Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Geotrichum_20candidum_20[genbank_20GCA_5F000743665.1_202014-08-26] 560 sequences; 41,384,521 total letters Query= AAMG01000185.1 Length=266 Score E Sequences producing significant alignments: (Bits) Value seq357 286 5e-75 seq275 286 5e-75 seq381 158 2e-36 seq278 158 2e-36 seq489 84.2 3e-14 >seq357 Length=2118 Score = 286 bits (316), Expect = 5e-75 Identities = 203/229 (89%), Gaps = 3/229 (1%) Strand=Plus/Minus Query 1 GTACAAAGGGCAGGGACGTAGTCAACGCGAGCTTGATGACTCGCGCTTACTAGGAATTTC 60 |||||||||||||||||||| ||||||| |||| ||||||| |||||||||||||||| | Sbjct 580 GTACAAAGGGCAGGGACGTATTCAACGCAAGCT-GATGACTTGCGCTTACTAGGAATT-C 523 Query 61 CTCGTTGAAGACCAACAATTGCAATGATCTATCCCCATCACGATGAAATTTCA-AAGATT 119 ||||||||||| ||| |||||||||| |||||||||| ||||| | ||| | |||||| Sbjct 522 CTCGTTGAAGAGCAATAATTGCAATGCTCTATCCCCAGCACGACAGAGTTTAACAAGATT 463 Query 120 ACCCGGACCTGTCGGCCAAGGTGATAGACTCGTTGAATACATCAGTGTAGCGCGCGTGCG 179 |||| | ||| ||| |||||||||| |||||||| | ||||||||||||||||||| Sbjct 462 ACCCAGGCCTTTCGACCAAGGTGATGAACTCGTTGGCTCTGTCAGTGTAGCGCGCGTGCG 403 Query 180 GCCCAGAACATCTAAGGGCATCACAGACCTGTTATTGCCTCAAACTTCC 228 ||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 402 GCCCAGAACATCTAAGGGCATCACAGACCTGTTATTGCCTCAAACTTCC 354 >seq275 Length=7890 Score = 286 bits (316), Expect = 5e-75 Identities = 203/229 (89%), Gaps = 3/229 (1%) Strand=Plus/Plus Query 1 GTACAAAGGGCAGGGACGTAGTCAACGCGAGCTTGATGACTCGCGCTTACTAGGAATTTC 60 |||||||||||||||||||| ||||||| |||| ||||||| |||||||||||||||| | Sbjct 6965 GTACAAAGGGCAGGGACGTATTCAACGCAAGCT-GATGACTTGCGCTTACTAGGAATT-C 7022 Query 61 CTCGTTGAAGACCAACAATTGCAATGATCTATCCCCATCACGATGAAATTTCA-AAGATT 119 ||||||||||| ||| |||||||||| |||||||||| ||||| | ||| | |||||| Sbjct 7023 CTCGTTGAAGAGCAATAATTGCAATGCTCTATCCCCAGCACGACAGAGTTTAACAAGATT 7082 Query 120 ACCCGGACCTGTCGGCCAAGGTGATAGACTCGTTGAATACATCAGTGTAGCGCGCGTGCG 179 |||| | ||| ||| |||||||||| |||||||| | ||||||||||||||||||| Sbjct 7083 ACCCAGGCCTTTCGACCAAGGTGATGAACTCGTTGGCTCTGTCAGTGTAGCGCGCGTGCG 7142 Query 180 GCCCAGAACATCTAAGGGCATCACAGACCTGTTATTGCCTCAAACTTCC 228 ||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 7143 GCCCAGAACATCTAAGGGCATCACAGACCTGTTATTGCCTCAAACTTCC 7191 >seq381 Length=820 Score = 158 bits (174), Expect = 2e-36 Identities = 104/115 (90%), Gaps = 0/115 (0%) Strand=Plus/Minus Query 114 AAGATTACCCGGACCTGTCGGCCAAGGTGATAGACTCGTTGAATACATCAGTGTAGCGCG 173 |||||||||| | ||| ||| |||||||||| |||||||| | ||||||||||||| Sbjct 803 AAGATTACCCAGGCCTTTCGACCAAGGTGATGAACTCGTTGGCTCTGTCAGTGTAGCGCG 744 Query 174 CGTGCGGCCCAGAACATCTAAGGGCATCACAGACCTGTTATTGCCTCAAACTTCC 228 ||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 743 CGTGCGGCCCAGAACATCTAAGGGCATCACAGACCTGTTATTGCCTCAAACTTCC 689 >seq278 Length=3014 Score = 158 bits (174), Expect = 2e-36 Identities = 104/115 (90%), Gaps = 0/115 (0%) Strand=Plus/Plus Query 114 AAGATTACCCGGACCTGTCGGCCAAGGTGATAGACTCGTTGAATACATCAGTGTAGCGCG 173 |||||||||| | ||| ||| |||||||||| |||||||| | ||||||||||||| Sbjct 4 AAGATTACCCAGGCCTTTCGACCAAGGTGATGAACTCGTTGGCTCTGTCAGTGTAGCGCG 63 Query 174 CGTGCGGCCCAGAACATCTAAGGGCATCACAGACCTGTTATTGCCTCAAACTTCC 228 ||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 64 CGTGCGGCCCAGAACATCTAAGGGCATCACAGACCTGTTATTGCCTCAAACTTCC 118 >seq489 Length=619 Score = 84.2 bits (92), Expect = 3e-14 Identities = 46/46 (100%), Gaps = 0/46 (0%) Strand=Plus/Plus Query 183 CAGAACATCTAAGGGCATCACAGACCTGTTATTGCCTCAAACTTCC 228 |||||||||||||||||||||||||||||||||||||||||||||| Sbjct 1 CAGAACATCTAAGGGCATCACAGACCTGTTATTGCCTCAAACTTCC 46 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 751995920400