Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Hanseniaspora_20opuntiae_20[genbank_20GCA_5F001749795.1_202016-09- 27] 17 sequences; 8,831,957 total letters Query= AAMG01002199.1 Length=543 Score E Sequences producing significant alignments: (Bits) Value seq6 765 0.0 >seq6 Length=13997 Score = 765 bits (848), Expect = 0.0 Identities = 496/539 (92%), Gaps = 6/539 (1%) Strand=Plus/Minus Query 7 CTTTTGCTCTACAGGAGATTTCTGTTCTCCATGAGTCCCCCTTAGGACACCTGCGTTATG 66 |||||| ||||| |||||||||||||||||||||||||||||||||||| ||||||||| Sbjct 5921 CTTTTGTTCTACTGGAGATTTCTGTTCTCCATGAGTCCCCCTTAGGACATCTGCGTTATC 5862 Query 67 GTTTAACAGATGTGCCGCCCCAGCCAAACTCCCCACCTGACAATGTCATCAACCCGGATC 126 ||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||| Sbjct 5861 GTTTAACAGATGTGCCGCCCCAGCCAAACTCCCCACCTGACAATGTCTTCAACCCGGATC 5802 Query 127 GGCCCGCGAAGGACCTTAACGCCA-GAAAATGGTCGGTGAAGACCAGTTCCGCTTCATTG 185 ||||| |||||| |||| | |||| || |||| |||||||||| | |||| Sbjct 5801 AGCCCGTAAAGGACGTTAAATACTTGAAAGAGGAAAATGAATTCCAGTTCCGCATTATTG 5742 Query 186 ATTAAGTaaaaaaaCGATAAGGGTAGTGGTATTTCACTTGCGCCGAAACGGCTCCCACTT 245 | |||||||| ||||||||| ||||| ||||||||||| |||||||| |||||| ||| Sbjct 5741 AATAAGTAAAGAAACGATAAAGGTAGAGGTATTTCACTGGCGCCGAA---GCTCCCTCTT 5685 Query 246 ATTCTACACCTCTCAA-GTCATTTCACAAAGTCGGACTAGAGTCAAGCTCAACAGGGTCT 304 || ||||||| ||| | ||| ||||||| ||| ||||||||||||||||||||||||| Sbjct 5684 ATGCTACACC-CTCTATGTCTCTTCACAATGTCAAACTAGAGTCAAGCTCAACAGGGTCT 5626 Query 305 TCTTTCCCCGCTGATTCCGCCAAGCCCGTTCCCTTGGCTGTGGTTTCGCTAGATAGTAGA 364 ||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||| Sbjct 5625 TCTTTCCCCGCTGATTCTGCCAAGCCCGTTCCCTTGGCTGTGGTTTCGCTAGATAGTAGA 5566 Query 365 TAGGGACAGTGGGAATCTCGTTAATCCATTCATGCGCGTCACTAATTAGATGACGAGGCA 424 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 5565 TAGGGACAGTGGGAATCTCGTTAATCCATTCATGCGCGTCACTAATTAGATGACGAGGCA 5506 Query 425 TTTGGCTACCTTAAGAGAGTCATAGTTACTCCCGCCGTTTACCCGCGCTTGGTTGAATTT 484 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 5505 TTTGGCTACCTTAAGAGAGTCATAGTTACTCCCGCCGTTTACCCGCGCTTGGTTGAATTT 5446 Query 485 CTTCACTTTGACATTCAGAGCACTGGGCAGAAATCACATTGCGTCAACATCACTTTCTG 543 ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 5445 CTTCACTTTGACATTCAGAGCACTGGGCAGAAATCACATTGCGTCAACATCACTTTCTG 5387 Score = 733 bits (812), Expect = 0.0 Identities = 475/516 (92%), Gaps = 6/516 (1%) Strand=Plus/Minus Query 30 GTTCTCCATGAGTCCCCCTTAGGACACCTGCGTTATGGTTTAACAGATGTGCCGCCCCAG 89 |||||||||||||||||||||||||| ||||||||| ||||||||||||||||||||||| Sbjct 13997 GTTCTCCATGAGTCCCCCTTAGGACATCTGCGTTATCGTTTAACAGATGTGCCGCCCCAG 13938 Query 90 CCAAACTCCCCACCTGACAATGTCATCAACCCGGATCGGCCCGCGAAGGACCTTAACGCC 149 |||||||||||||||||||||||| |||||||||||| ||||| |||||| |||| | Sbjct 13937 CCAAACTCCCCACCTGACAATGTCTTCAACCCGGATCAGCCCGTAAAGGACGTTAAATAC 13878 Query 150 A-GAAAATGGTCGGTGAAGACCAGTTCCGCTTCATTGATTAAGTaaaaaaaCGATAAGGG 208 |||| || |||| |||||||||| | ||||| |||||||| ||||||||| || Sbjct 13877 TTGAAAGAGGAAAATGAATTCCAGTTCCGCATTATTGAATAAGTAAAGAAACGATAAAGG 13818 Query 209 TAGTGGTATTTCACTTGCGCCGAAACGGCTCCCACTTATTCTACACCTCTCAA-GTCATT 267 ||| ||||||||||| |||||||| |||||| ||||| ||||||| ||| | ||| | Sbjct 13817 TAGAGGTATTTCACTGGCGCCGAA---GCTCCCTCTTATGCTACACC-CTCTATGTCTCT 13762 Query 268 TCACAAAGTCGGACTAGAGTCAAGCTCAACAGGGTCTTCTTTCCCCGCTGATTCCGCCAA 327 |||||| ||| |||||||||||||||||||||||||||||||||||||||||| ||||| Sbjct 13761 TCACAATGTCAAACTAGAGTCAAGCTCAACAGGGTCTTCTTTCCCCGCTGATTCTGCCAA 13702 Query 328 GCCCGTTCCCTTGGCTGTGGTTTCGCTAGATAGTAGATAGGGACAGTGGGAATCTCGTTA 387 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 13701 GCCCGTTCCCTTGGCTGTGGTTTCGCTAGATAGTAGATAGGGACAGTGGGAATCTCGTTA 13642 Query 388 ATCCATTCATGCGCGTCACTAATTAGATGACGAGGCATTTGGCTACCTTAAGAGAGTCAT 447 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 13641 ATCCATTCATGCGCGTCACTAATTAGATGACGAGGCATTTGGCTACCTTAAGAGAGTCAT 13582 Query 448 AGTTACTCCCGCCGTTTACCCGCGCTTGGTTGAATTTCTTCACTTTGACATTCAGAGCAC 507 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 13581 AGTTACTCCCGCCGTTTACCCGCGCTTGGTTGAATTTCTTCACTTTGACATTCAGAGCAC 13522 Query 508 TGGGCAGAAATCACATTGCGTCAACATCACTTTCTG 543 |||||||||||||||||||||||||||||||||||| Sbjct 13521 TGGGCAGAAATCACATTGCGTCAACATCACTTTCTG 13486 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1635199722016