Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Geotrichum_20candidum_20[genbank_20GCA_5F000743665.1_202014-08-26] 560 sequences; 41,384,521 total letters Query= AAMG01002236.1 Length=287 Score E Sequences producing significant alignments: (Bits) Value seq372 311 1e-82 seq275 311 1e-82 seq284 304 2e-80 seq104 269 4e-70 seq483 113 7e-23 >seq372 Length=687 Score = 311 bits (344), Expect = 1e-82 Identities = 239/278 (86%), Gaps = 4/278 (1%) Strand=Plus/Minus Query 1 GTACGAGAGGAACCGCGGAATTCAGAATAATTGGTTTTTGCGGCTGTCTGACCAGGCAGT 60 |||||||||||||||| || |||||| ||||||||||||||||||||||||| ||||||| Sbjct 628 GTACGAGAGGAACCGCTGA-TTCAGA-TAATTGGTTTTTGCGGCTGTCTGACAAGGCAGT 571 Query 61 GCCGCGAAGCTACCATCTGCTGGATTATGGCTGAACGCCTCTAAGTCAGAATCCATGCCA 120 ||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||| Sbjct 570 GCCGCGAAGCTACCATCTGCTGGATAATGGCTGAACGCCTCTAAGTCAGAATCCATGCCA 511 Query 121 GAACGGGGTGATTCTCTCCTGCACATCGTAGTCGGATACGAATAGGCTTCGGCCCCGAAC 180 ||| | |||||| || ||| |||||||||||||||||||||||||||||||||| | | Sbjct 510 GAAAGCGGTGATACT-TCCCACACATCGTAGTCGGATACGAATAGGCTTCGGCCCTGCAT 452 Query 181 CTTAGCAGGCCGGCAACGGGCGTCCCGCGGAAGCGCGGGGCGCTCAGCTGGCGGATTGCA 240 |||||| || ||| |||| | | | ||| || | ||| ||||| || ||||| Sbjct 451 CTTAGCTGGTTGGCGACGGCTCAGCGGTGAAAGTCCGTTGAGCT-AGCTGACGTCTTGCA 393 Query 241 ATTTCACCATGCGCAGGGATAAATCCTTTGCAGACGAC 278 |||| |||||||| ||||||||||||||||| ||||| Sbjct 392 ATTTTACCATGCGTGGGGATAAATCCTTTGCATACGAC 355 >seq275 Length=7890 Score = 311 bits (344), Expect = 1e-82 Identities = 239/278 (86%), Gaps = 4/278 (1%) Strand=Plus/Minus Query 1 GTACGAGAGGAACCGCGGAATTCAGAATAATTGGTTTTTGCGGCTGTCTGACCAGGCAGT 60 |||||||||||||||| || |||||| ||||||||||||||||||||||||| ||||||| Sbjct 3325 GTACGAGAGGAACCGCTGA-TTCAGA-TAATTGGTTTTTGCGGCTGTCTGACAAGGCAGT 3268 Query 61 GCCGCGAAGCTACCATCTGCTGGATTATGGCTGAACGCCTCTAAGTCAGAATCCATGCCA 120 ||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||| Sbjct 3267 GCCGCGAAGCTACCATCTGCTGGATAATGGCTGAACGCCTCTAAGTCAGAATCCATGCCA 3208 Query 121 GAACGGGGTGATTCTCTCCTGCACATCGTAGTCGGATACGAATAGGCTTCGGCCCCGAAC 180 ||| | |||||| || ||| |||||||||||||||||||||||||||||||||| | | Sbjct 3207 GAAAGCGGTGATACT-TCCCACACATCGTAGTCGGATACGAATAGGCTTCGGCCCTGCAT 3149 Query 181 CTTAGCAGGCCGGCAACGGGCGTCCCGCGGAAGCGCGGGGCGCTCAGCTGGCGGATTGCA 240 |||||| || ||| |||| | | | ||| || | ||| ||||| || ||||| Sbjct 3148 CTTAGCTGGTTGGCGACGGCTCAGCGGTGAAAGTCCGTTGAGCT-AGCTGACGTCTTGCA 3090 Query 241 ATTTCACCATGCGCAGGGATAAATCCTTTGCAGACGAC 278 |||| |||||||| ||||||||||||||||| ||||| Sbjct 3089 ATTTTACCATGCGTGGGGATAAATCCTTTGCATACGAC 3052 >seq284 Length=3082 Score = 304 bits (336), Expect = 2e-80 Identities = 238/278 (86%), Gaps = 5/278 (2%) Strand=Plus/Minus Query 1 GTACGAGAGGAACCGCGGAATTCAGAATAATTGGTTTTTGCGGCTGTCTGACCAGGCAGT 60 |||||||||||||||| || |||||| ||||||||||| ||||||||||||| ||||||| Sbjct 1234 GTACGAGAGGAACCGCTGA-TTCAGA-TAATTGGTTTT-GCGGCTGTCTGACAAGGCAGT 1178 Query 61 GCCGCGAAGCTACCATCTGCTGGATTATGGCTGAACGCCTCTAAGTCAGAATCCATGCCA 120 ||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||| Sbjct 1177 GCCGCGAAGCTACCATCTGCTGGATAATGGCTGAACGCCTCTAAGTCAGAATCCATGCCA 1118 Query 121 GAACGGGGTGATTCTCTCCTGCACATCGTAGTCGGATACGAATAGGCTTCGGCCCCGAAC 180 ||| | |||||| || ||| |||||||||||||||||||||||||||||||||| | | Sbjct 1117 GAAAGCGGTGATACT-TCCCACACATCGTAGTCGGATACGAATAGGCTTCGGCCCTGCAT 1059 Query 181 CTTAGCAGGCCGGCAACGGGCGTCCCGCGGAAGCGCGGGGCGCTCAGCTGGCGGATTGCA 240 |||||| || ||| |||| | | | ||| || | ||| ||||| || ||||| Sbjct 1058 CTTAGCTGGTTGGCGACGGCTCAGCGGTGAAAGTCCGTTGAGCT-AGCTGACGTCTTGCA 1000 Query 241 ATTTCACCATGCGCAGGGATAAATCCTTTGCAGACGAC 278 |||| |||||||| ||||||||||||||||| ||||| Sbjct 999 ATTTTACCATGCGTGGGGATAAATCCTTTGCATACGAC 962 >seq104 Length=58961 Score = 269 bits (298), Expect = 4e-70 Identities = 207/243 (85%), Gaps = 2/243 (1%) Strand=Plus/Minus Query 36 TTTTGCGGCTGTCTGACCAGGCAGTGCCGCGAAGCTACCATCTGCTGGATTATGGCTGAA 95 ||||||||||||||||| |||||||||||||||||||||||||||||||| ||||||||| Sbjct 58957 TTTTGCGGCTGTCTGACAAGGCAGTGCCGCGAAGCTACCATCTGCTGGATAATGGCTGAA 58898 Query 96 CGCCTCTAAGTCAGAATCCATGCCAGAACGGGGTGATTCTCTCCTGCACATCGTAGTCGG 155 |||||||||||||||||||||||||||| | |||||| || ||| |||||||||||||| Sbjct 58897 CGCCTCTAAGTCAGAATCCATGCCAGAAAGCGGTGATACT-TCCCACACATCGTAGTCGG 58839 Query 156 ATACGAATAGGCTTCGGCCCCGAACCTTAGCAGGCCGGCAACGGGCGTCCCGCGGAAGCG 215 |||||||||||||||||||| | | |||||| || ||| |||| | | | ||| Sbjct 58838 ATACGAATAGGCTTCGGCCCTGCATCTTAGCTGGTTGGCGACGGCTCAGCGGTGAAAGTC 58779 Query 216 CGGGGCGCTCAGCTGGCGGATTGCAATTTCACCATGCGCAGGGATAAATCCTTTGCAGAC 275 || | ||| ||||| || ||||||||| |||||||| ||||||||||||||||| || Sbjct 58778 CGTTGAGCT-AGCTGACGTCTTGCAATTTTACCATGCGTGGGGATAAATCCTTTGCATAC 58720 Query 276 GAC 278 ||| Sbjct 58719 GAC 58717 >seq483 Length=789 Score = 113 bits (124), Expect = 7e-23 Identities = 110/139 (79%), Gaps = 2/139 (1%) Strand=Plus/Plus Query 141 GCACATCGTAGTCGGATACG-AATAGGCTTCGGCCCCGAACCTTAGCAGGCCGGCAACGG 199 |||||||||||||||||||| ||||||||||||||| | | |||||| || ||| |||| Sbjct 333 GCACATCGTAGTCGGATACGKAATAGGCTTCGGCCCTGCATCTTAGCTGGTTGGCGACGG 392 Query 200 GCGTCCCGCGGAAGCGCGGGGCGCTCAGCTGGCGGATTGCAATTTCACCATGCGCAGGGA 259 | | | ||| || | ||| ||||| || ||||||||| |||||||| |||| Sbjct 393 CTCAGCGGTGAAAGTCCGTTGAGCT-AGCTGACGTCTTGCAATTTTACCATGCGTGGGGA 451 Query 260 TAAATCCTTTGCAGACGAC 278 ||||||||||||| ||||| Sbjct 452 TAAATCCTTTGCATACGAC 470 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 819195555840