Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Geotrichum_20fermentans_20[genbank_20GCA_5F002233575.1_202017-07-25]
3,822 sequences; 31,278,289 total letters
Query= NC_010671.1
Length=124279
Score E
Sequences producing significant alignments: (Bits) Value
seq2414 246 2e-60
seq1321 82.4 6e-11
>seq2414
Length=19474
Score = 246 bits (272), Expect = 2e-60
Identities = 591/882 (67%), Gaps = 18/882 (2%)
Strand=Plus/Minus
Query 65993 ACAAACTTGGGAAGGGCAAGAGATGCGAGGTTGCAGACAGCTATCTCGTCAGGAGCGGTA 66052
||||| |||||| |||| || || ||||||||||| || | ||||||||| | |
Sbjct 2612 ACAAAGGCGGGAAGAGCAATCGAGGCAAGGTTGCAGACGGCGACCTCGTCAGGCGACGAG 2553
Query 66053 TACTCGACAATTTCGGTGCACAGATTACTGCAGCGTATGGTGCCCAAATTCTGTTGATTA 66112
||||| | || || ||||| || || | |||||||| | | ||| || ||
Sbjct 2552 TACTCAATGATCTCAGTGCAGAGGTTGGACGACTTGATGGTGCCGAGGTGCTGCTGGTTC 2493
Query 66113 CTCTTGCGATTGCATGCATCCTTGTACATCATGTACGGAGTGCCGGTCTCAACTTGGGAC 66172
|||| ||| || |||||||| | |||| | ||| || |||||| || | |
Sbjct 2492 GACTTGGAGTTGGCGGCGTCCTTGTAGAGCATGAAGGGACCACCAGTCTCAGTCTGAGCC 2433
Query 66173 TCAATGATGGCGTGCCAAAGAGCGCGTGCCTTCACCGTACGTACCGCCCTA-CCTTTGCG 66231
|| | ||| ||| |||||| | ||||| | || | | | |||| || | ||
Sbjct 2432 TCGAGGATAGCGAACCAAAGCTTCTGAGCCTTGATGGT-CTTGCGACCCTTGCCCTCGCT 2374
Query 66232 TTCGTAATGTTCGTAGAGGTGTTCGAAGGATTCACCCCAT--ACTTCGGACAGACATGGA 66289
||||| | ||||| || || ||||| | | || | || |||| || | ||
Sbjct 2373 CTCGTACTTCTCGTAAAGCTGCTCGAAC--TCCTCCGAGTGGACGTCGGCAAGGCCGGGG 2316
Query 66290 CACTTGTGTGGACACATCAGCGACCAATCACCATCCTGTTCTACACGACGCATAAATAGA 66349
|||| | || ||||| || | ||| || || ||| || ||||| ||| || ||
Sbjct 2315 CACTCGGCGGGGCACATGAGGGTCCAGTCGCCGTCCGCCTCGACACGCTTCATGAAGAGG 2256
Query 66350 TCAGGTATCCAGAGGGCGTAGAAGAGATCGCGTGCTCGTTGCTCCTCAATGCCGTGATTT 66409
|| || |||||||||||||||||||| || || || || |||||| ||||||| ||
Sbjct 2255 TCGGGGATCCAGAGGGCGTAGAAGAGGTCACGGGCACGCATCTCCTCCTTGCCGTGGTTC 2196
Query 66410 TTGCGCAAGTCGAGGAACTCAAAGATGTCGGCATGCCATGGTTCCAGGTAGATGGCGAAC 66469
||||| | ||||||||| || |||| |||||| ||||| || || ||||||||||| ||
Sbjct 2195 TTGCGGAGGTCGAGGAAGTCGAAGACGTCGGCGTGCCAAGGCTCGAGGTAGATGGCAAAG 2136
Query 66470 GAGCCCATACGTTTGCCGCCACCTTGGTCGACGTAGCGAGC---GACATTGTTGAAGACA 66526
| || || ||| ||| || ||||||||||| ||||| | ||| || | ||
Sbjct 2135 GCACCGGGGCGCTTGTTGCCGCCCTGGTCGACGTAACGAGCAGTGGCATCGT---ACGCA 2079
Query 66527 CGCAACATCGGTACGAGCCCGTTAGATTTGCCATTGGTGCCGTCGATGGGGGATCCTCGT 66586
|| | ||| || |||| ||||| || | || ||||| ||| | ||| || ||
Sbjct 2078 CGGAGCATGGGAACGATACCGTTGGAGTAACCGTTGGTACCGGCAATGTACGAGCCCTTG 2019
Query 66587 GCCCGTATATCGTGAACATTCAGACCAATACCACCGGCCGTCTTCGAGATGGCAGCACA- 66645
|| || || | ||| | | ||||||||||| ||||| ||||| ||||| ||| ||
Sbjct 2018 GCACGGATGTTGTGGATGTGGAGACCAATACCGCCGGCAGTCTTGGAGATCTGAGCGCAG 1959
Query 66646 ATC-GGCCACTGTCCGGAATATGCCGTCAATGGAGTCACCCTTGATGGTCAGGAGGTAGC 66704
|| | |||| | | ||||| ||||| ||||| |||| |||| | ||| |||
Sbjct 1958 GTCTTGAGGGTGTC--GTAGATGCCATCAATCGAGTCGTCCTTCATGGCGACAAGGAAGC 1901
Query 66705 ATGAACTAAGTTGGGGTTTGGGTGTGGCGGCCGAGAAGAGGGTGGGTGTAGCGTGCGTAA 66764
| || | || | | || || | || ||||||||| || | |||||| || |
Sbjct 1900 AAGATGACATCTGAGCGTGAGGAGTACCAGCGTTGAAGAGGGTAGGCGAAGCGTGGGTGA 1841
Query 66765 AGTAATGGCGAGACATGTAATTGTACGTCTCGATGACAGCATCAATGTTTTCGCCATGAA 66824
|||| | |||||| || || |||||||||||| || ||||| ||||| || |
Sbjct 1840 AGTAGCGCTCCGACATGAGGTTATAGGTCTCGATGACACGGTCGATGTTGTCGCCGTGGA 1781
Query 66825 TCCCGA-GTGCACATCGCATCAGGAGGTATTGAGGCCGTTCG 66865
| |||| | |||| ||||| || | || || || || |||
Sbjct 1780 TACCGACGGACACA-CGCATAAGCATGTGCTGCGGGCGCTCG 1740
>seq1321
Length=24731
Score = 82.4 bits (90), Expect = 6e-11
Identities = 95/128 (74%), Gaps = 0/128 (0%)
Strand=Plus/Plus
Query 61498 GCATTTGCGGTGGTCGAGGGTGTATTTTTCAGTGGATCGTTTGCCGCAATCTTTTGGTTG 61557
|| |||||| || ||||| | || ||| || || || || || ||||| ||| |
Sbjct 19057 GCCTTTGCGTGTGTTGAGGGCATCTTCTTCTCGGGCTCATTCGCGGCCATCTTCTGGCTC 19116
Query 61558 AAGAAACGTGGACTTATGCCCGGTCTGACCTTCAGCAATGAGTTGATATCACGCGACGAG 61617
||||| ||||| || |||| ||| || |||||| ||| ||| | || || |||||||||
Sbjct 19117 AAGAAGCGTGGTCTGATGCGCGGCCTCACCTTCTCCAACGAGCTCATCTCGCGCGACGAG 19176
Query 61618 GGCATGCA 61625
||||||||
Sbjct 19177 GGCATGCA 19184
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 397549481034080
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |