Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Geotrichum_20candidum_20[genbank_20GCA_5F000743665.1_202014-08-26]
560 sequences; 41,384,521 total letters
Query= AAMG01000185.1
Length=266
Score E
Sequences producing significant alignments: (Bits) Value
seq357 286 5e-75
seq275 286 5e-75
seq381 158 2e-36
seq278 158 2e-36
seq489 84.2 3e-14
>seq357
Length=2118
Score = 286 bits (316), Expect = 5e-75
Identities = 203/229 (89%), Gaps = 3/229 (1%)
Strand=Plus/Minus
Query 1 GTACAAAGGGCAGGGACGTAGTCAACGCGAGCTTGATGACTCGCGCTTACTAGGAATTTC 60
|||||||||||||||||||| ||||||| |||| ||||||| |||||||||||||||| |
Sbjct 580 GTACAAAGGGCAGGGACGTATTCAACGCAAGCT-GATGACTTGCGCTTACTAGGAATT-C 523
Query 61 CTCGTTGAAGACCAACAATTGCAATGATCTATCCCCATCACGATGAAATTTCA-AAGATT 119
||||||||||| ||| |||||||||| |||||||||| ||||| | ||| | ||||||
Sbjct 522 CTCGTTGAAGAGCAATAATTGCAATGCTCTATCCCCAGCACGACAGAGTTTAACAAGATT 463
Query 120 ACCCGGACCTGTCGGCCAAGGTGATAGACTCGTTGAATACATCAGTGTAGCGCGCGTGCG 179
|||| | ||| ||| |||||||||| |||||||| | |||||||||||||||||||
Sbjct 462 ACCCAGGCCTTTCGACCAAGGTGATGAACTCGTTGGCTCTGTCAGTGTAGCGCGCGTGCG 403
Query 180 GCCCAGAACATCTAAGGGCATCACAGACCTGTTATTGCCTCAAACTTCC 228
|||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 402 GCCCAGAACATCTAAGGGCATCACAGACCTGTTATTGCCTCAAACTTCC 354
>seq275
Length=7890
Score = 286 bits (316), Expect = 5e-75
Identities = 203/229 (89%), Gaps = 3/229 (1%)
Strand=Plus/Plus
Query 1 GTACAAAGGGCAGGGACGTAGTCAACGCGAGCTTGATGACTCGCGCTTACTAGGAATTTC 60
|||||||||||||||||||| ||||||| |||| ||||||| |||||||||||||||| |
Sbjct 6965 GTACAAAGGGCAGGGACGTATTCAACGCAAGCT-GATGACTTGCGCTTACTAGGAATT-C 7022
Query 61 CTCGTTGAAGACCAACAATTGCAATGATCTATCCCCATCACGATGAAATTTCA-AAGATT 119
||||||||||| ||| |||||||||| |||||||||| ||||| | ||| | ||||||
Sbjct 7023 CTCGTTGAAGAGCAATAATTGCAATGCTCTATCCCCAGCACGACAGAGTTTAACAAGATT 7082
Query 120 ACCCGGACCTGTCGGCCAAGGTGATAGACTCGTTGAATACATCAGTGTAGCGCGCGTGCG 179
|||| | ||| ||| |||||||||| |||||||| | |||||||||||||||||||
Sbjct 7083 ACCCAGGCCTTTCGACCAAGGTGATGAACTCGTTGGCTCTGTCAGTGTAGCGCGCGTGCG 7142
Query 180 GCCCAGAACATCTAAGGGCATCACAGACCTGTTATTGCCTCAAACTTCC 228
|||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 7143 GCCCAGAACATCTAAGGGCATCACAGACCTGTTATTGCCTCAAACTTCC 7191
>seq381
Length=820
Score = 158 bits (174), Expect = 2e-36
Identities = 104/115 (90%), Gaps = 0/115 (0%)
Strand=Plus/Minus
Query 114 AAGATTACCCGGACCTGTCGGCCAAGGTGATAGACTCGTTGAATACATCAGTGTAGCGCG 173
|||||||||| | ||| ||| |||||||||| |||||||| | |||||||||||||
Sbjct 803 AAGATTACCCAGGCCTTTCGACCAAGGTGATGAACTCGTTGGCTCTGTCAGTGTAGCGCG 744
Query 174 CGTGCGGCCCAGAACATCTAAGGGCATCACAGACCTGTTATTGCCTCAAACTTCC 228
|||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 743 CGTGCGGCCCAGAACATCTAAGGGCATCACAGACCTGTTATTGCCTCAAACTTCC 689
>seq278
Length=3014
Score = 158 bits (174), Expect = 2e-36
Identities = 104/115 (90%), Gaps = 0/115 (0%)
Strand=Plus/Plus
Query 114 AAGATTACCCGGACCTGTCGGCCAAGGTGATAGACTCGTTGAATACATCAGTGTAGCGCG 173
|||||||||| | ||| ||| |||||||||| |||||||| | |||||||||||||
Sbjct 4 AAGATTACCCAGGCCTTTCGACCAAGGTGATGAACTCGTTGGCTCTGTCAGTGTAGCGCG 63
Query 174 CGTGCGGCCCAGAACATCTAAGGGCATCACAGACCTGTTATTGCCTCAAACTTCC 228
|||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 64 CGTGCGGCCCAGAACATCTAAGGGCATCACAGACCTGTTATTGCCTCAAACTTCC 118
>seq489
Length=619
Score = 84.2 bits (92), Expect = 3e-14
Identities = 46/46 (100%), Gaps = 0/46 (0%)
Strand=Plus/Plus
Query 183 CAGAACATCTAAGGGCATCACAGACCTGTTATTGCCTCAAACTTCC 228
||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1 CAGAACATCTAAGGGCATCACAGACCTGTTATTGCCTCAAACTTCC 46
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 751995920400
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |