Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Brettanomyces_20naardenensis_20[genbank_20GCA_5F001753995.1_202016- 10-07] 76 sequences; 11,283,072 total letters Query= NC_010671.1 Length=124279 Score E Sequences producing significant alignments: (Bits) Value seq12 208 6e-49 seq23 168 5e-37 seq16 86.0 5e-12 >seq12 Length=1129233 Score = 208 bits (230), Expect = 6e-49 Identities = 1180/1877 (63%), Gaps = 42/1877 (2%) Strand=Plus/Minus Query 65078 TCGACCGTGAACTGGATCGCATTAGCAGCCGCCTTGGTCCTAAGATAGTACATGCCGGTC 65137 || || ||||| ||||| ||| |||||| |||| ||| | | |||||||| || ||| Sbjct 53956 TCAACGGTGAATTGGATTGCAGCAGCAGCAGCCTGGGTACGCAAGTAGTACATACCAGTC 53897 Query 65138 TTGAGGCCAGCACGCCAAGCATAGAAATGCATCGATGATAATTTTGCATAATTCGGCTCG 65197 || || || ||| | ||||| |||||||| | ||||| | | || | Sbjct 53896 TTTAGCCCCTTCTTCCAGCCGTAGAAGTGCATCGAAGTCAATTTACCCATGGTAGGAGCC 53837 Query 65198 GCCACATGCATATTCAACGACTGACTCTGATCGATGTAACGACCACGATCTGCAGCCATG 65257 | || || |||| |||||| |||||||| ||| ||| | || || ||||| Sbjct 53836 TGTAAGTGGATGTTCATCGACTGCGACTGATCGAGGTAGGCACCTCTGTCAGCTGCCATA 53777 Query 65258 TCAATGATACGACGTCCCGATATCTCCCAGACGGTCTTGTACAGGCGACGTACCTCAATT 65317 || |||||| | | | ||||||||| || ||| || || || | | Sbjct 53776 TCGATGATAGCCTTTTGTGGGAGCTCCCAGACAGTACGGTAGAGCTTTTTTATCTTATCT 53717 Query 65318 GGAATCTCCTCAATGTCCTGGACTGAACCAC-GACGTGCAATAATGCGATTACGCATCGA 65376 |||| | | | ||||| ||||| | |||| |||||| || ||| | Sbjct 53716 GGAACGTTTGGCAAATTCTGGATCGAACCGTTGTCGTG-AATAATAAAGTTCTTCATGGC 53658 Query 65377 CTCTGACCACAAACCCAAATCGATAAGATGTTGAACCAAGTGACGATTGATGACTTGGAA 65436 || ||| | ||||| ||||| || | | | || || | |||||| || ||||| Sbjct 53657 ATCATTCCAGATACCCATATCGACAAAGTCTCTCAACATGTAAGGATTGACGATCTGGAA 53598 Query 65437 CTCGCCGGACAGTACACGACGGACATAGATGTTGGACGTGATGGGTTCAAAGGATTCAGT 65496 ||| || | || || | | |||||||| || |||| ||| |||||| | || | Sbjct 53597 CTCACCTGCGAGAACTCTTCTCTGGTAGATGTTCGAGGTGAAGGGCTCAAAGCACTCGTT 53538 Query 65497 GTTGCCTAGAATTTGGGCAGTAGATGCAGTTGGCATGGGAGCGACCAACAATGAGTTTCG 65556 | ||| | ||| |||| |||||| || |||||||| || || ||||| | ||||||| Sbjct 53537 ATAGCCCATAATCTGGGAAGTAGAAGCTGTTGGCATTGGTGCCACCAAGAGCGAGTTTCT 53478 Query 65557 CAATCCGTTCATTTCAATGTTGTGACG-CAATTCGTCCCAGTTCCACATCGGTTTATCG- 65614 ||| |||||| | |||| ||| ||| ||| ||||| | ||| | |||| Sbjct 53477 CAAACCGTTCTTGGCAATCTTG-GACTTCAAAGAATCCCAATCCCAAAG------ATCGG 53425 Query 65615 TCGACATCC-ACGGGCCACATATCCTGTTGCAGGGTTCCGATACTGGCCGGTGAACCGAG 65673 | | | || || ||| | ||| ||| | || | || || ||||| Sbjct 53424 TAGGCTTCTTACC--CCATAAATCGAATTGTAATAAGCCCTTGGATGCAGGAGAACCCTC 53367 Query 65674 GAAACTATCGTACACTCCCTCCTCCTTGGCAAGTTGACAGCTGGTCTCGAGTGCGGCAAA 65733 | || || || |||||||| | ||| |||| || | |||||| || || Sbjct 53366 ATAGCTCTCATATGTACCCTCCTCTTCGGCCAGTTCCGAGGATGCCTCGAGAGCAGCGTG 53307 Query 65734 ATAAATGGTCTCGAAAATGCGTCGATTAAGTTCACGTGCCTCATCGCTCTCGTACGGCAT 65793 ||||| |||||||| || | || | | |||||| || || || |||| | Sbjct 53306 GTAAATAGTCTCGAAGATTTGAATGTTCAACTGACGTGCTTCTGGACTGTCAAACGGAAG 53247 Query 65794 ACCCATCAGGACAAAAGTGTCGGCCAGACCTTGAACTCCAATACCGATGGGACGATGACG 65853 | |||| ||| || |||||||| | |||||| || |||| | ||| || | | ||| Sbjct 53246 GCGCATCTGGAAGAAGGTGTCGGCTAAACCTTGCACACCAACAGCGACTGGTCTGTTACG 53187 Query 65854 CAAATTGGA---ACGTCTCGCCTCAGGTACAGGGTAGTAATTGATATCGATAATGCGATT 65910 || || || |||| ||||| || ||||| || || || | || || | || || Sbjct 53186 CATGTTAGAGTAACGT---GCCTCTGGGACAGGATAATAGTTTCTGTCAATGACACGGTT 53130 Query 65911 CAAATTGCGTGTCACCACATGCACGATACGTCGCAATTGTTCGAAATCAAAATGTTTAGG 65970 ||| || || || | || | | || |||| | ||||| | | || Sbjct 53129 CAAGTTCCGAGTAAGAACTTTGGCAATCTTATGCAACTTCTCGAAGT-------TGTACC 53077 Query 65971 ACGATCGGGAGTGCCG---GACACCACAAACTTGGGAAGGGCAAGAGATGCGAGGTTGCA 66027 |||| || | || || | ||||| || ||| |||||| || | ||| || Sbjct 53076 ACGA--GGTCTTTTCGTCAGATTCGACAAAGGCCGGGAGGCAAAGAGAAGCCAAGTTACA 53019 Query 66028 GACAGCTATCTCGTCAGGAGCGGTATACTCGACAATTTCGGTGCACAGATTACTGCAGCG 66087 |||| | | ||||| || || | ||||||||||| || ||| | || | | Sbjct 53018 GACACCAGTTTCGTCTGGTGCTGAGTACTCGACAATCTCACAGCATAAGTTCGAGGACTT 52959 Query 66088 TATGGTGCCCAAATTCTGTTGATTACTCTTGCGATTGCATGCATCCTTGTACATCATGTA 66147 ||||| ||||| |||||||| |||||||| | || |||||||||||||| | |||| | Sbjct 52958 GATGGTACCCAAGTTCTGTTGGTTACTCTTTCTGTTACATGCATCCTTGTAGAGCATGAA 52899 Query 66148 CGGAGTGCCGGTCTCAACTTGGGACTCAATGATGGCGTGCCAAAGAGCGCGTGCCTTCAC 66207 ||||| ||||| ||| |||| || | || || ||| | | ||||| || Sbjct 52898 TGGAGTACCGGTTTCAGTCTGGGCTTCCAAAATCTGGTACCACAACTTCTGAGCCTTGAC 52839 Query 66208 CGTACGT--ACCGC---CCTACCTTTGCGTTCGTAATGTTCGTAGAGGTGTTCGAAGGAT 66262 |||||| ||||| ||| ||| | ||||| | ||| | | || || Sbjct 52838 GGTACGTCTACCGCGTCCCTCCCTCT-----CGTAACGCGTGTATAAGGCCTCAAACTCG 52784 Query 66263 TCACCCCATACTTCGGACAGACATGGACACTTGTGTGGACACATCAGCGACCAATCACCA 66322 || || | || || || || | ||| | | ||| | | || | ||| | ||| Sbjct 52783 TCTCCGTACACGTCAGAAAGGCCCGGAGCTTCGGATGGCGAAAATAGAGTCCATTGACCG 52724 Query 66323 TCCTGTTCTACACGACGCATAAATAGATCAGGTATCCAGAGGGCGTAGAAGAGATCGCGT 66382 | ||| || ||||| ||| || | || || ||||| ||||| ||| | ||| || Sbjct 52723 TTCTGCTCAACACGCTTCATGAACAAGTCGGGAATCCATAGGGCTGGGAACAAATCACGG 52664 Query 66383 GCTCGTTGCTCCTCAATGCCGTGATTTTTGCGCAAGTCGAGGAACTCAAAGATGTCGGCA 66442 || || ||||| | || ||||| || | | || | ||| || |||||||| || Sbjct 52663 GCACGGATTTCCTCCTTACCATGATTCTTTCTGATATCAATGAAATCGAAGATGTCTGCG 52604 Query 66443 TGCCATGGTTCCAGGTAGATGGCGAACGAGCCCATACGTTTGCCGCCACCTTGGTCGACG 66502 ||||||||||||| || | || | | || | |||| || |||||||||||| Sbjct 52603 TGCCATGGTTCCATATACACTGCAATGGCACCTGGTCTTTTGTTACCTCCTTGGTCGACG 52544 Query 66503 TAGCGAGCGACATTGTTGAAGACACGCAACATCGGTACGAGCCCGTTAGATTTGCCATTG 66562 || | || |||||||| ||||| | ||| || | | || || || | || ||| Sbjct 52543 TATCTGGCAGTGTTGTTGAAAACACGAATCATTGGAATAATACCATTTGAGGTACCGTTG 52484 Query 66563 GTGCCGTCGATGGGGGATCCTCGTGCCCGTATATCGTGAACATTCAGACCAATACCACCG 66622 || ||| ||||| || || || || | | ||||| || || ||||||||| ||| Sbjct 52483 GTACCGGCGATGTAAGAGCCAGTGGCACGAACGTTGTGAATATGCATACCAATACCGCCG 52424 Query 66623 GCCGTCTTCGAGATGGCAGCACAATCGGCCACTGTCCGGAATATGCCGTCAATGGAGTCA 66682 || |||||||| || ||||| || || || | | ||||| ||||| || || Sbjct 52423 GCGGTCTTCGAAATCAAGGCACACTCTTTCAAAGTATCGTAGATGCCTTCAATAGAATCG 52364 Query 66683 CCCTTGATGGTCAGGAGGTAGCATGAACTAAGTTGGGGTTTGGGTGTGGCGGCCGAGAAG 66742 |||| || | | | |||| ||| | || || | || || | || ||| Sbjct 52363 TCCTTCATCGCAACCAAAAAGCAGGAAGACATCTGCGGATGTGGGGTACCCGCATTGAAC 52304 Query 66743 AGGGTGGGTGTAGCGTGCGTAAAGTAATGGCGAGACATGTAATTGTACGTCTCGATGACA 66802 | || || | |||||| || || ||| | ||||| || || ||||||||||| Sbjct 52303 AAAGTTGGAGAAGCGTGGGTGAAATAACGCTCGGACATTAGGTTATAGGTCTCGATGACT 52244 Query 66803 GCATCAATGTTTTCGCCATGAATCCCGAGTGCACATCGCATCAGGAGGTATTGAGGCCGT 66862 || | || |||||||| |||| ||| || ||| | || | ||| || | Sbjct 52243 CTTGGGATATCGTCACCATGAATTCCGACGGCAACTCTCATAATCAGATGTTGTGGTCTC 52184 Query 66863 TCGACCAGCCGATCCTTGATATGCATTAAGTAGGAGCGTTCCAGGGTCTTGATACCAAAG 66922 || | | | | ||||| || || ||||| || |||| ||| |||| ||||||| Sbjct 52183 TCTGCAACTTTACCATTGATTCTCAATAGATAGGAACGCTCCAAGGTTTTGAAACCAAAG 52124 Query 66923 TACGAGTAATTGAAATC 66939 || ||| ||||| || Sbjct 52123 TAGTTGTAGTTGAAGTC 52107 >seq23 Length=838141 Score = 168 bits (186), Expect = 5e-37 Identities = 386/573 (67%), Gaps = 15/573 (3%) Strand=Plus/Plus Query 61027 GAACCCCTATTGCAAGAGAATCCTCGTCGTTTCGTATTGTTCCCCATCGAGTATGAGGAT 61086 ||||| | ||| ||||||| | | | || || ||||||| ||| | || || ||| Sbjct 742128 GAACCTTTGTTGAAAGAGAACAAGCATAGATTTGTCATGTTCCCTATCCAATACGATGAT 742187 Query 61087 ATTTGGCGCATGTACAAAAAGGCGGAAGCTTCCTTCTGGACGGTGGAGGAGGTCGATTTG 61146 ||||||| |||||||| ||||| ||||| || |||||||| | ||| ||| ||||| | Sbjct 742188 ATTTGGCAGATGTACAAGAAGGCTGAAGCATCTTTCTGGACTGCGGAAGAGATCGATCTC 742247 Query 61147 TCCAAAGACATGAATGACTGGGAGC----GTTTATCGAGCGGTGAACAACATTTCATTAA 61202 || || || | ||||||| || | ||| | | |||| | ||||||| Sbjct 742248 TCAAAGGATGTTCCTGACTGGAAGAACAAGCTTAATGC-CAATGAAAGATATTTCATCGC 742306 Query 61203 ACATGTGTTGGCGTTCTTTGCCGCTTCGGACGGTATCGTCAATGAGAATTTATTGGAACG 61262 || ||||||||| ||||||||||| || || |||||||| |||||||||| | || Sbjct 742307 ACGTGTGTTGGCCTTCTTTGCCGCCTCTGATGGTATCGTTGATGAGAATTTGATTCAAAA 742366 Query 61263 TTTCGCGCAGGAGGTGCAAGTGTCGGAGGCGCGTTGTTTCTACGGCTTCCAGATTGCCAT 61322 ||| | ||| | || || || | ||||| | |||||||| |||||||| | Sbjct 742367 CTTCACACAGAACGTTCAGCTGCCAGAGGCTAGGGCCTTCTACGGATTCCAGATCATGGT 742426 Query 61323 GGAGAATGTCCACTCGGAGATGTACAGTGTTCTCATCGATACGTACATCAGGGAGCGGGC 61382 |||||| |||| || |||| || | | | | || || ||| | | || | Sbjct 742427 GGAGAACATCCATTCTGAGACCTATTCTCTCTTGCTTGAAACCTACGTGACAGATAAGAA 742486 Query 61383 GGAACGTGAACGATTGTTCAATGCCATCGAGACGATACCGGCGGTGAAGCGGAAAGCGGA 61442 |||| ||| || || |||||||| || || || || | | || ||||| | | Sbjct 742487 GGAATCTGATTACTTATTTAATGCCATTGAAACTATTCCCCCAATTAA--GGAAAAGGCA 742544 Query 61443 T--TGGGC-CTTCAATTGGATCACCAGTACAACG--GCTACATTTGGTGAACGATTGCTG 61497 | ||||| |||| |||||||| ||| ||| | || || | ||| ||||| | Sbjct 742545 TTATGGGCTCTTC-GTTGGATCAACAG--CAAGGATGCACTATACGCAGAAAGATTGGTC 742601 Query 61498 GCATTTGCGGTGGTCGAGGGTGTATTTTTCAGTGGATCGTTTGCCGCAATCTTTTGGTTG 61557 || || || | |||| ||||| || ||| || || ||||| || ||||||||| | Sbjct 742602 GCCTTCGCCGCTATCGAAGGTGTCTTCTTCTCCGGTTCATTTGCGGCCATCTTTTGGCTA 742661 Query 61558 AAGAAACGTGGACTTATGCCCGGTCTGACCTTC 61590 ||||| | || | ||||| ||||| |||||| Sbjct 742662 AAGAAGAGAGGTTTGATGCCAGGTCTTACCTTC 742694 >seq16 Length=109755 Score = 86.0 bits (94), Expect = 5e-12 Identities = 73/90 (81%), Gaps = 0/90 (0%) Strand=Plus/Plus Query 9146 TTTGGGCCCCATTTACGGTTTCCAGTGGCGACATTTCGGTGCTCGGTACATCGATTGTCA 9205 |||||| || || ||||| ||||| ||| |||||||||||||| ||| |||||||| | Sbjct 14751 TTTGGGTCCTATCTACGGATTCCAATGGAGACATTTCGGTGCTAAGTATGTCGATTGTGA 14810 Query 9206 TACGGACTATACGGGCCAAGGTGTGGATCA 9235 ||| |||||||| || ||||| | ||||| Sbjct 14811 TACCGACTATACCGGACAAGGATTTGATCA 14840 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 397567631752640