Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Geotrichum_20candidum_20[genbank_20GCA_5F000743665.1_202014-08-26]
560 sequences; 41,384,521 total letters
Query= NC_010671.1
Length=124279
Score E
Sequences producing significant alignments: (Bits) Value
seq73 284 1e-71
seq24 114 1e-20
>seq73
Length=484926
Score = 284 bits (314), Expect = 1e-71
Identities = 639/952 (67%), Gaps = 6/952 (1%)
Strand=Plus/Minus
Query 65991 CCACAAACTTGGGAAGGGCAAGAGATGCGAGGTTGCAGACAGCTATCTCGTCAGGAGCGG 66050
||||||| ||||||| |||| ||| || | |||||||||||| | ||| || | || |
Sbjct 51440 CCACAAAGGTGGGAAGTGCAATAGAGGCCAAGTTGCAGACAGCAACCTCATCCGCAGATG 51381
Query 66051 TATACTCGACAATTTCGGTGCACAGATTACTGCAGCGTATGGTGCCCAAATTCTGTTGAT 66110
|| |||||||| || ||||||| || || || || || |||| |||| || |
Sbjct 51380 AGTATTCGACAATCTCTGTGCACAAGTTGGAGCTACGGATAGTTCCCAGGTTCTTCTGGT 51321
Query 66111 TACTCTTGCGATTGCATGCATCCTTGTACATCATGTACGGAGTGCCGGTCTCAACTTGGG 66170
| |||||||| ||||| ||||||||||| | |||| | || | || ||||| ||| |
Sbjct 51320 TGCTCTTGCGGTTGCACGCATCCTTGTAGAGCATGAATGGGTTTCCAGTCTCGGTTTGTG 51261
Query 66171 ACTCAATGATGGCGTGCCAAAGAGCGCGTGCCTTCACCGTACGTACCGCCCTA-CCTTTG 66229
|||| ||||| | ||| || | ||||| || || | | | ||||| || | |
Sbjct 51260 CTTCAAGGATGGAATACCAGAGCTTTTGAGCCTTTACGGT-CTTTCGGCCCTTGCCCTCG 51202
Query 66230 CGTTCGTAATGTTCGTAGAGGTGTTCGAAGGATTCACCCCATACTTCGGACAGACATGGA 66289
|| || || | ||||| | ||| || || || | || || | |||| |||
Sbjct 51201 CGCTCATACTTCTCGTACAAAGCTTCAAACTCATCTCCGTAGACATCTGCTAGACCAGGA 51142
Query 66290 CACTTGTGTGGACACATCAGCGACCAATCACCATCCTGTTCTACACGACGCATAAATAGA 66349
|||| | |||||||||||| | ||| || || | | || || | ||| || |||
Sbjct 51141 CACTCATTTGGACACATCAGGGTCCACTCTCCGTTTTTCTCAACCCTCTTCATGAAGAGA 51082
Query 66350 TCAGGTATCCAGAGGGCGTAGAAGAGATCGCGTGCTCGTTGCTCCTCAATGCCGTGATTT 66409
|| || ||||| | ||| ||||||||||||||||| || ||||| | || |||||
Sbjct 51081 TCGGGAATCCACAAGGCATAGAAGAGATCGCGTGCACGAACTTCCTCCTTACCATGATTC 51022
Query 66410 TTGCGCAAGTCGAGGAACTCAAAGATGTCGGCATGCCATGGTTCCAGGTAGATGGCGAAC 66469
|| | | ||||||||||| |||| || || |||||||| || |||||||| || ||
Sbjct 51021 TTTCTGAGATCGAGGAACTCGAAGACATCAGCGTGCCATGGCTCAAGGTAGATAGCAAAG 50962
Query 66470 GAGCCCATACGTTTGCCGCCACCTTGGTCGACGTAGCGAGCGACATTGTTGAAGACACGC 66529
| || ||| ||| |||||||| || || || | || |||||||| ||||||
Sbjct 50961 GCACCAGGACGCTTGTTACCACCTTGATCAACATATCTGGCTGTGTTGTTGAAAACACGC 50902
Query 66530 AACATCGGTACGAGCCCGTTAGATTTGCCATTGGTGCCGTCGATGGGGGATCCTCGTGCC 66589
| ||| || || | || || || || ||||||||| ||| ||| || ||
Sbjct 50901 AGCATTGGCACAATACCATTCGAGAAACCGTTGGTGCCGGAAATGTAGGAGCCAGTAGCT 50842
Query 66590 CGTATATCGTGAACATTCAGACCAATACCACCGGCCGTCTTCGAGATGGCAGCACAATCG 66649
|| || ||| | ||| |||||||| |||||||| ||||||| || ||||||
Sbjct 50841 CGGATTCTGTGGATATTGAGACCAATGCCACCGGCATTCTTCGAAATCATAGCACATGTC 50782
Query 66650 GCCACTGTCCGGAATATGCCGTCAATGGAGTCACCCTTGATGGTCAGGAGGTAGCATGAA 66709
|| || | || || |||||| ||| |||| || | |||| |||||||
Sbjct 50781 TTCAGGGTATCATAGATACCATCAATGCTGTCTTCCTTCATATCTACGAGGAAGCATGAT 50722
Query 66710 CTAAGTTGGGGTTTGGGTGTGGCGGCCGAGAAGAGGGTGGGTGTAGCGTGCGTAAAGTAA 66769
| || | | || || | || |||||| || || | ||| || || |||||
Sbjct 50721 GACATCTGAGCCTGAGGGGTTCCAGCACTGAAGAGTGTAGGAGAAGCATGTGTGAAGTAC 50662
Query 66770 TGGCGAGACATGTAATTGTACGTCTCGATGACAGCATCAATGTTTTCGCCATGAATCCCG 66829
| | ||||| | ||||| |||||||| | | ||||| | ||||||||| || ||
Sbjct 50661 TTGTTCGACATCAAGTTGTATGTCTCGATTGCGGATTCAATATCTTCGCCATGGATACCA 50602
Query 66830 AGTG-CACATCGCATCAGGAGGTATTGAGGCCGTTCGACCA-GCCGATCCTTGATATGCA 66887
| | |||| ||||| | | || ||| || || || |||| | || | || | | | |
Sbjct 50601 ACAGCCACA-CGCATGATCATGTGTTGTGGGCGCTCAACCACGGCG-TTATTAAGACGGA 50544
Query 66888 TTAAGTAGGAGCGTTCCAGGGTCTTGATACCAAAGTACGAGTAATTGAAATC 66939
| ||| || || |||| ||||||| ||||| || ||| ||||||||
Sbjct 50543 GGAGGTATGAACGCTCCAATGTCTTGAATCCAAAATATTGGTAGTTGAAATC 50492
Score = 113 bits (124), Expect = 4e-20
Identities = 318/478 (67%), Gaps = 24/478 (5%)
Strand=Plus/Minus
Query 65078 TCGACCGTGAACTGGAT---CGCATTAGCAGCCGCCTTGGTCCTAAGATAGTACATGCCG 65134
||||| ||||| || || |||| | || ||| | || | ||||| |||||||||
Sbjct 52335 TCGACAGTGAATTGAATAGGCGCACTGGCGGCCA---TTGTGCGGAGATAATACATGCCG 52279
Query 65135 GTCTTGAGGCCAGCACGCCAAGCATAGAAATGCATCGATGATAATTTTGCATAAT-TCGG 65193
||||| | |||| ||| || ||||||||| || | || |||| | | ||
Sbjct 52278 GTCTTCAAGCCAAGCTTCCAGCCAGTGAAATGCATGCTTG-TGATCTTGCCCATGGTGGG 52220
Query 65194 CTCGGCCACATGCATATTCAACGACTGACTCTGATCGATGTAACGACCACGATCTGCAGC 65253
|| || || || |||| ||||| |||||| ||| || |||||| || |||||
Sbjct 52219 GTCCTTCATGTGAATGTTCATTGACTGGGACTGATCAATGAAAGCACCACGGTCAGCAGC 52160
Query 65254 CATGT---CAATGATACGACGTCCCGATATCTCCCAGACGGTCTTGTACAGGCGACGT-A 65309
||| | ||||| |||| | || |||||||||||||||||||| | | | | | |
Sbjct 52159 CATCTGCACAATGTTACGCTGA---GAAATCTCCCAGACGGTCTTGTAGA-GAGCCTTAA 52104
Query 65310 CCTCAATTGGAATCTCCTCAATGTCCTGGACTGAACCACGACGTGCAATAATGCGATTAC 65369
|| ||| || | ||| | ||||| ||||||| | || |||||||| ||
Sbjct 52103 TATCTGATGGGATGTTGGGAATATTCTGGATGGAACCACCATCAGCGATAATGCGGTTCT 52044
Query 65370 GCATCGACTCTGACCACAAACCCAAATCGATAAGAT-GTTG---AACCAAGTGACGATTG 65425
||| || ||||| | |||| ||||| ||||| ||| | ||||| | ||
Sbjct 52043 TCATGTTGTCAGACCAGAGTCCCATATCGACAAGATCCTTGAGAAGCCAAG----GGTTC 51988
Query 65426 ATGACTTGGAACTCGCCGGACAGTACACGACGGACATAGATGTTGGACGTGATGGGTTCA 65485
| || |||||||| || | || ||||| ||| || |||||||| ||| || |||
Sbjct 51987 ACCACCTGGAACTCTCCTGCAAGCACACGGCGGGAGTAAATGTTGGAGGTGTATGGCTCA 51928
Query 65486 AAGGATTCAGTGTTGCCTAGAATTTGGGCAGTAGATGCAGTTGGCATGGGAGCGACCA 65543
||| | || || || || || ||| ||| ||||||||||| ||||| ||||
Sbjct 51927 AAGCACTCGTTGAAACCAAGGATCTGGCTAGTGCTGGCAGTTGGCATAGGAGCAACCA 51870
>seq24
Length=853129
Score = 114 bits (126), Expect = 1e-20
Identities = 309/478 (65%), Gaps = 55/478 (12%)
Strand=Plus/Minus
Query 61213 GCGTTCTTTGCCGCTTCGGACGGTATCGTCAATGAGAATTTATTGGAACGTTTCGCGCAG 61272
|||||||| ||||| ||||| || |||||||| ||||| || | || ||||||
Sbjct 483910 GCGTTCTTCGCCGCCTCGGATGGCATCGTCAACGAGAACTTGGTTGAGCGTTTCAGTGGT 483851
Query 61273 GAGGTGCAAGTGTCGGAGGCGCGTTGTTTCTACGGCTTCCAGATTGCCATGGAGAATGTC 61332
|| ||||| | | ||||||||||||||||| || |||||||| |||||||| ||
Sbjct 483850 GAAGTGCAGATTCCTGAGGCGCGTTGTTTCTATGGTTTCCAGATCATGATGGAGAACATC 483791
Query 61333 CACTCGGAGATGTACAGTGTTCTCATCGATACGTACATCAGGGAGCGGGCGGAACGTGAA 61392
||||| |||| ||| | || || || ||||| ||| ||||| || |||| ||
Sbjct 483790 CACTCAGAGACATACTCCCTCCTGATTGACACGTATGTCAAGGAGCCAGCACAACG-GAC 483732
Query 61393 CGATT-GTTCAATGCCATCGAGACG--------ATACC----------GGC------GGT 61427
||| ||||||||| || || ||| ||| | ||| |||
Sbjct 483731 GTATTTGTTCAATGCTATTGATACGAGTAAGATATATCTGTCTTGAATGGCCGTTATGGT 483672
Query 61428 G---------------------------AAGCGGAAAGCGGATTGGGCCTTCAATTGGA- 61459
| ||| ||| || |||||||| | | ||||
Sbjct 483671 GCTAACCTAGAATTAAGTCCCCTGCATCAAGAAGAAGGCCGATTGGGCAGTTAGATGGAT 483612
Query 61460 TCACCAGTACAACGGCTACATTTGGTGAACGATTGCTGGCATTTGCGGTGGTCGAGGGTG 61519
||| | | || | | || || | |||| ||| | ||||| || | || || ||
Sbjct 483611 TCAAGACAAGAA-GTCCACCTTCGCCCAACGTTTGGTTGCATTCGCTGCCGTGGAAGGCA 483553
Query 61520 TATTTTTCAGTGGATCGTTTGCCGCAATCTTTTGGTTGAAGAAACGTGGACTTATGCCCG 61579
| || |||||||| || ||||| || ||||||||| ||||||| ||||| || ||| | |
Sbjct 483552 TTTTCTTCAGTGGTTCTTTTGCAGCTATCTTTTGGCTGAAGAAGCGTGGCCTCATGGCTG 483493
Query 61580 GTCTGACCTTCAGCAATGAGTTGATATCACGCGACGAGGGCATGCATTGTGATTTTGC 61637
|||||||||| || ||| | || || || ||||||||| ||||| || |||||
Sbjct 483492 GTCTGACCTTTTCGAACGAGCTCATCTCTCGTGACGAGGGCCTGCATACCGACTTTGC 483435
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 397565286598400
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |