Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Komagataella_20phaffii_20[genbank_20GCA_5F001708085.1_202016-08-12] 7 sequences; 9,397,609 total letters Query= AAMG01000911.1 Length=280 Score E Sequences producing significant alignments: (Bits) Value seq7 253 3e-65 seq1 253 3e-65 seq3 246 5e-63 seq6 232 1e-58 >seq7 Length=11027 Score = 253 bits (280), Expect = 3e-65 Identities = 214/257 (83%), Gaps = 7/257 (3%) Strand=Plus/Plus Query 2 ACTCGGTGGCTCCGTCAGTGTAGCGCGCGTGCGGCCCAGAACATCTAAGGGCATCACAGA 61 ||||| || ||||||||||||||||||||||||||||||||| ||||||||||||||||| Sbjct 3891 ACTCGCTGCCTCCGTCAGTGTAGCGCGCGTGCGGCCCAGAACGTCTAAGGGCATCACAGA 3950 Query 62 CCTGTTATTGCCTCAAACTTCCATTGGCTGGAAGCCAATAGTCCCTCTAAGAAGCCAGCC 121 |||||||||||||| ||||| ||||| | |||| | |||| ||||||||| | || Sbjct 3951 CCTGTTATTGCCTCG--CTTCCGCTGGCTTGC-GCCAGTTGTCCTTCTAAGAAG--ATCC 4005 Query 122 ACCAACCATAGTCGATGGGGCTATTTAGCAGGTTAAGGTCTCGTTCGTTATCGGAATTAA 181 ||| | || | | ||| ||| || ||||||||||||||||||| |||||| Sbjct 4006 CCCAGCAATGCCAGGTAAC-CTAGTTAAAAGCC-AAGGTCTCGTTCGTTATCGCAATTAA 4063 Query 182 CCAGACAAATCACTCCACCAACTAAGAACGGCCATGCACCACCACCCATAGAATCAAGAA 241 ||||||||||||||||||||||||||||||||||||||||||||||| | ||||||||| Sbjct 4064 GCAGACAAATCACTCCACCAACTAAGAACGGCCATGCACCACCACCCACAAAATCAAGAA 4123 Query 242 AGAGCTATCAATCTGTC 258 || ||| ||| ||||| Sbjct 4124 AGTGCTCTCATCCTGTC 4140 Score = 136 bits (150), Expect = 6e-30 Identities = 100/114 (88%), Gaps = 3/114 (3%) Strand=Plus/Plus Query 2 ACTCGGTGGCTCCGTCAGTGTAGCGCGCGTGCGGCCCAGAACATCTAAGGGCATCACAGA 61 ||||| || ||||||||||||||||||||||||||||||||| ||||||||||||||||| Sbjct 10910 ACTCGCTGCCTCCGTCAGTGTAGCGCGCGTGCGGCCCAGAACGTCTAAGGGCATCACAGA 10969 Query 62 CCTGTTATTGCCTCAAACTTCCATTGGCTGGAAGCCAATAGTCCCTCTAAGAAG 115 |||||||||||||| ||||| ||||| | |||| | |||| ||||||||| Sbjct 10970 CCTGTTATTGCCTC--GCTTCCGCTGGCTTG-CGCCAGTTGTCCTTCTAAGAAG 11020 >seq1 Length=2891404 Score = 253 bits (280), Expect = 3e-65 Identities = 214/257 (83%), Gaps = 7/257 (3%) Strand=Plus/Plus Query 2 ACTCGGTGGCTCCGTCAGTGTAGCGCGCGTGCGGCCCAGAACATCTAAGGGCATCACAGA 61 ||||| || ||||||||||||||||||||||||||||||||| ||||||||||||||||| Sbjct 2890864 ACTCGCTGCCTCCGTCAGTGTAGCGCGCGTGCGGCCCAGAACGTCTAAGGGCATCACAGA 2890923 Query 62 CCTGTTATTGCCTCAAACTTCCATTGGCTGGAAGCCAATAGTCCCTCTAAGAAGCCAGCC 121 |||||||||||||| ||||| ||||| | |||| | |||| ||||||||| | || Sbjct 2890924 CCTGTTATTGCCTCG--CTTCCGCTGGCTTGC-GCCAGTTGTCCTTCTAAGAAG--ATCC 2890978 Query 122 ACCAACCATAGTCGATGGGGCTATTTAGCAGGTTAAGGTCTCGTTCGTTATCGGAATTAA 181 ||| | || | | ||| ||| || ||||||||||||||||||| |||||| Sbjct 2890979 CCCAGCAATGCCAGGTAAC-CTAGTTAAAAGCC-AAGGTCTCGTTCGTTATCGCAATTAA 2891036 Query 182 CCAGACAAATCACTCCACCAACTAAGAACGGCCATGCACCACCACCCATAGAATCAAGAA 241 ||||||||||||||||||||||||||||||||||||||||||||||| | ||||||||| Sbjct 2891037 GCAGACAAATCACTCCACCAACTAAGAACGGCCATGCACCACCACCCACAAAATCAAGAA 2891096 Query 242 AGAGCTATCAATCTGTC 258 || ||| ||| ||||| Sbjct 2891097 AGTGCTCTCATCCTGTC 2891113 >seq3 Length=2260675 Score = 246 bits (272), Expect = 5e-63 Identities = 213/257 (83%), Gaps = 8/257 (3%) Strand=Plus/Minus Query 2 ACTCGGTGGCTCCGTCAGTGTAGCGCGCGTGCGGCCCAGAACATCTAAGGGCATCACAGA 61 ||||| || ||||||||||||||||||||||||||||||||| ||||||| ||||||||| Sbjct 1824 ACTCGCTGCCTCCGTCAGTGTAGCGCGCGTGCGGCCCAGAACGTCTAAGG-CATCACAGA 1766 Query 62 CCTGTTATTGCCTCAAACTTCCATTGGCTGGAAGCCAATAGTCCCTCTAAGAAGCCAGCC 121 |||||||||||||| ||||| ||||| | |||| | |||| ||||||||| | || Sbjct 1765 CCTGTTATTGCCTCG--CTTCCGCTGGCTTGC-GCCAGTTGTCCTTCTAAGAAG--ATCC 1711 Query 122 ACCAACCATAGTCGATGGGGCTATTTAGCAGGTTAAGGTCTCGTTCGTTATCGGAATTAA 181 ||| | || | | ||| ||| || ||||||||||||||||||| |||||| Sbjct 1710 CCCAGCAATGCCAGGTAAC-CTAGTTAAAAGCC-AAGGTCTCGTTCGTTATCGCAATTAA 1653 Query 182 CCAGACAAATCACTCCACCAACTAAGAACGGCCATGCACCACCACCCATAGAATCAAGAA 241 ||||||||||||||||||||||||||||||||||||||||||||||| | ||||||||| Sbjct 1652 GCAGACAAATCACTCCACCAACTAAGAACGGCCATGCACCACCACCCACAAAATCAAGAA 1593 Query 242 AGAGCTATCAATCTGTC 258 || ||| ||| ||||| Sbjct 1592 AGTGCTCTCATCCTGTC 1576 >seq6 Length=11416 Score = 232 bits (256), Expect = 1e-58 Identities = 210/257 (82%), Gaps = 12/257 (5%) Strand=Plus/Plus Query 2 ACTCGGTGGCTCCGTCAGTGTAGCGCGCGTGCGGCCCAGAACATCTAAGGGCATCACAGA 61 ||||| || |||||||||||||||||||| ||||||||||| ||||||||||||||||| Sbjct 6535 ACTCGCTGCCTCCGTCAGTGTAGCGCGCG--CGGCCCAGAACGTCTAAGGGCATCACAGA 6592 Query 62 CCTGTTATTGCCTCAAACTTCCATTGGCTGGAAGCCAATAGTCCCTCTAAGAAGCCAGCC 121 |||||||||||||| ||||| ||||| | |||| | |||| ||||||||| | || Sbjct 6593 CCTGTTATTGCCTCG--CTTCCGCTGGCTTGC-GCCAGTTGTCCTTCTAAGAAG--ATCC 6647 Query 122 ACCAACCATAGTCGATGGGGCTATTTAGCAGGTTAAGGTCTCGTTCGTTATCGGAATTAA 181 ||| | || | | ||| ||| | | ||||||||||||||||||| |||||| Sbjct 6648 CCCAGCAATGCCAGGTAAC-CTAGTTA--AAGCCAAGGTCTCGTTCGTTATCGCAATTAA 6704 Query 182 CCAGACAAATCACTCCACCAACTAAGAACGGCCATGCACCACCACCCATAGAATCAAGAA 241 |||||||||||||||||||||||||||||||||||||| ||||||| | ||||||||| Sbjct 6705 GCAGACAAATCACTCCACCAACTAAGAACGGCCATGCAC--CCACCCACAAAATCAAGAA 6762 Query 242 AGAGCTATCAATCTGTC 258 || ||| ||| ||||| Sbjct 6763 AGTGCTCTCATCCTGTC 6779 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 796799945967