Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Geotrichum_20candidum_20[genbank_20GCA_5F000743665.1_202014-08-26]
560 sequences; 41,384,521 total letters
Query= AAMG01002236.1
Length=287
Score E
Sequences producing significant alignments: (Bits) Value
seq372 311 1e-82
seq275 311 1e-82
seq284 304 2e-80
seq104 269 4e-70
seq483 113 7e-23
>seq372
Length=687
Score = 311 bits (344), Expect = 1e-82
Identities = 239/278 (86%), Gaps = 4/278 (1%)
Strand=Plus/Minus
Query 1 GTACGAGAGGAACCGCGGAATTCAGAATAATTGGTTTTTGCGGCTGTCTGACCAGGCAGT 60
|||||||||||||||| || |||||| ||||||||||||||||||||||||| |||||||
Sbjct 628 GTACGAGAGGAACCGCTGA-TTCAGA-TAATTGGTTTTTGCGGCTGTCTGACAAGGCAGT 571
Query 61 GCCGCGAAGCTACCATCTGCTGGATTATGGCTGAACGCCTCTAAGTCAGAATCCATGCCA 120
||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||
Sbjct 570 GCCGCGAAGCTACCATCTGCTGGATAATGGCTGAACGCCTCTAAGTCAGAATCCATGCCA 511
Query 121 GAACGGGGTGATTCTCTCCTGCACATCGTAGTCGGATACGAATAGGCTTCGGCCCCGAAC 180
||| | |||||| || ||| |||||||||||||||||||||||||||||||||| | |
Sbjct 510 GAAAGCGGTGATACT-TCCCACACATCGTAGTCGGATACGAATAGGCTTCGGCCCTGCAT 452
Query 181 CTTAGCAGGCCGGCAACGGGCGTCCCGCGGAAGCGCGGGGCGCTCAGCTGGCGGATTGCA 240
|||||| || ||| |||| | | | ||| || | ||| ||||| || |||||
Sbjct 451 CTTAGCTGGTTGGCGACGGCTCAGCGGTGAAAGTCCGTTGAGCT-AGCTGACGTCTTGCA 393
Query 241 ATTTCACCATGCGCAGGGATAAATCCTTTGCAGACGAC 278
|||| |||||||| ||||||||||||||||| |||||
Sbjct 392 ATTTTACCATGCGTGGGGATAAATCCTTTGCATACGAC 355
>seq275
Length=7890
Score = 311 bits (344), Expect = 1e-82
Identities = 239/278 (86%), Gaps = 4/278 (1%)
Strand=Plus/Minus
Query 1 GTACGAGAGGAACCGCGGAATTCAGAATAATTGGTTTTTGCGGCTGTCTGACCAGGCAGT 60
|||||||||||||||| || |||||| ||||||||||||||||||||||||| |||||||
Sbjct 3325 GTACGAGAGGAACCGCTGA-TTCAGA-TAATTGGTTTTTGCGGCTGTCTGACAAGGCAGT 3268
Query 61 GCCGCGAAGCTACCATCTGCTGGATTATGGCTGAACGCCTCTAAGTCAGAATCCATGCCA 120
||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||
Sbjct 3267 GCCGCGAAGCTACCATCTGCTGGATAATGGCTGAACGCCTCTAAGTCAGAATCCATGCCA 3208
Query 121 GAACGGGGTGATTCTCTCCTGCACATCGTAGTCGGATACGAATAGGCTTCGGCCCCGAAC 180
||| | |||||| || ||| |||||||||||||||||||||||||||||||||| | |
Sbjct 3207 GAAAGCGGTGATACT-TCCCACACATCGTAGTCGGATACGAATAGGCTTCGGCCCTGCAT 3149
Query 181 CTTAGCAGGCCGGCAACGGGCGTCCCGCGGAAGCGCGGGGCGCTCAGCTGGCGGATTGCA 240
|||||| || ||| |||| | | | ||| || | ||| ||||| || |||||
Sbjct 3148 CTTAGCTGGTTGGCGACGGCTCAGCGGTGAAAGTCCGTTGAGCT-AGCTGACGTCTTGCA 3090
Query 241 ATTTCACCATGCGCAGGGATAAATCCTTTGCAGACGAC 278
|||| |||||||| ||||||||||||||||| |||||
Sbjct 3089 ATTTTACCATGCGTGGGGATAAATCCTTTGCATACGAC 3052
>seq284
Length=3082
Score = 304 bits (336), Expect = 2e-80
Identities = 238/278 (86%), Gaps = 5/278 (2%)
Strand=Plus/Minus
Query 1 GTACGAGAGGAACCGCGGAATTCAGAATAATTGGTTTTTGCGGCTGTCTGACCAGGCAGT 60
|||||||||||||||| || |||||| ||||||||||| ||||||||||||| |||||||
Sbjct 1234 GTACGAGAGGAACCGCTGA-TTCAGA-TAATTGGTTTT-GCGGCTGTCTGACAAGGCAGT 1178
Query 61 GCCGCGAAGCTACCATCTGCTGGATTATGGCTGAACGCCTCTAAGTCAGAATCCATGCCA 120
||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||
Sbjct 1177 GCCGCGAAGCTACCATCTGCTGGATAATGGCTGAACGCCTCTAAGTCAGAATCCATGCCA 1118
Query 121 GAACGGGGTGATTCTCTCCTGCACATCGTAGTCGGATACGAATAGGCTTCGGCCCCGAAC 180
||| | |||||| || ||| |||||||||||||||||||||||||||||||||| | |
Sbjct 1117 GAAAGCGGTGATACT-TCCCACACATCGTAGTCGGATACGAATAGGCTTCGGCCCTGCAT 1059
Query 181 CTTAGCAGGCCGGCAACGGGCGTCCCGCGGAAGCGCGGGGCGCTCAGCTGGCGGATTGCA 240
|||||| || ||| |||| | | | ||| || | ||| ||||| || |||||
Sbjct 1058 CTTAGCTGGTTGGCGACGGCTCAGCGGTGAAAGTCCGTTGAGCT-AGCTGACGTCTTGCA 1000
Query 241 ATTTCACCATGCGCAGGGATAAATCCTTTGCAGACGAC 278
|||| |||||||| ||||||||||||||||| |||||
Sbjct 999 ATTTTACCATGCGTGGGGATAAATCCTTTGCATACGAC 962
>seq104
Length=58961
Score = 269 bits (298), Expect = 4e-70
Identities = 207/243 (85%), Gaps = 2/243 (1%)
Strand=Plus/Minus
Query 36 TTTTGCGGCTGTCTGACCAGGCAGTGCCGCGAAGCTACCATCTGCTGGATTATGGCTGAA 95
||||||||||||||||| |||||||||||||||||||||||||||||||| |||||||||
Sbjct 58957 TTTTGCGGCTGTCTGACAAGGCAGTGCCGCGAAGCTACCATCTGCTGGATAATGGCTGAA 58898
Query 96 CGCCTCTAAGTCAGAATCCATGCCAGAACGGGGTGATTCTCTCCTGCACATCGTAGTCGG 155
|||||||||||||||||||||||||||| | |||||| || ||| ||||||||||||||
Sbjct 58897 CGCCTCTAAGTCAGAATCCATGCCAGAAAGCGGTGATACT-TCCCACACATCGTAGTCGG 58839
Query 156 ATACGAATAGGCTTCGGCCCCGAACCTTAGCAGGCCGGCAACGGGCGTCCCGCGGAAGCG 215
|||||||||||||||||||| | | |||||| || ||| |||| | | | |||
Sbjct 58838 ATACGAATAGGCTTCGGCCCTGCATCTTAGCTGGTTGGCGACGGCTCAGCGGTGAAAGTC 58779
Query 216 CGGGGCGCTCAGCTGGCGGATTGCAATTTCACCATGCGCAGGGATAAATCCTTTGCAGAC 275
|| | ||| ||||| || ||||||||| |||||||| ||||||||||||||||| ||
Sbjct 58778 CGTTGAGCT-AGCTGACGTCTTGCAATTTTACCATGCGTGGGGATAAATCCTTTGCATAC 58720
Query 276 GAC 278
|||
Sbjct 58719 GAC 58717
>seq483
Length=789
Score = 113 bits (124), Expect = 7e-23
Identities = 110/139 (79%), Gaps = 2/139 (1%)
Strand=Plus/Plus
Query 141 GCACATCGTAGTCGGATACG-AATAGGCTTCGGCCCCGAACCTTAGCAGGCCGGCAACGG 199
|||||||||||||||||||| ||||||||||||||| | | |||||| || ||| ||||
Sbjct 333 GCACATCGTAGTCGGATACGKAATAGGCTTCGGCCCTGCATCTTAGCTGGTTGGCGACGG 392
Query 200 GCGTCCCGCGGAAGCGCGGGGCGCTCAGCTGGCGGATTGCAATTTCACCATGCGCAGGGA 259
| | | ||| || | ||| ||||| || ||||||||| |||||||| ||||
Sbjct 393 CTCAGCGGTGAAAGTCCGTTGAGCT-AGCTGACGTCTTGCAATTTTACCATGCGTGGGGA 451
Query 260 TAAATCCTTTGCAGACGAC 278
||||||||||||| |||||
Sbjct 452 TAAATCCTTTGCATACGAC 470
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 819195555840
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |