Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Komagataella_20pastoris_20[genbank_20GCA_5F900016395.1_202016-02-08] 159 sequences; 9,375,731 total letters Query= AAMG01002186.1 Length=328 Score E Sequences producing significant alignments: (Bits) Value seq50 250 5e-64 seq86 233 4e-59 seq108 179 7e-43 seq84 123 5e-26 >seq50 Length=4328 Score = 250 bits (276), Expect = 5e-64 Identities = 211/257 (82%), Gaps = 13/257 (5%) Strand=Plus/Plus Query 72 CTTCTTAGAGGGACTATCGGCTCAAGCCGATGGAAGTTTGAGGCAATAACAGGTCTGTGA 131 ||||||||| |||| | ||| |||||| ||||| ||||||||||||||||||||| Sbjct 1859 CTTCTTAGAAGGACAACTGGCGCAAGCCAGCGGAAGC--GAGGCAATAACAGGTCTGTGA 1916 Query 132 TGCCCTTAGATGTTCTGGGCCGCACGCGCGCTACACTGACAGAGCCAACGAGTTCATCAC 191 |||||||||| ||||||||||||||||||||||||||||| ||| || ||||| | Sbjct 1917 TGCCCTTAGACGTTCTGGGCCGCACGCGCGCTACACTGACGGAGGCAGCGAGT------C 1970 Query 192 CTTGGCCGGAAGGTCTGGGTAATCTTGTTAAACTCTGTCGTGCTGGGGATAGAGCATTGC 251 |||| | | | | | ||| |||| ||| |||| |||||||||||||||| || |||| Sbjct 1971 CTTGCCAGAGATGGCCGGGGAATC---TTAGACTCCGTCGTGCTGGGGATAGCGCTTTGC 2027 Query 252 AATTATTGCTCTTCAACGAGGAATGCCTAGTAAGCGCGTGTCATCAGCACGCGTTGATTA 311 || || |||||||||||||| ||||||||||||| ||||||||| |||| |||||| Sbjct 2028 AA--GAGGCGCTTCAACGAGGAATTCCTAGTAAGCGCGAGTCATCAGCTCGCGCTGATTA 2085 Query 312 CGTCCCTGCCCTTTGTA 328 ||||||||||||||||| Sbjct 2086 CGTCCCTGCCCTTTGTA 2102 >seq86 Length=411 Score = 233 bits (258), Expect = 4e-59 Identities = 194/235 (83%), Gaps = 13/235 (6%) Strand=Plus/Minus Query 94 CAAGCCGATGGAAGTTTGAGGCAATAACAGGTCTGTGATGCCCTTAGATGTTCTGGGCCG 153 |||||| ||||| ||||||||||||||||||||||||||||||| ||||||||||| Sbjct 411 CAAGCCAGCGGAAGC--GAGGCAATAACAGGTCTGTGATGCCCTTAGACGTTCTGGGCCG 354 Query 154 CACGCGCGCTACACTGACAGAGCCAACGAGTTCATCACCTTGGCCGGAAGGTCTGGGTAA 213 |||||||||||||||||| ||| || ||||| ||||| | | | | | ||| || Sbjct 353 CACGCGCGCTACACTGACGGAGGCAGCGAGT------CCTTGCCAGAGATGGCCGGGGAA 300 Query 214 TCTTGTTAAACTCTGTCGTGCTGGGGATAGAGCATTGCAATTATTGCTCTTCAACGAGGA 273 || ||| |||| |||||||||||||||| || |||||| || |||||||||||| Sbjct 299 TC---TTAGACTCCGTCGTGCTGGGGATAGCGCTTTGCAA--GAGGCGCTTCAACGAGGA 245 Query 274 ATGCCTAGTAAGCGCGTGTCATCAGCACGCGTTGATTACGTCCCTGCCCTTTGTA 328 || ||||||||||||| ||||||||| |||| ||||||||||||||||||||||| Sbjct 244 ATTCCTAGTAAGCGCGAGTCATCAGCTCGCGCTGATTACGTCCCTGCCCTTTGTA 190 >seq108 Length=267 Score = 179 bits (198), Expect = 7e-43 Identities = 167/210 (80%), Gaps = 13/210 (6%) Strand=Plus/Minus Query 72 CTTCTTAGAGGGACTATCGGCTCAAGCCGATGGAAGTTTGAGGCAATAACAGGTCTGTGA 131 ||||||||| |||| | ||| |||||| ||||| ||||||||||||||||||||| Sbjct 197 CTTCTTAGAAGGACAACTGGCGCAAGCCAGCGGAAGC--GAGGCAATAACAGGTCTGTGA 140 Query 132 TGCCCTTAGATGTTCTGGGCCGCACGCGCGCTACACTGACAGAGCCAACGAGTTCATCAC 191 |||||||||| ||||||||||||||||||||||||||||| ||| || ||||| | Sbjct 139 TGCCCTTAGACGTTCTGGGCCGCACGCGCGCTACACTGACGGAGGCAGCGAGT------C 86 Query 192 CTTGGCCGGAAGGTCTGGGTAATCTTGTTAAACTCTGTCGTGCTGGGGATAGAGCATTGC 251 |||| | | | | | ||| |||| ||| |||| |||||||||||||||| || |||| Sbjct 85 CTTGCCAGAGATGGCCGGGGAATC---TTAGACTCCGTCGTGCTGGGGATAGCGCTTTGC 29 Query 252 AATTATTGCTCTTCAACGAGGAATGCCTAG 281 || || |||||||||||||| ||||| Sbjct 28 AA--GAGGCGCTTCAACGAGGAATTCCTAG 1 >seq84 Length=502 Score = 123 bits (136), Expect = 5e-26 Identities = 88/100 (88%), Gaps = 2/100 (2%) Strand=Plus/Minus Query 72 CTTCTTAGAGGGACTATCGGCTCAAGCCGATGGAAGTTTGAGGCAATAACAGGTCTGTGA 131 ||||||||| |||| | ||| |||||| ||||| ||||||||||||||||||||| Sbjct 99 CTTCTTAGAAGGACAACTGGCGCAAGCCAGCGGAAGC--GAGGCAATAACAGGTCTGTGA 42 Query 132 TGCCCTTAGATGTTCTGGGCCGCACGCGCGCTACACTGAC 171 |||||||||| ||||||||||||||||||||||||||||| Sbjct 41 TGCCCTTAGACGTTCTGGGCCGCACGCGCGCTACACTGAC 2 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 947198493952