Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Komagataella_20pastoris_20[genbank_20GCA_5F900016395.1_202016-02-08]
159 sequences; 9,375,731 total letters
Query= AAMG01000911.1
Length=280
Score E
Sequences producing significant alignments: (Bits) Value
seq50 253 3e-65
seq84 241 2e-61
seq108 156 7e-36
seq86 122 1e-25
>seq50
Length=4328
Score = 253 bits (280), Expect = 3e-65
Identities = 214/257 (83%), Gaps = 7/257 (3%)
Strand=Plus/Minus
Query 2 ACTCGGTGGCTCCGTCAGTGTAGCGCGCGTGCGGCCCAGAACATCTAAGGGCATCACAGA 61
||||| || ||||||||||||||||||||||||||||||||| |||||||||||||||||
Sbjct 1969 ACTCGCTGCCTCCGTCAGTGTAGCGCGCGTGCGGCCCAGAACGTCTAAGGGCATCACAGA 1910
Query 62 CCTGTTATTGCCTCAAACTTCCATTGGCTGGAAGCCAATAGTCCCTCTAAGAAGCCAGCC 121
|||||||||||||| ||||| ||||| | |||| | |||| ||||||||| | ||
Sbjct 1909 CCTGTTATTGCCTCG--CTTCCGCTGGCTTGC-GCCAGTTGTCCTTCTAAGAAG--ATCC 1855
Query 122 ACCAACCATAGTCGATGGGGCTATTTAGCAGGTTAAGGTCTCGTTCGTTATCGGAATTAA 181
||| | || | | ||| ||| || ||||||||||||||||||| ||||||
Sbjct 1854 CCCAGCAATGCCAGGTAAC-CTAGTTAAAAGCC-AAGGTCTCGTTCGTTATCGCAATTAA 1797
Query 182 CCAGACAAATCACTCCACCAACTAAGAACGGCCATGCACCACCACCCATAGAATCAAGAA 241
||||||||||||||||||||||||||||||||||||||||||||||| | |||||||||
Sbjct 1796 GCAGACAAATCACTCCACCAACTAAGAACGGCCATGCACCACCACCCACAAAATCAAGAA 1737
Query 242 AGAGCTATCAATCTGTC 258
|| ||| ||| |||||
Sbjct 1736 AGTGCTCTCATCCTGTC 1720
>seq84
Length=502
Score = 241 bits (266), Expect = 2e-61
Identities = 204/245 (83%), Gaps = 7/245 (3%)
Strand=Plus/Plus
Query 14 CGTCAGTGTAGCGCGCGTGCGGCCCAGAACATCTAAGGGCATCACAGACCTGTTATTGCC 73
|||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||
Sbjct 1 CGTCAGTGTAGCGCGCGTGCGGCCCAGAACGTCTAAGGGCATCACAGACCTGTTATTGCC 60
Query 74 TCAAACTTCCATTGGCTGGAAGCCAATAGTCCCTCTAAGAAGCCAGCCACCAACCATAGT 133
|| ||||| ||||| | |||| | |||| ||||||||| | || ||| | ||
Sbjct 61 TCG--CTTCCGCTGGCTTGC-GCCAGTTGTCCTTCTAAGAAG--ATCCCCCAGCAATGCC 115
Query 134 CGATGGGGCTATTTAGCAGGTTAAGGTCTCGTTCGTTATCGGAATTAACCAGACAAATCA 193
| | ||| ||| || ||||||||||||||||||| |||||| |||||||||||
Sbjct 116 AGGTAAC-CTAGTTAAAAGCC-AAGGTCTCGTTCGTTATCGCAATTAAGCAGACAAATCA 173
Query 194 CTCCACCAACTAAGAACGGCCATGCACCACCACCCATAGAATCAAGAAAGAGCTATCAAT 253
|||||||||||||||||||||||||||||||||||| | ||||||||||| ||| |||
Sbjct 174 CTCCACCAACTAAGAACGGCCATGCACCACCACCCACAAAATCAAGAAAGTGCTCTCATC 233
Query 254 CTGTC 258
|||||
Sbjct 234 CTGTC 238
>seq108
Length=267
Score = 156 bits (172), Expect = 7e-36
Identities = 151/188 (80%), Gaps = 7/188 (4%)
Strand=Plus/Plus
Query 2 ACTCGGTGGCTCCGTCAGTGTAGCGCGCGTGCGGCCCAGAACATCTAAGGGCATCACAGA 61
||||| || ||||||||||||||||||||||||||||||||| |||||||||||||||||
Sbjct 87 ACTCGCTGCCTCCGTCAGTGTAGCGCGCGTGCGGCCCAGAACGTCTAAGGGCATCACAGA 146
Query 62 CCTGTTATTGCCTCAAACTTCCATTGGCTGGAAGCCAATAGTCCCTCTAAGAAGCCAGCC 121
|||||||||||||| ||||| ||||| | |||| | |||| ||||||||| | ||
Sbjct 147 CCTGTTATTGCCTC--GCTTCCGCTGGCTTG-CGCCAGTTGTCCTTCTAAGAAG--ATCC 201
Query 122 ACCAACCATAGTCGATGGGGCTATTTAGCAGGTTAAGGTCTCGTTCGTTATCGGAATTAA 181
||| | || | | ||| ||| | | ||||||||||||||||||| ||||||
Sbjct 202 CCCAGCAAT-GCCAGGTAACCTAGTTA-AAAGCCAAGGTCTCGTTCGTTATCGCAATTAA 259
Query 182 CCAGACAA 189
|||||||
Sbjct 260 GCAGACAA 267
>seq86
Length=411
Score = 122 bits (134), Expect = 1e-25
Identities = 81/89 (91%), Gaps = 2/89 (2%)
Strand=Plus/Plus
Query 2 ACTCGGTGGCTCCGTCAGTGTAGCGCGCGTGCGGCCCAGAACATCTAAGGGCATCACAGA 61
||||| || ||||||||||||||||||||||||||||||||| |||||||||||||||||
Sbjct 323 ACTCGCTGCCTCCGTCAGTGTAGCGCGCGTGCGGCCCAGAACGTCTAAGGGCATCACAGA 382
Query 62 CCTGTTATTGCCTCAAACTTCCATTGGCT 90
|||||||||||||| ||||| |||||
Sbjct 383 CCTGTTATTGCCTC--GCTTCCGCTGGCT 409
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 796798772679
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |