Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Brettanomyces_20naardenensis_20[genbank_20GCA_5F001753995.1_202016-
10-07] 76 sequences; 11,283,072 total letters
Query= AAMG01002236.1
Length=287
Score E
Sequences producing significant alignments: (Bits) Value
seq52 165 1e-38
>seq52
Length=7685
Score = 165 bits (182), Expect = 1e-38
Identities = 221/294 (75%), Gaps = 20/294 (7%)
Strand=Plus/Plus
Query 1 GTACGAGAGGAACCGCGGAATTCAGAATAATTGGTTTTTGCGGCTGTCTGACCAGGCAGT 60
||||||||||||||| | |||||| | |||||| |||||||||| |||| ||| || |
Sbjct 5926 GTACGAGAGGAACCGTTCA-TTCAGA-TCATTGGTATTTGCGGCTGCCTGAACAGACATT 5983
Query 61 GCCGCGAAGCTACCATCTGCTGGATTATGGCTGAACGCCTCTAAGTCAGAATCCATGCCA 120
||||||||||| |||||| |||||||||||||||||||||||||||||||||||||| |
Sbjct 5984 ACCGCGAAGCTATCATCTGTTGGATTATGGCTGAACGCCTCTAAGTCAGAATCCATGCTA 6043
Query 121 GAACGGGGTGATTCTCT-----CCTGCACATCGTAGTCGGATACGAAT-AGGC---TTCG 171
||| ||| ||||| | | | ||| | ||| |||||||||| |||| || |
Sbjct 6044 GAAAGGGATGATTTTTTTATGCCTTGCTATTACTAGAAGGATACGAATAAGGCACATTAG 6103
Query 172 -GCCCC--GAACCTTAGCAGGCCGGCAACGGGCGTC-CCGCGGAA--GCGCGGGGCGCTC 225
| | | ||||| |||||||| ||| || || |||||| || ||| | ||
Sbjct 6104 TGTCGCTGGAACCATAGCAGGCTGGCGCTGGCACTCTTGGCGGAAAGGCCTTGGGTG-TC 6162
Query 226 AGCTGGCGGATTGCAATTTC-ACCATGCGCAGGGATAAATCCTTTGCAGACGAC 278
|| ||||||| ||||| || | ||| || ||| | |||||||||| |||||
Sbjct 6163 TGCCGGCGGATAGCAATGTCGAGAATG-GCGAGGAAAGATCCTTTGCATACGAC 6215
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 819199396864
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |