Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Geotrichum_20fermentans_20[genbank_20GCA_5F002233575.1_202017-07-25] 3,822 sequences; 31,278,289 total letters Query= NC_010671.1 Length=124279 Score E Sequences producing significant alignments: (Bits) Value seq2414 246 2e-60 seq1321 82.4 6e-11 >seq2414 Length=19474 Score = 246 bits (272), Expect = 2e-60 Identities = 591/882 (67%), Gaps = 18/882 (2%) Strand=Plus/Minus Query 65993 ACAAACTTGGGAAGGGCAAGAGATGCGAGGTTGCAGACAGCTATCTCGTCAGGAGCGGTA 66052 ||||| |||||| |||| || || ||||||||||| || | ||||||||| | | Sbjct 2612 ACAAAGGCGGGAAGAGCAATCGAGGCAAGGTTGCAGACGGCGACCTCGTCAGGCGACGAG 2553 Query 66053 TACTCGACAATTTCGGTGCACAGATTACTGCAGCGTATGGTGCCCAAATTCTGTTGATTA 66112 ||||| | || || ||||| || || | |||||||| | | ||| || || Sbjct 2552 TACTCAATGATCTCAGTGCAGAGGTTGGACGACTTGATGGTGCCGAGGTGCTGCTGGTTC 2493 Query 66113 CTCTTGCGATTGCATGCATCCTTGTACATCATGTACGGAGTGCCGGTCTCAACTTGGGAC 66172 |||| ||| || |||||||| | |||| | ||| || |||||| || | | Sbjct 2492 GACTTGGAGTTGGCGGCGTCCTTGTAGAGCATGAAGGGACCACCAGTCTCAGTCTGAGCC 2433 Query 66173 TCAATGATGGCGTGCCAAAGAGCGCGTGCCTTCACCGTACGTACCGCCCTA-CCTTTGCG 66231 || | ||| ||| |||||| | ||||| | || | | | |||| || | || Sbjct 2432 TCGAGGATAGCGAACCAAAGCTTCTGAGCCTTGATGGT-CTTGCGACCCTTGCCCTCGCT 2374 Query 66232 TTCGTAATGTTCGTAGAGGTGTTCGAAGGATTCACCCCAT--ACTTCGGACAGACATGGA 66289 ||||| | ||||| || || ||||| | | || | || |||| || | || Sbjct 2373 CTCGTACTTCTCGTAAAGCTGCTCGAAC--TCCTCCGAGTGGACGTCGGCAAGGCCGGGG 2316 Query 66290 CACTTGTGTGGACACATCAGCGACCAATCACCATCCTGTTCTACACGACGCATAAATAGA 66349 |||| | || ||||| || | ||| || || ||| || ||||| ||| || || Sbjct 2315 CACTCGGCGGGGCACATGAGGGTCCAGTCGCCGTCCGCCTCGACACGCTTCATGAAGAGG 2256 Query 66350 TCAGGTATCCAGAGGGCGTAGAAGAGATCGCGTGCTCGTTGCTCCTCAATGCCGTGATTT 66409 || || |||||||||||||||||||| || || || || |||||| ||||||| || Sbjct 2255 TCGGGGATCCAGAGGGCGTAGAAGAGGTCACGGGCACGCATCTCCTCCTTGCCGTGGTTC 2196 Query 66410 TTGCGCAAGTCGAGGAACTCAAAGATGTCGGCATGCCATGGTTCCAGGTAGATGGCGAAC 66469 ||||| | ||||||||| || |||| |||||| ||||| || || ||||||||||| || Sbjct 2195 TTGCGGAGGTCGAGGAAGTCGAAGACGTCGGCGTGCCAAGGCTCGAGGTAGATGGCAAAG 2136 Query 66470 GAGCCCATACGTTTGCCGCCACCTTGGTCGACGTAGCGAGC---GACATTGTTGAAGACA 66526 | || || ||| ||| || ||||||||||| ||||| | ||| || | || Sbjct 2135 GCACCGGGGCGCTTGTTGCCGCCCTGGTCGACGTAACGAGCAGTGGCATCGT---ACGCA 2079 Query 66527 CGCAACATCGGTACGAGCCCGTTAGATTTGCCATTGGTGCCGTCGATGGGGGATCCTCGT 66586 || | ||| || |||| ||||| || | || ||||| ||| | ||| || || Sbjct 2078 CGGAGCATGGGAACGATACCGTTGGAGTAACCGTTGGTACCGGCAATGTACGAGCCCTTG 2019 Query 66587 GCCCGTATATCGTGAACATTCAGACCAATACCACCGGCCGTCTTCGAGATGGCAGCACA- 66645 || || || | ||| | | ||||||||||| ||||| ||||| ||||| ||| || Sbjct 2018 GCACGGATGTTGTGGATGTGGAGACCAATACCGCCGGCAGTCTTGGAGATCTGAGCGCAG 1959 Query 66646 ATC-GGCCACTGTCCGGAATATGCCGTCAATGGAGTCACCCTTGATGGTCAGGAGGTAGC 66704 || | |||| | | ||||| ||||| ||||| |||| |||| | ||| ||| Sbjct 1958 GTCTTGAGGGTGTC--GTAGATGCCATCAATCGAGTCGTCCTTCATGGCGACAAGGAAGC 1901 Query 66705 ATGAACTAAGTTGGGGTTTGGGTGTGGCGGCCGAGAAGAGGGTGGGTGTAGCGTGCGTAA 66764 | || | || | | || || | || ||||||||| || | |||||| || | Sbjct 1900 AAGATGACATCTGAGCGTGAGGAGTACCAGCGTTGAAGAGGGTAGGCGAAGCGTGGGTGA 1841 Query 66765 AGTAATGGCGAGACATGTAATTGTACGTCTCGATGACAGCATCAATGTTTTCGCCATGAA 66824 |||| | |||||| || || |||||||||||| || ||||| ||||| || | Sbjct 1840 AGTAGCGCTCCGACATGAGGTTATAGGTCTCGATGACACGGTCGATGTTGTCGCCGTGGA 1781 Query 66825 TCCCGA-GTGCACATCGCATCAGGAGGTATTGAGGCCGTTCG 66865 | |||| | |||| ||||| || | || || || || ||| Sbjct 1780 TACCGACGGACACA-CGCATAAGCATGTGCTGCGGGCGCTCG 1740 >seq1321 Length=24731 Score = 82.4 bits (90), Expect = 6e-11 Identities = 95/128 (74%), Gaps = 0/128 (0%) Strand=Plus/Plus Query 61498 GCATTTGCGGTGGTCGAGGGTGTATTTTTCAGTGGATCGTTTGCCGCAATCTTTTGGTTG 61557 || |||||| || ||||| | || ||| || || || || || ||||| ||| | Sbjct 19057 GCCTTTGCGTGTGTTGAGGGCATCTTCTTCTCGGGCTCATTCGCGGCCATCTTCTGGCTC 19116 Query 61558 AAGAAACGTGGACTTATGCCCGGTCTGACCTTCAGCAATGAGTTGATATCACGCGACGAG 61617 ||||| ||||| || |||| ||| || |||||| ||| ||| | || || ||||||||| Sbjct 19117 AAGAAGCGTGGTCTGATGCGCGGCCTCACCTTCTCCAACGAGCTCATCTCGCGCGACGAG 19176 Query 61618 GGCATGCA 61625 |||||||| Sbjct 19177 GGCATGCA 19184 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 397549481034080