Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Nakazawaea_20peltata_20[genbank_20GCA_5F001599355.1_202016-03-01]
11 sequences; 11,653,826 total letters
Query= NC_010671.1
Length=124279
Score E
Sequences producing significant alignments: (Bits) Value
seq4 221 1e-52
seq1 131 1e-25
>seq4
Length=1221263
Score = 221 bits (244), Expect = 1e-52
Identities = 389/557 (70%), Gaps = 15/557 (3%)
Strand=Plus/Minus
Query 61057 TTCGTATTGTTCCCCATCGAGTATGAGGATATTTGGCGCATGTACAAAAAGGCGGAAGCT 61116
||||| |||||||| ||| |||| | || || |||| |||||||| ||||| || |||
Sbjct 1137780 TTCGTCTTGTTCCCAATCAAGTACCACGAAATCTGGCAAATGTACAAGAAGGCCGAGGCT 1137721
Query 61117 TCCTTCTGGACGGTGGAGGAGGTCGATTTGTCCAAAGACATGAATGACTGGGAGC----G 61172
|| |||||||| | |||||| | || || || || || | ||||||| || |
Sbjct 1137720 TCTTTCTGGACCGCCGAGGAGATTGACTTAAGTAAGGATATCATTGACTGGAAGACCAAG 1137661
Query 61173 TTTATCGAGCGGTGAACAACATTTCAT-TAAACATGTGTTGGCGTTCTTTGCCGCTTCGG 61231
|| | ||| | || | ||||||| | | | || ||||| ||||| ||||| || |
Sbjct 1137660 TTGAACGA-CAACGAGAGATATTTCATCTCCAGA-GTTTTGGCCTTCTTCGCCGCCTCTG 1137603
Query 61232 ACGGTATCGTCAATGAGAATTTA-TTG-GAACGTTTCGCGCAGGAGGTGCAAGTGTCGGA 61289
||||||| ||||| ||||| || ||| |||| | || | ||||| ||| | | ||
Sbjct 1137602 ACGGTATTGTCAACGAGAACTTGGTTGAGAACTTCTCTGCC--GAGGTTCAACTTCCTGA 1137545
Query 61290 GGCGCGTTGTTTCTACGGCTTCCAGATTGCCATGGAGAATGTCCACTCGGAGATGTACAG 61349
| ||||||||||| ||||| ||| |||||||| ||||||| |||| |||
Sbjct 1137544 ACTGAAGTGTTTCTACGGTTTCCAAATTATGATGGAGAACATCCACTCTGAGACTTACTC 1137485
Query 61350 TGTTCTCATCGATACGTACATCAGGGAGCGGGCGGAACGTGAACGATTGTTCAATGCCAT 61409
| | | || || || ||||||| ||| | |||| ||| ||||||||||||||
Sbjct 1137484 TTTGTTGATTGACACCTACATCAAGGATCCAAAGGAAGCTGACTTCTTGTTCAATGCCAT 1137425
Query 61410 CGAGACGATACCGGCGGTGAAGCGGAAAGCGGATTGGGCCTTCAATTGGATCACCAGTAC 61469
|||||| || || | ||| ||| || || ||||| || | ||||||| | ||
Sbjct 1137424 CGAGACTATTCCATGTATCAAGGAGAAGGCCGACTGGGCTTTGAGATGGATCA--ATGAC 1137367
Query 61470 AACG--GCTACATTTGGTGAACGATTGCTGGCATTTGCGGTGGTCGAGGGTGTATTTTTC 61527
|| | ||| || ||||| ||||| | || ||||| | || || ||| | || |||
Sbjct 1137366 AAGGACGCTTTGTTCGGTGAGAGATTGGTTGCCTTTGCTGCCGTTGAAGGTATCTTCTTC 1137307
Query 61528 AGTGGATCGTTTGCCGCAATCTTTTGGTTGAAGAAACGTGGACTTATGCCCGGTCTGACC 61587
||||| || ||||| | ||||| ||||||||||| | || | ||||| ||| |||||
Sbjct 1137306 AGTGGTTCCTTTGCTTCTATCTTCTGGTTGAAGAAGAGAGGTTTAATGCCAGGTTTGACC 1137247
Query 61588 TTCAGCAATGAGTTGAT 61604
||| || ||||||||
Sbjct 1137246 TTCTCTAACGAGTTGAT 1137230
>seq1
Length=2934271
Score = 131 bits (144), Expect = 1e-25
Identities = 413/636 (65%), Gaps = 12/636 (2%)
Strand=Plus/Minus
Query 66007 GGCAAGAGATGCGAGGTTGCAGACAGCTATCTCGTCAGGAGCGGTATACTCGACAATTTC 66066
||||| ||| || | ||| || || ||| | || ||||| | | ||| |||||||| ||
Sbjct 86086 GGCAATAGAGGCCAAGTTACAAACGGCTGTTTCTTCAGGGTCAGAATATTCGACAATCTC 86027
Query 66067 GGTGCACAGATTACTGCAGCGT--ATGGTGCCCAAATTCTGTTGATTACTCTTGCGATTG 66124
|||| ||| | || | || | ||||| |||| ||| || |||| ||
Sbjct 86026 ACAACACAAGTTA--GAAGACTTGATAATACCCAAGTTCTTTTGGTTGGTCTTCTTGTTA 85969
Query 66125 CATGCATCCTTGTACATCATGTACGGAGTGCCGGTCTCAACTTGGGACTCAATGATGGCG 66184
|| ||||| ||||||| |||| | ||||| ||||||||| ||| | ||| | |||| |
Sbjct 85968 CAAGCATCTTTGTACAACATGAATGGAGTACCGGTCTCAGTTTGAGCCTCCAAAATGGAG 85909
Query 66185 TGCCAAAGAGCGCGTGCCTTCACCGTACGT--ACCGC--CCTACCTTTGCGTTCGTAATG 66240
| ||| | | ||||| || || || ||| | ||| | || ||||| |
Sbjct 85908 TACCACAATTTCTGGGCCTTGACAGTTTGTCTACCACGGCCTTCTTTC----TCGTATTT 85853
Query 66241 TTCGTAGAGGTGTTCGAAGGATTCACCCCATACTTCGGACAGACATGGACACTTGTGTGG 66300
||||| | ||| ||||| | || |||| | || |||| | | |||
Sbjct 85852 CTCGTACAAAGCAATGAACTCATCACCGTAAACCTCGGCTAAACCTGGAGCTTCATTTGG 85793
Query 66301 ACACATCAGCGACCAATCACCATCCTGTTCTACACGACGCATAAATAGATCAGGTATCCA 66360
| | | || | |||||| | || ||| || | |||| || | ||| || |||||
Sbjct 85792 AGAGAACAAGGTCCAATCTTGGTTCTTTTCGACTCTTTGCATGAACAAATCTGGGATCCA 85733
Query 66361 GAGGGCGTAGAAGAGATCGCGTGCTCGTTGCTCCTCAATGCCGTGATTTTTGCGCAAGTC 66420
| || ||| | ||| | |||| || || | |||||||| || | | |||
Sbjct 85732 TAAAGCTGGGAACAAATCTCTGGCTCTAATTTCTTCCTTACCGTGATTCTTTCTGATGTC 85673
Query 66421 GAGGAACTCAAAGATGTCGGCATGCCATGGTTCCAGGTAGATGGCGAACGAGCCCATACG 66480
| ||| || |||||||||||||||||||| || | ||| | ||| || | || |
Sbjct 85672 AATGAAGTCGAAGATGTCGGCATGCCATGGCTCAATGTACAAGGCAAAGGCACCTGGTCT 85613
Query 66481 TTTGCCGCCACCTTGGTCGACGTAGCGAGCGACATTGTTGAAGACACGCAACATCGGTAC 66540
||| ||||||||||||||||| ||||| ||||||||||| | | ||| || |
Sbjct 85612 CTTGTTACCACCTTGGTCGACGTAACGAGCAGTGTTGTTGAAGACTCTAACCATTGGAAT 85553
Query 66541 GAGCCCGTTAGATTTGCCATTGGTGCCGTCGATGGGGGATCCTCGTGCCCGTATATCGTG 66600
| ||||| || | || || || ||| | ||| || || || | || | |||
Sbjct 85552 AATACCGTTGGAAGTACCGTTAGTACCGGCAATGTAAGAACCAGTGGCTCTAATGTTGTG 85493
Query 66601 AACATTCAGACCAATACCACCGGCCGTCTTCGAGAT 66636
| || || ||||||||||||||| ||||| || ||
Sbjct 85492 GATATGCAAACCAATACCACCGGCAGTCTTGGAAAT 85457
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 397567946701040
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |