Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Geotrichum_20candidum_20[genbank_20GCA_5F000743665.1_202014-08-26]
560 sequences; 41,384,521 total letters
Query= AAMG01000190.1
Length=117
Score E
Sequences producing significant alignments: (Bits) Value
seq381 194 9e-48
seq275 194 9e-48
seq278 192 3e-47
seq361 179 2e-43
seq489 172 3e-41
seq357 71.6 8e-11
>seq381
Length=820
Score = 194 bits (214), Expect = 9e-48
Identities = 114/117 (97%), Gaps = 1/117 (1%)
Strand=Plus/Minus
Query 1 GAACCCAAAGACTTTGATTTCTCGTAAGGTGCCGAGCGAGTCAAAATGATAACATCGCCC 60
|||||||||||||||||||||||||||||||||||||||||||||| | |||||||||||
Sbjct 386 GAACCCAAAGACTTTGATTTCTCGTAAGGTGCCGAGCGAGTCAAAAAG-TAACATCGCCC 328
Query 61 GATCCCTAGTCGGCATAGTTTACGGTTAAGACTACGACGGTATCTGATCGTCTTCGA 117
|||||||||||||||||||||| ||||||||||||||||||||||||||||||||||
Sbjct 327 GATCCCTAGTCGGCATAGTTTATGGTTAAGACTACGACGGTATCTGATCGTCTTCGA 271
>seq275
Length=7890
Score = 194 bits (214), Expect = 9e-48
Identities = 113/117 (97%), Gaps = 0/117 (0%)
Strand=Plus/Plus
Query 1 GAACCCAAAGACTTTGATTTCTCGTAAGGTGCCGAGCGAGTCAAAATGATAACATCGCCC 60
|||||||||||||||||||||||||||||||||||||||||||||| |||||||||||
Sbjct 7494 GAACCCAAAGACTTTGATTTCTCGTAAGGTGCCGAGCGAGTCAAAAAAGTAACATCGCCC 7553
Query 61 GATCCCTAGTCGGCATAGTTTACGGTTAAGACTACGACGGTATCTGATCGTCTTCGA 117
|||||||||||||||||||||| ||||||||||||||||||||||||||||||||||
Sbjct 7554 GATCCCTAGTCGGCATAGTTTATGGTTAAGACTACGACGGTATCTGATCGTCTTCGA 7610
>seq278
Length=3014
Score = 192 bits (212), Expect = 3e-47
Identities = 114/118 (97%), Gaps = 1/118 (1%)
Strand=Plus/Plus
Query 1 GAACCCAAAGACTTTGATTTCTCGTAAGGTGCCGAGCGAGTCAAAATGA-TAACATCGCC 59
|||||||||||||||||||||||||||||||||||||||||||||| | ||||||||||
Sbjct 421 GAACCCAAAGACTTTGATTTCTCGTAAGGTGCCGAGCGAGTCAAAAAAAGTAACATCGCC 480
Query 60 CGATCCCTAGTCGGCATAGTTTACGGTTAAGACTACGACGGTATCTGATCGTCTTCGA 117
||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||
Sbjct 481 CGATCCCTAGTCGGCATAGTTTATGGTTAAGACTACGACGGTATCTGATCGTCTTCGA 538
>seq361
Length=807
Score = 179 bits (198), Expect = 2e-43
Identities = 111/116 (96%), Gaps = 2/116 (2%)
Strand=Plus/Minus
Query 4 CCCAAAGACTTTGATTTCTCGTAAGGTGCCGAGCGAGTCAAAATGA-TAACATCGCCCGA 62
||||||||||||||||||||||||||||||||||||||||||| | |||||||||||||
Sbjct 742 CCCAAAGACTTTGATTTCTCGTAAGGTGCCGAGCGAGTCAAAAAAAGTAACATCGCCCGA 683
Query 63 TCCCTAGT-CGGCATAGTTTACGGTTAAGACTACGACGGTATCTGATCGTCTTCGA 117
|||||||| |||||||||||| ||||||||||||||||||||||||||||||||||
Sbjct 682 TCCCTAGTTCGGCATAGTTTATGGTTAAGACTACGACGGTATCTGATCGTCTTCGA 627
>seq489
Length=619
Score = 172 bits (190), Expect = 3e-41
Identities = 111/119 (93%), Gaps = 2/119 (2%)
Strand=Plus/Plus
Query 1 GAACCCAAAGACTTTGATTTCTCGTAAGGTGCCGAGCGAGTCAAAATGATAACATCG-CC 59
|||||||||||||||||||||||||||||||||||||||||||||| |||||||| ||
Sbjct 349 GAACCCAAAGACTTTGATTTCTCGTAAGGTGCCGAGCGAGTCAAAAAAGTAACATCGACC 408
Query 60 CG-ATCCCTAGTCGGCATAGTTTACGGTTAAGACTACGACGGTATCTGATCGTCTTCGA 117
|| |||||||| ||||||||||| ||||||||||||||||||||||||||||||||||
Sbjct 409 CGAATCCCTAGCTGGCATAGTTTATGGTTAAGACTACGACGGTATCTGATCGTCTTCGA 467
>seq357
Length=2118
Score = 71.6 bits (78), Expect = 8e-11
Identities = 43/44 (98%), Gaps = 1/44 (2%)
Strand=Plus/Minus
Query 4 CCCAAAGA-CTTTGATTTCTCGTAAGGTGCCGAGCGAGTCAAAA 46
|||||||| |||||||||||||||||||||||||||||||||||
Sbjct 45 CCCAAAGAACTTTGATTTCTCGTAAGGTGCCGAGCGAGTCAAAA 2
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 278398538400
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |