Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Brettanomyces_20bruxellensis_20[genbank_20GCA_5F001719535.1_202016- 09-05] 978 sequences; 11,766,522 total letters Query= NC_010671.1 Length=124279 Score E Sequences producing significant alignments: (Bits) Value seq14 178 1e-39 seq290 147 2e-30 >seq14 Length=27313 Score = 178 bits (196), Expect = 1e-39 Identities = 836/1314 (64%), Gaps = 38/1314 (3%) Strand=Plus/Plus Query 65390 CCCAAATCGATAAGATGTTGAACCAAGTGACGATTGATGACTTGGAACTCGCCGGACAGT 65449 |||| ||| ||||| | | || || | |||||| | |||||||| || | || Sbjct 16671 CCCATATCAATAAGGTCCCTTAGCATGTAAGGATTGACAATCTGGAACTCACCAGCAAGA 16730 Query 65450 ACACGACGGACATAGATGTTGGACGTGATGGGTTCAAAGGATTCAGTGTTGCCTAGAATT 65509 || | | ||||||||| || |||| || |||||| | || ||| || | ||| Sbjct 16731 ACTCTTCTCTGATAGATGTTAGAGGTGAATGGCTCAAAGCACTCGTTGTAACCCATAATC 16790 Query 65510 TGGGCAGTAGATGCAGTTGGCATGGGAGCGACCAACAATGAGTTTCGCAATCCGTTCATT 65569 || | ||||| ||||||||||| ||||||||||| | || |||| | || | | | Sbjct 16791 TGAGAGGTAGAGGCAGTTGGCATAGGAGCGACCAAAAGCGAATTTCTAAGACCATCCTTA 16850 Query 65570 TCAATGTTGTGACGCAATTCGTCCCAGTTCCACATCGGTTTATCGTCGACATCCACGGGC 65629 | || ||| ||| ||||| | ||||| | | | || | | || | Sbjct 16851 GCGATCTTGGCCTTCAAAGTCTCCCAATCCCACA---GATCA--GTTGGCTTCTTATT-C 16904 Query 65630 CACATATCCTGTTGCAGGGTTCCGATACTGGCCGGTGAACCGAGGAAACTATCGTACACT 65689 |||||||| | || || | || | || || || || | | | |||||| Sbjct 16905 CACATATCGTACTGGAGAATACCCTTGGAAGCTGGAGAGCCTTCGTAGGTCTCGTACGTA 16964 Query 65690 CCCTCCTCCTTGGCAAGTTGACAGCTGGT--CTCGAGTGCGGCAAAATAAATGGTCTCGA 65747 ||||| ||| | ||| ||| || | ||| || || || || | |||||||| Sbjct 16965 CCCTCTTCCACAGAAAGCTGATT--TGATTCCTCCAGAGCACCATGGTACAAGGTCTCGA 17022 Query 65748 AAATGCGTCGATTAAGTTCACGTGCCTCATCGCTCTCGTACGGCATACCCATCAGGACAA 65807 | || || ||||| ||||| || || || || | |||| | | || || | Sbjct 17023 ATATCTGTATGTTAAGCTCACGAGCTTCTGGGCAGTCAAATGGCAATCTGAGCATGAAGA 17082 Query 65808 AAGTGTCGGCCAGACCTTGAACTCCAATACCGATGGGACGATGACGCAAATTGGAACGTC 65867 | || || || ||||||||||| |||| | |||| || | | | || ||||| | Sbjct 17083 ACGTATCCGCAAGACCTTGAACACCAAGAGCGATAGGTCTGTTTCTCATGTTGGAGTTGC 17142 Query 65868 TCGCCTCAGGTACAGGGTAGTAATTGATATCGATAATGCGATTCAAATTGCGTGTCACCA 65927 ||||| || || ||||||||||| | || || | || ||||| || ||||| || | Sbjct 17143 GGGCCTCTGGAACTGGGTAGTAATTCCTGTCAATGACACGGTTCAAGTTACGTGTGACAA 17202 Query 65928 CATGCACGATACGTCGCAATTGTTCGAAATCAAAATGTTTAGGACGATCGG-GAG---TG 65983 | | ||| |||| | || ||||| ||| | || | | | || || Sbjct 17203 CCTTGGTGATCTTGTGCAACT--TC----TCAAA--GTTGA--ACCAACAGTGATCCTTG 17252 Query 65984 CCGGACACCACAAACTTGGGAAGGGCAAGAGATGCGAGGTTGCAGACAGCTATCTCGTCA 66043 ||||| | ||||| || | | || ||| | ||| || ||| | | ||| || Sbjct 17253 TCGGACTCAACAAATGCAGGCAAGCAAATGTTTGCCAAGTTACACACACCGACCTCATCT 17312 Query 66044 GGAGCGGTATACTCGACAATTTCGGTGCACAGATTACTGCAGCGT--ATGGTGCCCAAAT 66101 |||| | |||||||||| || ||||| ||| | || | ||||| ||||| | Sbjct 17313 GGAGAAGAGTACTCGACAACCTCACAGCACAAATTC--GAAGACTTGATGGTTCCCAAGT 17370 Query 66102 TCTGTTGATTACTCTTGCGATTGCATGCATCCTTGTACATCATGTACGGAGTGCCGGTCT 66161 ||| |||||||||||| | ||||| ||||||||||| |||||| | || || ||||| | Sbjct 17371 TCTTTTGATTACTCTTTCTGTTGCAGGCATCCTTGTAAATCATGAAAGGCGTACCGGTTT 17430 Query 66162 CAACTTGGGACTCAATGATGGCGTGCCAAAGAGCGCGTGCCTTCACCGTACGT-----AC 66216 | || | ||| | || | ||| | | ||||| || || | | || Sbjct 17431 CTGTCTGAGCCTCCAAAATCTGATACCACAACTTCTGAGCCTTAACGGTTCTTCTTCCAC 17490 Query 66217 CGCCCTACCTTTGCGTTCGTAATGTTCGTAGAGGTGTTCGAAGGATTCACCCCATACTTC 66276 |||| |||| |||||| | ||| | | ||| || ||||| | || || Sbjct 17491 GTCCCT-CCTTC----TCGTAACGAGTGTACAACTTTTCAAACTCGTCACCATAAACATC 17545 Query 66277 GGACAGACATGGACACTTGTGTGGACACATCAGCGACCAATCACCATCCTGTTCTACACG 66336 || |||| ||| || ||| | | || | ||| | ||| ||||| ||||| Sbjct 17546 TGAAAGACCTGGGGCCTCAGAAGGAGAAAACAAAGTCCATGTATCATTTTGTTCAACACG 17605 Query 66337 ACGCATAAATAGATCAGGTATCCAGAGGGCGTAGAAGAGATCGCGTGCTCGTTGCTCCTC 66396 ||| ||||||||||| ||||| || || ||| | ||| ||||| || |||||| Sbjct 17606 CTTCATGAATAGATCAGGGATCCAAAGAGCTGGGAACAAATCACGTGCACGGATCTCCTC 17665 Query 66397 AATGCCGTGATTTTTGCGCAAGTCGAGGAACTCAAAGATGTCGGCATGCCATGGTTCCAG 66456 | |||||||| || | | |||| ||| |||||||| || |||||||| ||||| | Sbjct 17666 CTTACCGTGATTCTTCCTGATATCGATGAAGTCAAAGATATCTGCATGCCAAGGTTCTAA 17725 Query 66457 GTAGATGGCGAACGAGCCCATACGTTTGCCGCCACCTTGGTCGACGTAGCGAGCGACATT 66516 |||||| || | | || | ||| ||||||||||| || || | ||| | | Sbjct 17726 GTAGATAGCAATGGCACCTGGTCTCTTGTTACCACCTTGGTCAACATACCTAGCAGTACT 17785 Query 66517 GTTGAAGACACGCAACATCGGTACGAGCCCGTTAGATTTGCCATTGGTGCCGTCGATGGG 66576 |||||| ||||| | ||| || | | || || ||| | || ||||| || | ||| Sbjct 17786 GTTGAACACACGAACCATAGGAATAATACCATTGGATGTACCGTTGGTACCAGCAATGTA 17845 Query 66577 GGATCCTCGTGCCCGTATATCGTGAACATTCAGACCAATACCACCGGCCGTCTTCGAGAT 66636 || ||| | || || | |||| || |||||||||||||| |||||||| || || Sbjct 17846 TGAACCTGTAGAACGAATGTTATGAATATGTAGACCAATACCACCAGCCGTCTTGGAAAT 17905 Query 66637 GGCAGCACAATCGGCCACTGTCCGGAATATGCCGTCAATGGAGTCACCCTTGAT 66690 ||||| | || || | | || || ||||| |||||| |||| || Sbjct 17906 CAAGGCACACTGTTTCAAAGTGTCGTAGATACCTTCAATAGAGTCATCCTTCAT 17959 >seq290 Length=58723 Score = 147 bits (162), Expect = 2e-30 Identities = 384/582 (66%), Gaps = 13/582 (2%) Strand=Plus/Minus Query 61064 TGTTCCCCATCGAGTATGAGGATATTTGGCGCATGTACAAAAAGGCGGAAGCTTCCTTCT 61123 ||||||| || |||| || ||||| |||| ||||| || |||||||| || || || | Sbjct 53667 TGTTCCCTATTCAGTACGATGATATATGGCAAATGTATAAGAAGGCGGAGGCCTCTTTTT 53608 Query 61124 GGACGGTGGAGGAGGTCGATTTGTCCAAAGACATGAATGACTGGGAGCGTTTATCGAGCG 61183 |||| | |||||| | ||| | || || ||| ||| ||||||| | | | || Sbjct 53607 GGACTGCTGAGGAGATTGATCTCTCTAAGGACTTGACTGACTGGAAC-----AACAAGAT 53553 Query 61184 G--TG--AACAACATTT-CATTAAA---CATGTGTTGGCGTTCTTTGCCGCTTCGGACGG 61235 | || ||| | | | | ||| | | ||| ||||| || ||||||||||| || || Sbjct 53552 GAATGCCAACGAGAGATACTTTATATCGCGTGTTTTGGCATTTTTTGCCGCTTCTGATGG 53493 Query 61236 TATCGTCAATGAGAATTTATTGGAACGTTTCGCGCAGGAGGTGCAAGTGTCGGAGGCGCG 61295 ||| || | ||||| || || |||| | || |||| ||| | | || || | Sbjct 53492 TATTGTTGACGAGAACTTGGCACAAAATTTCATGAAGCAGGTTCAATTACCAGAAGCAAG 53433 Query 61296 TTGTTTCTACGGCTTCCAGATTGCCATGGAGAATGTCCACTCGGAGATGTACAGTGTTCT 61355 || ||||| ||||||||| | ||||| ||||||| |||| ||| || | Sbjct 53432 AGCCTTTTACGGTTTCCAGATTATGGTTGAGAACATCCACTCTGAGACCTACTCCCTTTT 53373 Query 61356 CATCGATACGTACATCAGGGAGCGGGCGGAACGTGAACGATTGTTCAATGCCATCGAGAC 61415 | || |||||||||| || | ||| || ||||||||||| ||| | || Sbjct 53372 ACTTGAAACGTACATCACCGACAAGAAGGAGTCCGACTACTTGTTCAATGCTATCCATAC 53313 Query 61416 GATACCGGCGGTGAAGCGGAAAGCGGATTGGGCCTTCAATTGGATCACCAGTACAACGGC 61475 || || | | ||| || || ||||| || | ||||| | || | || Sbjct 53312 CATTCCACCTATTAAGGAAAAGGCTCTATGGGCTTTGAGATGGATAAACAATGATGATGC 53253 Query 61476 TACATTTGGTGAACGATTGCTGGCATTTGCGGTGGTCGAGGGTGTATTTTTCAGTGGATC 61535 | | || ||| ||||| | || ||||| | |||||||||| || ||| ||| || Sbjct 53252 TTTGTATGCTGAGAGATTGGTCGCCTTTGCTGCCATCGAGGGTGTTTTCTTCTCTGGCTC 53193 Query 61536 GTTTGCCGCAATCTTTTGGTTGAAGAAACGTGGACTTATGCCCGGTCTGACCTTCAGCAA 61595 ||||||| | ||||| ||||||||||| | || | ||||| || || |||||| ||| Sbjct 53192 GTTTGCCTCTATCTTCTGGTTGAAGAAGAGAGGTTTGATGCCTGGACTTACCTTCTCCAA 53133 Query 61596 TGAGTTGATATCACGCGACGAGGGCATGCATTGTGATTTTGC 61637 |||| | || | | || ||||| | ||| |||||| || Sbjct 53132 TGAGCTTATTTGCAGGGATGAGGGTCTACATACTGATTTCGC 53091 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 397563261237920