Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Brettanomyces_20naardenensis_20[genbank_20GCA_5F001753995.1_202016- 10-07] 76 sequences; 11,283,072 total letters Query= AAMG01002236.1 Length=287 Score E Sequences producing significant alignments: (Bits) Value seq52 165 1e-38 >seq52 Length=7685 Score = 165 bits (182), Expect = 1e-38 Identities = 221/294 (75%), Gaps = 20/294 (7%) Strand=Plus/Plus Query 1 GTACGAGAGGAACCGCGGAATTCAGAATAATTGGTTTTTGCGGCTGTCTGACCAGGCAGT 60 ||||||||||||||| | |||||| | |||||| |||||||||| |||| ||| || | Sbjct 5926 GTACGAGAGGAACCGTTCA-TTCAGA-TCATTGGTATTTGCGGCTGCCTGAACAGACATT 5983 Query 61 GCCGCGAAGCTACCATCTGCTGGATTATGGCTGAACGCCTCTAAGTCAGAATCCATGCCA 120 ||||||||||| |||||| |||||||||||||||||||||||||||||||||||||| | Sbjct 5984 ACCGCGAAGCTATCATCTGTTGGATTATGGCTGAACGCCTCTAAGTCAGAATCCATGCTA 6043 Query 121 GAACGGGGTGATTCTCT-----CCTGCACATCGTAGTCGGATACGAAT-AGGC---TTCG 171 ||| ||| ||||| | | | ||| | ||| |||||||||| |||| || | Sbjct 6044 GAAAGGGATGATTTTTTTATGCCTTGCTATTACTAGAAGGATACGAATAAGGCACATTAG 6103 Query 172 -GCCCC--GAACCTTAGCAGGCCGGCAACGGGCGTC-CCGCGGAA--GCGCGGGGCGCTC 225 | | | ||||| |||||||| ||| || || |||||| || ||| | || Sbjct 6104 TGTCGCTGGAACCATAGCAGGCTGGCGCTGGCACTCTTGGCGGAAAGGCCTTGGGTG-TC 6162 Query 226 AGCTGGCGGATTGCAATTTC-ACCATGCGCAGGGATAAATCCTTTGCAGACGAC 278 || ||||||| ||||| || | ||| || ||| | |||||||||| ||||| Sbjct 6163 TGCCGGCGGATAGCAATGTCGAGAATG-GCGAGGAAAGATCCTTTGCATACGAC 6215 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 819199396864