Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Geotrichum_20fermentans_20[genbank_20GCA_5F002233575.1_202017-07-25] 3,822 sequences; 31,278,289 total letters Query= NC_027867.1 Length=651523 Score E Sequences producing significant alignments: (Bits) Value seq1991 98.7 4e-15 seq3745 86.0 3e-11 >seq1991 Length=4792 Score = 98.7 bits (108), Expect = 4e-15 Identities = 194/283 (69%), Gaps = 8/283 (3%) Strand=Plus/Plus Query 89007 GACAAGGCCGTGGTCGTGGTGGACGACTCTGTCGTGCGCGGCACCACATCCAAGTTCATA 89066 |||||| | || | | || |||||||| |||| || || ||||| |||||| || Sbjct 3124 GACAAGACAGTTCTTCTCGTTGACGACTCCATCGTCCGTGGTACCACCTCCAAGGAGATC 3183 Query 89067 ATCGACCTC-CTTCGCAAGTCTGGCGCCACCAAGGTCTACCTCGCTTCTTGCTCTCCCCC 89125 | | | | | | ||| ||||||| |||||| | |||| || | ||||||| Sbjct 3184 GTTCAGATGGCCAAGGACGTC-GGCGCCAAGAAGGTCATCTTCGCCTCGGCCGCTCCCCC 3242 Query 89126 GATCCGTTACCCCAACGTGTACGGCATCGACATACCGTCGGCCAAGGAGCTCATTGCTTC 89185 ||||| | | ||||||| |||||||| ||||| || ||| || | |||||| | || | Sbjct 3243 CATCCGCTTCTCCAACGTCTACGGCATTGACATGCCCTCGCCCCATGAGCTCGTGGCGTA 3302 Query 89186 TGGTCG---CACCGAGCACGAGGTGGCTCTCCTCCTCGGAGCCGACCAGGTCATCTATCA 89242 || || ||||||| ||||| ||| | | | || ||||||| |||||||| || Sbjct 3303 CGGCCGTACCACCGAG---GAGGTCGCTGAGCACATTGGTGCCGACCTCGTCATCTACCA 3359 Query 89243 GAGTGTCGACGACTTGCAAGCGGCCTGTCGCCAGTTCAATCCC 89285 || |||||||| | | | || ||||||||||| ||| Sbjct 3360 GAAGCTCGACGACCTCGTCCAGTCTTGCCGCCAGTTCAACCCC 3402 >seq3745 Length=8042 Score = 86.0 bits (94), Expect = 3e-11 Identities = 88/115 (77%), Gaps = 0/115 (0%) Strand=Plus/Minus Query 349072 GGCGTCGAGAATCTCCTTGAGTCTGGGCATGCCCAGGGTCACGTTCTTGGCCGCGACGCC 349131 ||||| || ||||||||||| | |||| || ||||| |||||| | | ||||| || Sbjct 1364 GGCGTTGATAATCTCCTTGATACGAGGCACACCGAGGGTGACGTTCATTGAGGCGACACC 1305 Query 349132 GGCAAAGTGGAAGGTCTGGAGGGTCAACTGCGTGAGGGGCTCGCCGATGCACTGG 349186 || |||||||| |||| ||| |||| |||||| |||||| ||||| ||||| Sbjct 1304 AGCGAAGTGGAATGTCTTGAGCGTCATCTGCGTTCCGGGCTCACCGATCGACTGG 1250 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 2084634621663956