TGCAAATCCCCGAGGCCCGCTGCTTCTACGGCTTCCAGATCATGA 16794
Query 61322 TGGAGAATGTCCACTCGGAGATGTACAGTGTTCTCATCGATACGTACATCAGGGAGCGGG 61381
||||||| ||||||| |||| ||| | |||||||| || |||||||| ||||
Sbjct 16793 TGGAGAACATCCACTCCGAGACATACTCCCTCCTCATCGACACATACATCAGCGAGCCCA 16734
Query 61382 CGGAACGTGAACG--ATTGTTCAATGCCATCGAGACGATACCGGCGGTGAAGC----GGA 61435
| ||| | ||| | ||||| |||||||| | || || || | | ||
Sbjct 16733 AGCAAC--GCACGTACCTCTTCAACGCCATCGACAACATCCC----ATGCATCCGTAAGA 16680
Query 61436 AAGCGGATTGGGC-CTTCAATTGGATCACC-AGTACAACGGCTACATTTGGTGAACGATT 61493
| || || ||||| || | | |||||| || | | ||| | || |||| || |
Sbjct 16679 AGGCTGACTGGGCGCTGCGA-TGGATCTCCGACAAGAAC-TCCACCTTTGCCTGCCGTCT 16622
Query 61494 GCTGGCATTTGCGGTGGTCGAGGGTGTATTTTTCAGTGGATCGTTTGCCGCAATCTTTTG 61553
| || ||||| | |||| || | || ||| ||||| || || | ||||| ||
Sbjct 16621 CATCGCCTTTGCCGCCATCGAAGGCATCTTCTTCTCCGGATCTTTCGCGTCGATCTTCTG 16562
Query 61554 GTTGAAGAAACGTGGACTTATGCCCGGTCTGACCTTCAGCAATGAGTTGATATCACGCGA 61613
||||||||| ||||| || ||||| || || || ||| ||| ||| | || || || ||
Sbjct 16561 GTTGAAGAAGCGTGGTCTCATGCCTGGCCTCACTTTCTCCAACGAGCTCATTTCCCGTGA 16502
Query 61614 CGAGGGCATGCATTGTGATTTTGCTGTTTTGCTATTCAAACGCTATCTGGTGAATCGTCC 61673
||||||||||| || ||||| |||| ||| | |||| || ||
Sbjct 16501 TGAGGGCATGCACACCGACTTTGCCTGCCTGCTGTTCTCTC---ATCTCAACAACAAGCC 16445
Query 61674 GTCGGAGGAGCGTGTGGGTGAGATTGTTCGTGAGGCGGTAACTATCGAACAGGAATTTCT 61733
|| | | || | || || | ||||| || ||||| ||||| || ||
Sbjct 16444 ATCAAACCAAGTGGTTGAAGACATCATCACCGAGGCTGTCGTCATCGAGCAGGAGTTCCT 16385
Query 61734 GACTGACGCTTTGCCCGTCT-CACTCATCGGCATGAATTGTGGACTAATGTCGCAGTATA 61792
|| ||||| | ||| | | | ||| |||| ||||| || |||| || || |
Sbjct 16384 CACAGACGCCCT-CCCATGTGCGCTCCTCGGAATGAACGCCAAGCTCATGTGCCAATACA 16326
Query 61793 TTGAATTTGTTGCCGACCGTCTGTTGGTCGATTTGGGTATGAAGCGGATCTATAATACGA 61852
| || || || ||||| ||||| | | | | || | || | ||| || | |
Sbjct 16325 TCGAGTTCGTCGCCGATCGTCTCCTCCTGGCACTCGGCAACCAGAAGCACTACAACGCCA 16266
Query 61853 AAAACCCATTTGATTTCATGGACATGATTTCGCTGGATGGCAAGACGAATTTTTTCGAGA 61912
||||| || ||||||||||| | || || || | ||||||||||| || |||||||
Sbjct 16265 CCAACCCCTTCGATTTCATGGAGAACATCTCTCTCGGAGGCAAGACGAACTTCTTCGAGA 16206
Query 61913 AACGTGTAGGCGACTATCAA 61932
| ||||| || ||||| |||
Sbjct 16205 AGCGTGTCGGTGACTACCAA 16186
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 397551622683200
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |