Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Geotrichum_20fermentans_20[genbank_20GCA_5F002233575.1_202017-07-25] 3,822 sequences; 31,278,289 total letters Query= AAMG01002120.1 Length=347 Score E Sequences producing significant alignments: (Bits) Value seq18 118 2e-24 seq3656 109 1e-21 >seq18 Length=6580 Score = 118 bits (130), Expect = 2e-24 Identities = 180/253 (71%), Gaps = 4/253 (2%) Strand=Plus/Plus Query 50 TCACCGTGGTTGCCCTCGGCGTTGTTCAGGCCGAACAGGCGCTCCTTGATGATTCCATCG 109 |||||||||||||||| || | |||||||| ||||||||||||||| ||| || Sbjct 1795 TCACCGTGGTTGCCCTGCTCGCCGGTCAGGCCGTACAGGCGCTCCTTGAGGATAGGGTCT 1854 Query 110 CGCTCGTTCCACAGGGCCAGGCCCAGGCACCAACGTTGCGCCTTGTCACTGAACCCCGCC 169 |||||||||| || || | ||| ||| || || || || || | Sbjct 1855 TTGCCGTTCCACAGTGCGAGCGAGAAACACAGACGCTGGTGGTTATCGGAGATACCACCG 1914 Query 170 AGGCCGTCCTCGCCCCAACGGTAGGCGCGGCTGCGTG--CATGGTCATGGGGGAAGTAGG 227 | |||||||||||||| ||||||||||| | | || |||| || |||||| || Sbjct 1915 ATACCGTCCTCGCCCCATCGGTAGGCGCG-CGACTTGGCCATG-TCGAAGGGGAACGAGT 1972 Query 228 CCCAGGCGTCGCCATCGGCGCTGTAGTCTTCGCGCACCGTGCCCCATTGGCGTTCGCTCA 287 ||| || ||| | | |||||||||||| ||||| || |||||||||||||| || | Sbjct 1973 TCCACGCATCGTCGTTGGCGCTGTAGTCCTCGCGGACAGTGCCCCATTGGCGCTCAGAGA 2032 Query 288 GGTAGGGGCCCCA 300 |||||| ||||| Sbjct 2033 CGTAGGGACCCCA 2045 >seq3656 Length=10640 Score = 109 bits (120), Expect = 1e-21 Identities = 177/252 (70%), Gaps = 2/252 (1%) Strand=Plus/Minus Query 50 TCACCGTGGTTGCCCTCGGCGTTGTTCAGGCCGAACAGGCGCTCCTTGATGATTCCATCG 109 || |||||||| |||| || | | || ||| ||||||||||||||| ||| || || Sbjct 8834 TCGCCGTGGTTACCCTGCTCGCCGGTGAGACCGTACAGGCGCTCCTTGAGGATGCCGTCC 8775 Query 110 CGCTCGTTCCACAGGGCCAGGCCCAGGCACCAACGTTGCGCCTTGTCACTGAACCCCGCC 169 ||||||| || || ||| | |||| || || ||||| || || | Sbjct 8774 TTGCCGTTCCAGAGTGCAAGGGAGAAGCACAGGCGCTGGTGGTTGTCCGAGATACCGCCG 8715 Query 170 AGGCCGTCCTCGCCCCAACGGTAGGCGCGGCTGCGTGCATG-GTCATGGGGGAAGTAGGC 228 | |||||||| ||||| ||||||||||| | | || | ||| ||| || || Sbjct 8714 ATACCGTCCTCTCCCCACCGGTAGGCGCG-CGACTTGGACACGTCGAAGGGAAATGAGTT 8656 Query 229 CCAGGCGTCGCCATCGGCGCTGTAGTCTTCGCGCACCGTGCCCCATTGGCGTTCGCTCAG 288 ||| || ||||| | |||||||||||| ||||| || |||||||| ||||| ||| || Sbjct 8655 CCACGCATCGCCGTTGGCGCTGTAGTCCTCGCGGACAGTGCCCCACTGGCGCTCGGAGAG 8596 Query 289 GTAGGGGCCCCA 300 |||||| ||||| Sbjct 8595 GTAGGGACCCCA 8584 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1007961474240