Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Brettanomyces_20custersianus_20[genbank_20GCA_5F001746385.1_202016- 09-25] 179 sequences; 10,219,415 total letters Query= NC_010671.1 Length=124279 Score E Sequences producing significant alignments: (Bits) Value seq115 165 6e-36 >seq115 Length=359903 Score = 165 bits (182), Expect = 6e-36 Identities = 553/856 (65%), Gaps = 10/856 (1%) Strand=Plus/Minus Query 66089 ATGGTGCCCAAATTCTGTTGATTACTCTTGCGATTGCATGCATCCTTGTACATCATGTAC 66148 || || || | ||||| |||||||||||| | || || ||||| ||||| |||||| | Sbjct 5845 ATAGTACCGAGATTCTTTTGATTACTCTTTCTGTTACAAGCATCTTTGTAGATCATGAAT 5786 Query 66149 GGAGTGCCGGTCTCAACTTGGGACTCAATGATGGCGTGCCAAAGAGCGCGTGCCTTCACC 66208 ||||| || || ||| ||||| ||| | || | |||||| ||||||| || Sbjct 5785 GGAGTACCAGTTTCAGTTTGGGCCTCCAAAATCTGATACCAAAGCTTTTGTGCCTTGACA 5726 Query 66209 GTACGT--ACCGC--CCTACCTTTGCGTTCGTAATGTTCGTAGAGGTGTTCGAAGGATTC 66264 || | | ||| | ||| ||||| || || | ||| | | |||||| || Sbjct 5725 GTTCTTCTACCACGACCTTCCTTT----TCATATTTGGTGTACAATTTTTCGAACTCATC 5670 Query 66265 ACCCCATACTTCGGACAGACATGGACACTTGTGT-GGACACATCAGCGACCAATCACCAT 66323 ||| | || ||||| || | ||| ||| | || | | || | ||| ||||| Sbjct 5669 ACCGTAGACATCGGAAAGGCCAGGAG-CTTCAGAAGGTGAGAACAAAGTCCATGGACCAT 5611 Query 66324 CCTGTTCTACACGACGCATAAATAGATCAGGTATCCAGAGGGCGTAGAAGAGATCGCGTG 66383 | ||| ||||| ||| || |||||||| ||||| || || ||| | ||| || | Sbjct 5610 TTTCTTCCACACGCTTCATGAAAAGATCAGGAATCCAAAGAGCTGGGAACAAATCACGGG 5551 Query 66384 CTCGTTGCTCCTCAATGCCGTGATTTTTGCGCAAGTCGAGGAACTCAAAGATGTCGGCAT 66443 ||| ||| || | || || || | || | |||| ||| || ||||| || |||| Sbjct 5550 CTCTAATCTCTTCCTTACCATGGTTCATCCGGATATCGATGAAATCGAAGATATCTGCAT 5491 Query 66444 GCCATGGTTCCAGGTAGATGGCGAACGAGCCCATACGTTTGCCGCCACCTTGGTCGACGT 66503 |||| ||||||| |||| ||| | | || ||| ||| |||||||| ||||| | Sbjct 5490 GCCAAGGTTCCAAATAGACGGCAATGGCACCAGGACGCTTGTTACCACCTTGATCGACAT 5431 Query 66504 AGCGAGCGACATTGTTGAAGACACGCAACATCGGTACGAGCCCGTTAGATTTGCCATTGG 66563 | | || | ||||||||||||| | ||| || | || || ||||| | ||||||| Sbjct 5430 ATCTGGCAGTACTGTTGAAGACACGAATCATAGGAATGATACCATTAGAAGTACCATTGG 5371 Query 66564 TGCCGTCGATGGGGGATCCTCGTGCCCGTATATCGTGAACATTCAGACCAATACCACCGG 66623 | || | ||| || || || || || | || | || || ||| |||||||||| Sbjct 5370 TACCTGCAATGTATGAGCCAGTAGCACGAATGTTATGGATATGCATACCGATACCACCGG 5311 Query 66624 CCGTCTTCGAGATGGCAGCACAATCGGCCACTGTCCGGAATATGCCGTCAATGGAGTCAC 66683 | || || || || ||| || | || || | | || || || ||||||||| Sbjct 5310 CGGTTTTAGAAATTAAAGCGCACTGCTTCAAAGTATCGTAGATACCTTCGATGGAGTCAT 5251 Query 66684 CCTTGATGGTCAGGAGGTAGCATGAACTAAGTTGGGGTTTGGGTGTGGCGGCCGAGAAGA 66743 | || |||| | | | | |||||| | || ||| | || || | || ||| | Sbjct 5250 CTTTCATGGCAACCAAGAAACATGAAGACATCTGAGGTCTAGGAGTACCTGCATTGAACA 5191 Query 66744 GGGTGGGTGTAGCGTGCGTAAAGTAATGGCGAGACATGTAATTGTACGTCTCGATGACAG 66803 ||| |||| ||| ||||| |||||| | ||||||| ||||| | ||| | || Sbjct 5190 AGGTTGGTGAAGCATGCGTGAAGTAACGTTTAGACATGAGGTTGTAAGACTCAAGAACTT 5131 Query 66804 CATCAATGTTTTCGCCATGAATCCCGAGTGCACATCGCATCAGGAGGTATTGAGGCCGTT 66863 | ||| | ||||| || || | ||| |||||||| | | ||||| | | Sbjct 5130 TAGGAATATCACTACCATGGATACCAACGGCAACACGCATCAGTAAATGCTGAGGTCTCT 5071 Query 66864 CGACCAGCCGATCCTTGATATGCATTAAGTAGGAGCGTTCCAGGGTCTTGATACCAAAGT 66923 || | | | | ||||| | || || || ||||||| || |||| ||| || | Sbjct 5070 CGGCGACTTTACCGTTGATTCTAAGCAAATATGACCGTTCCAACGTTTTGAAACCGAAAT 5011 Query 66924 ACGAGTAATTGAAATC 66939 | ||| |||||||| Sbjct 5010 AATTGTAGTTGAAATC 4995 Score = 82.4 bits (90), Expect = 6e-11 Identities = 104/143 (73%), Gaps = 0/143 (0%) Strand=Plus/Minus Query 67061 GTCTGCTTGTGCATGTTGGAGATGGCGATACGGGCGGCCAGGACACCATAATCGGGATGT 67120 ||||||||||||| ||| ||||| || | ||| || |||| | |||| || ||||| Sbjct 4846 GTCTGCTTGTGCAAGTTCGAGATTGCCAAACGTGCAGCCAATGTAGCATAGTCAGGATGC 4787 Query 67121 AGAGTCATCATACTGGCGGCAGTTTCAGCGGCCAAGGTATCAAGTTCAGCGGTAGTCACA 67180 ||||| |||| || ||||| || || | ||| |||| | ||| |||| |||||| Sbjct 4786 AGAGTAGTCATGTAAGCTGCAGTCTCGGCAGTTAAGTTATCCAACTCAACGGTGGTCACA 4727 Query 67181 CCAGGATACAGGCCAGCAACGAC 67203 ||||| || | || | |||||| Sbjct 4726 CCAGGGTAAACACCTGTAACGAC 4704 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 397567132680560