Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Candida_20sp._20JCM_2015000_20[genbank_20GCA_5F001950555.1_202016- 12-06] 15 sequences; 9,213,885 total letters Query= NC_032108.1 Length=589068 Score E Sequences producing significant alignments: (Bits) Value seq4 120 1e-21 seq2 95.1 5e-14 >seq4 Length=1514682 Score = 120 bits (132), Expect = 1e-21 Identities = 281/418 (67%), Gaps = 6/418 (1%) Strand=Plus/Minus Query 12631 GTCTTTGGTATCT--GGAACGTGCAAGGTTACAAAGTCGGAACGAGACAAGAGACCTTGC 12688 |||| ||| | || ||||||||||| || || || ||||| | ||||||| | | Sbjct 16222 GTCTCTGGCAACTCCGGAACGTGCAATGTGACGAAATCGGAGTTGGCCAAGAGATCGTCG 16163 Query 12689 AGAGTAGACACTTG-CTTACTGTTGCCTAGAGGTAGTTTCTTGAGAACATCGTAAAAGAA 12747 || || || || ||| | ||| || |||| | | | || |||||||| ||| Sbjct 16162 AGGGTCTCGACCTGTCTTGCCGTT-CCGAGAGACATGATGCTCAGCACATCGTAGTAGAG 16104 Query 12748 AACTTTCATGCCTAGACACTCTGCTAGGACAGAGACCTGAGAACCAATGTTACCATAACC 12807 ||| | ||| || ||| |||| || || ||||| | ||| |||||||||| || ||||| Sbjct 16103 AACGTGCATTCCGAGAGACTCGGCCAGCACAGACAACTGCGAACCAATGTGTCCGTAACC 16044 Query 12808 TACTATACCTAGGGTCTTTCCTCTAACTTCACGGCAACCTTGAGAAGTCTTGTTCCAAAT 12867 || ||||| || ||||| || | ||||| | ||||| ||| |||| ||||| | Sbjct 16043 GACAATACCCAGAGTCTTACCACGGACTTCCCAGCAACGCGAAGACTTCTTATTCCAGGT 15984 Query 12868 GCCTTGGTGTAGTTCTTTGTTTCTATCTCCAACCTGACGAGAAAGATTAATTAGTTGTCC 12927 ||| ||||| | || ||| || || | ||| ||||| || | || | | | Sbjct 15983 GCCCTGGTGCATCTCCAACGATCTGTCACCCATCTGGCGAGACAGCGTGATGACCTCGGC 15924 Query 12928 TATGATGAGCTCTGCCACGCTTCTAGTGTTGCAAAAGGGAGAATTAAAGACTGCAATGCC 12987 | | | | ||| || ||| ||| | ||| | || ||||| || || || ||||| || Sbjct 15923 GAGGGTCATCTCAGCGACGGATCTCGAATTGGAGAATGGAGAGTTGAACACGGCAATTCC 15864 Query 12988 TAGTTTGGTAGCCATGTCTAGATTAACCT-GATCGTAACCAATGCAGAAGCATCCTAT 13044 | |||| ||| || |||| |||| | |||| ||||| |||||||| || || Sbjct 15863 GTGCTTGGCAGCGTACTCGAGATCGACCTGGTTCGT-TCCAATACAGAAGCAACCGAT 15807 >seq2 Length=2777425 Score = 95.1 bits (104), Expect = 5e-14 Identities = 107/141 (76%), Gaps = 2/141 (1%) Strand=Plus/Minus Query 364430 GTCATACGAGAGGGAATGGAGAGAGGGTTGATGATGATGTCAGGCACCATGCCGTCAGCG 364489 |||||||| || ||||| || | |||||||||||||| || ||||| | || || || Sbjct 601563 GTCATACGCGAAGGAATACAGTGCGGGTTGATGATGATATCCGGCACGACACCCTCCGCA 601504 Query 364490 GTAAAGGGCATATCTTCG-GGAGGAACGATGAGACCAATGGTTCCCTTTTGCGCATAGCG 364548 || || |||||||||||| || || | | | | ||| ||||| ||||| || | | || Sbjct 601503 GTGAATGGCATATCTTCGTGGCGGTAAG-TCATACCGATGGTACCCTTCTGTCCGTGACG 601445 Query 364549 AGAAGCAAACTTGTCGCCAAT 364569 ||| ||||||||||| || || Sbjct 601444 AGAGGCAAACTTGTCACCGAT 601424 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1884886037748395