Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Komagataella_20pastoris_20[genbank_20GCA_5F900016395.1_202016-02-08] 159 sequences; 9,375,731 total letters Query= AAMG01000911.1 Length=280 Score E Sequences producing significant alignments: (Bits) Value seq50 253 3e-65 seq84 241 2e-61 seq108 156 7e-36 seq86 122 1e-25 >seq50 Length=4328 Score = 253 bits (280), Expect = 3e-65 Identities = 214/257 (83%), Gaps = 7/257 (3%) Strand=Plus/Minus Query 2 ACTCGGTGGCTCCGTCAGTGTAGCGCGCGTGCGGCCCAGAACATCTAAGGGCATCACAGA 61 ||||| || ||||||||||||||||||||||||||||||||| ||||||||||||||||| Sbjct 1969 ACTCGCTGCCTCCGTCAGTGTAGCGCGCGTGCGGCCCAGAACGTCTAAGGGCATCACAGA 1910 Query 62 CCTGTTATTGCCTCAAACTTCCATTGGCTGGAAGCCAATAGTCCCTCTAAGAAGCCAGCC 121 |||||||||||||| ||||| ||||| | |||| | |||| ||||||||| | || Sbjct 1909 CCTGTTATTGCCTCG--CTTCCGCTGGCTTGC-GCCAGTTGTCCTTCTAAGAAG--ATCC 1855 Query 122 ACCAACCATAGTCGATGGGGCTATTTAGCAGGTTAAGGTCTCGTTCGTTATCGGAATTAA 181 ||| | || | | ||| ||| || ||||||||||||||||||| |||||| Sbjct 1854 CCCAGCAATGCCAGGTAAC-CTAGTTAAAAGCC-AAGGTCTCGTTCGTTATCGCAATTAA 1797 Query 182 CCAGACAAATCACTCCACCAACTAAGAACGGCCATGCACCACCACCCATAGAATCAAGAA 241 ||||||||||||||||||||||||||||||||||||||||||||||| | ||||||||| Sbjct 1796 GCAGACAAATCACTCCACCAACTAAGAACGGCCATGCACCACCACCCACAAAATCAAGAA 1737 Query 242 AGAGCTATCAATCTGTC 258 || ||| ||| ||||| Sbjct 1736 AGTGCTCTCATCCTGTC 1720 >seq84 Length=502 Score = 241 bits (266), Expect = 2e-61 Identities = 204/245 (83%), Gaps = 7/245 (3%) Strand=Plus/Plus Query 14 CGTCAGTGTAGCGCGCGTGCGGCCCAGAACATCTAAGGGCATCACAGACCTGTTATTGCC 73 |||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||| Sbjct 1 CGTCAGTGTAGCGCGCGTGCGGCCCAGAACGTCTAAGGGCATCACAGACCTGTTATTGCC 60 Query 74 TCAAACTTCCATTGGCTGGAAGCCAATAGTCCCTCTAAGAAGCCAGCCACCAACCATAGT 133 || ||||| ||||| | |||| | |||| ||||||||| | || ||| | || Sbjct 61 TCG--CTTCCGCTGGCTTGC-GCCAGTTGTCCTTCTAAGAAG--ATCCCCCAGCAATGCC 115 Query 134 CGATGGGGCTATTTAGCAGGTTAAGGTCTCGTTCGTTATCGGAATTAACCAGACAAATCA 193 | | ||| ||| || ||||||||||||||||||| |||||| ||||||||||| Sbjct 116 AGGTAAC-CTAGTTAAAAGCC-AAGGTCTCGTTCGTTATCGCAATTAAGCAGACAAATCA 173 Query 194 CTCCACCAACTAAGAACGGCCATGCACCACCACCCATAGAATCAAGAAAGAGCTATCAAT 253 |||||||||||||||||||||||||||||||||||| | ||||||||||| ||| ||| Sbjct 174 CTCCACCAACTAAGAACGGCCATGCACCACCACCCACAAAATCAAGAAAGTGCTCTCATC 233 Query 254 CTGTC 258 ||||| Sbjct 234 CTGTC 238 >seq108 Length=267 Score = 156 bits (172), Expect = 7e-36 Identities = 151/188 (80%), Gaps = 7/188 (4%) Strand=Plus/Plus Query 2 ACTCGGTGGCTCCGTCAGTGTAGCGCGCGTGCGGCCCAGAACATCTAAGGGCATCACAGA 61 ||||| || ||||||||||||||||||||||||||||||||| ||||||||||||||||| Sbjct 87 ACTCGCTGCCTCCGTCAGTGTAGCGCGCGTGCGGCCCAGAACGTCTAAGGGCATCACAGA 146 Query 62 CCTGTTATTGCCTCAAACTTCCATTGGCTGGAAGCCAATAGTCCCTCTAAGAAGCCAGCC 121 |||||||||||||| ||||| ||||| | |||| | |||| ||||||||| | || Sbjct 147 CCTGTTATTGCCTC--GCTTCCGCTGGCTTG-CGCCAGTTGTCCTTCTAAGAAG--ATCC 201 Query 122 ACCAACCATAGTCGATGGGGCTATTTAGCAGGTTAAGGTCTCGTTCGTTATCGGAATTAA 181 ||| | || | | ||| ||| | | ||||||||||||||||||| |||||| Sbjct 202 CCCAGCAAT-GCCAGGTAACCTAGTTA-AAAGCCAAGGTCTCGTTCGTTATCGCAATTAA 259 Query 182 CCAGACAA 189 ||||||| Sbjct 260 GCAGACAA 267 >seq86 Length=411 Score = 122 bits (134), Expect = 1e-25 Identities = 81/89 (91%), Gaps = 2/89 (2%) Strand=Plus/Plus Query 2 ACTCGGTGGCTCCGTCAGTGTAGCGCGCGTGCGGCCCAGAACATCTAAGGGCATCACAGA 61 ||||| || ||||||||||||||||||||||||||||||||| ||||||||||||||||| Sbjct 323 ACTCGCTGCCTCCGTCAGTGTAGCGCGCGTGCGGCCCAGAACGTCTAAGGGCATCACAGA 382 Query 62 CCTGTTATTGCCTCAAACTTCCATTGGCT 90 |||||||||||||| ||||| ||||| Sbjct 383 CCTGTTATTGCCTC--GCTTCCGCTGGCT 409 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 796798772679