Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Geotrichum_20fermentans_20[genbank_20GCA_5F002233575.1_202017-07-25] 3,822 sequences; 31,278,289 total letters Query= NC_032108.1 Length=589068 Score E Sequences producing significant alignments: (Bits) Value seq2906 109 2e-18 seq1572 105 3e-17 >seq2906 Length=11110 Score = 109 bits (120), Expect = 2e-18 Identities = 114/147 (78%), Gaps = 2/147 (1%) Strand=Plus/Plus Query 364424 CCAATAGTCATACGAGAGGGAATGGAGAGAGGGTTGATGATGATGTCAGGCACCATGCCG 364483 ||||||||||||||||| ||||||| | | ||||||||||||| || ||||| || || Sbjct 6640 CCAATAGTCATACGAGACGGAATGGCGTGCGGGTTGATGATGAGATCCGGCACGATACCC 6699 Query 364484 TCAGCGGTAAAGGGCATAT-CTTCGGGAGGAACGATGAGACCAATGGTTCCCTTTTGCGC 364542 || || ||||| ||||| | || | || || | | ||| ||||||||| ||||| || | Sbjct 6700 TCGGCCGTAAACGGCATGTCCTCCTGGCGGTATG-TGATACCAATGGTACCCTTCTGACC 6758 Query 364543 ATAGCGAGAAGCAAACTTGTCGCCAAT 364569 | || || ||||||||||| || || Sbjct 6759 GTGACGCGAGGCAAACTTGTCACCGAT 6785 >seq1572 Length=3233 Score = 105 bits (116), Expect = 3e-17 Identities = 113/147 (77%), Gaps = 2/147 (1%) Strand=Plus/Plus Query 364424 CCAATAGTCATACGAGAGGGAATGGAGAGAGGGTTGATGATGATGTCAGGCACCATGCCG 364483 || |||||||||||||||||||||| | | ||||||||||||| ||| ||||| || || Sbjct 2494 CCGATAGTCATACGAGAGGGAATGGCGTGCGGGTTGATGATGAGGTCCGGCACGATACCC 2553 Query 364484 TCAGCGGTAAAGGGCATAT-CTTCGGGAGGAACGATGAGACCAATGGTTCCCTTTTGCGC 364542 || || || || ||||| | || | || || | | ||| ||||||||| ||||| || | Sbjct 2554 TCGGCAGTGAACGGCATGTCCTCCTGGCGGTA-GGTGATACCAATGGTACCCTTCTGACC 2612 Query 364543 ATAGCGAGAAGCAAACTTGTCGCCAAT 364569 | || || || |||||||| || || Sbjct 2613 GTGACGCGAGGCGAACTTGTCACCGAT 2639 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1884794098291046