Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Geotrichum_20fermentans_20[genbank_20GCA_5F002233575.1_202017-07-25]
3,822 sequences; 31,278,289 total letters
Query= NC_027867.1
Length=651523
Score E
Sequences producing significant alignments: (Bits) Value
seq1991 98.7 4e-15
seq3745 86.0 3e-11
>seq1991
Length=4792
Score = 98.7 bits (108), Expect = 4e-15
Identities = 194/283 (69%), Gaps = 8/283 (3%)
Strand=Plus/Plus
Query 89007 GACAAGGCCGTGGTCGTGGTGGACGACTCTGTCGTGCGCGGCACCACATCCAAGTTCATA 89066
|||||| | || | | || |||||||| |||| || || ||||| |||||| ||
Sbjct 3124 GACAAGACAGTTCTTCTCGTTGACGACTCCATCGTCCGTGGTACCACCTCCAAGGAGATC 3183
Query 89067 ATCGACCTC-CTTCGCAAGTCTGGCGCCACCAAGGTCTACCTCGCTTCTTGCTCTCCCCC 89125
| | | | | | ||| ||||||| |||||| | |||| || | |||||||
Sbjct 3184 GTTCAGATGGCCAAGGACGTC-GGCGCCAAGAAGGTCATCTTCGCCTCGGCCGCTCCCCC 3242
Query 89126 GATCCGTTACCCCAACGTGTACGGCATCGACATACCGTCGGCCAAGGAGCTCATTGCTTC 89185
||||| | | ||||||| |||||||| ||||| || ||| || | |||||| | || |
Sbjct 3243 CATCCGCTTCTCCAACGTCTACGGCATTGACATGCCCTCGCCCCATGAGCTCGTGGCGTA 3302
Query 89186 TGGTCG---CACCGAGCACGAGGTGGCTCTCCTCCTCGGAGCCGACCAGGTCATCTATCA 89242
|| || ||||||| ||||| ||| | | | || ||||||| |||||||| ||
Sbjct 3303 CGGCCGTACCACCGAG---GAGGTCGCTGAGCACATTGGTGCCGACCTCGTCATCTACCA 3359
Query 89243 GAGTGTCGACGACTTGCAAGCGGCCTGTCGCCAGTTCAATCCC 89285
|| |||||||| | | | || ||||||||||| |||
Sbjct 3360 GAAGCTCGACGACCTCGTCCAGTCTTGCCGCCAGTTCAACCCC 3402
>seq3745
Length=8042
Score = 86.0 bits (94), Expect = 3e-11
Identities = 88/115 (77%), Gaps = 0/115 (0%)
Strand=Plus/Minus
Query 349072 GGCGTCGAGAATCTCCTTGAGTCTGGGCATGCCCAGGGTCACGTTCTTGGCCGCGACGCC 349131
||||| || ||||||||||| | |||| || ||||| |||||| | | ||||| ||
Sbjct 1364 GGCGTTGATAATCTCCTTGATACGAGGCACACCGAGGGTGACGTTCATTGAGGCGACACC 1305
Query 349132 GGCAAAGTGGAAGGTCTGGAGGGTCAACTGCGTGAGGGGCTCGCCGATGCACTGG 349186
|| |||||||| |||| ||| |||| |||||| |||||| ||||| |||||
Sbjct 1304 AGCGAAGTGGAATGTCTTGAGCGTCATCTGCGTTCCGGGCTCACCGATCGACTGG 1250
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 2084634621663956
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |