Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Nakazawaea_20peltata_20[genbank_20GCA_5F001599355.1_202016-03-01] 11 sequences; 11,653,826 total letters Query= NC_010671.1 Length=124279 Score E Sequences producing significant alignments: (Bits) Value seq4 221 1e-52 seq1 131 1e-25 >seq4 Length=1221263 Score = 221 bits (244), Expect = 1e-52 Identities = 389/557 (70%), Gaps = 15/557 (3%) Strand=Plus/Minus Query 61057 TTCGTATTGTTCCCCATCGAGTATGAGGATATTTGGCGCATGTACAAAAAGGCGGAAGCT 61116 ||||| |||||||| ||| |||| | || || |||| |||||||| ||||| || ||| Sbjct 1137780 TTCGTCTTGTTCCCAATCAAGTACCACGAAATCTGGCAAATGTACAAGAAGGCCGAGGCT 1137721 Query 61117 TCCTTCTGGACGGTGGAGGAGGTCGATTTGTCCAAAGACATGAATGACTGGGAGC----G 61172 || |||||||| | |||||| | || || || || || | ||||||| || | Sbjct 1137720 TCTTTCTGGACCGCCGAGGAGATTGACTTAAGTAAGGATATCATTGACTGGAAGACCAAG 1137661 Query 61173 TTTATCGAGCGGTGAACAACATTTCAT-TAAACATGTGTTGGCGTTCTTTGCCGCTTCGG 61231 || | ||| | || | ||||||| | | | || ||||| ||||| ||||| || | Sbjct 1137660 TTGAACGA-CAACGAGAGATATTTCATCTCCAGA-GTTTTGGCCTTCTTCGCCGCCTCTG 1137603 Query 61232 ACGGTATCGTCAATGAGAATTTA-TTG-GAACGTTTCGCGCAGGAGGTGCAAGTGTCGGA 61289 ||||||| ||||| ||||| || ||| |||| | || | ||||| ||| | | || Sbjct 1137602 ACGGTATTGTCAACGAGAACTTGGTTGAGAACTTCTCTGCC--GAGGTTCAACTTCCTGA 1137545 Query 61290 GGCGCGTTGTTTCTACGGCTTCCAGATTGCCATGGAGAATGTCCACTCGGAGATGTACAG 61349 | ||||||||||| ||||| ||| |||||||| ||||||| |||| ||| Sbjct 1137544 ACTGAAGTGTTTCTACGGTTTCCAAATTATGATGGAGAACATCCACTCTGAGACTTACTC 1137485 Query 61350 TGTTCTCATCGATACGTACATCAGGGAGCGGGCGGAACGTGAACGATTGTTCAATGCCAT 61409 | | | || || || ||||||| ||| | |||| ||| |||||||||||||| Sbjct 1137484 TTTGTTGATTGACACCTACATCAAGGATCCAAAGGAAGCTGACTTCTTGTTCAATGCCAT 1137425 Query 61410 CGAGACGATACCGGCGGTGAAGCGGAAAGCGGATTGGGCCTTCAATTGGATCACCAGTAC 61469 |||||| || || | ||| ||| || || ||||| || | ||||||| | || Sbjct 1137424 CGAGACTATTCCATGTATCAAGGAGAAGGCCGACTGGGCTTTGAGATGGATCA--ATGAC 1137367 Query 61470 AACG--GCTACATTTGGTGAACGATTGCTGGCATTTGCGGTGGTCGAGGGTGTATTTTTC 61527 || | ||| || ||||| ||||| | || ||||| | || || ||| | || ||| Sbjct 1137366 AAGGACGCTTTGTTCGGTGAGAGATTGGTTGCCTTTGCTGCCGTTGAAGGTATCTTCTTC 1137307 Query 61528 AGTGGATCGTTTGCCGCAATCTTTTGGTTGAAGAAACGTGGACTTATGCCCGGTCTGACC 61587 ||||| || ||||| | ||||| ||||||||||| | || | ||||| ||| ||||| Sbjct 1137306 AGTGGTTCCTTTGCTTCTATCTTCTGGTTGAAGAAGAGAGGTTTAATGCCAGGTTTGACC 1137247 Query 61588 TTCAGCAATGAGTTGAT 61604 ||| || |||||||| Sbjct 1137246 TTCTCTAACGAGTTGAT 1137230 >seq1 Length=2934271 Score = 131 bits (144), Expect = 1e-25 Identities = 413/636 (65%), Gaps = 12/636 (2%) Strand=Plus/Minus Query 66007 GGCAAGAGATGCGAGGTTGCAGACAGCTATCTCGTCAGGAGCGGTATACTCGACAATTTC 66066 ||||| ||| || | ||| || || ||| | || ||||| | | ||| |||||||| || Sbjct 86086 GGCAATAGAGGCCAAGTTACAAACGGCTGTTTCTTCAGGGTCAGAATATTCGACAATCTC 86027 Query 66067 GGTGCACAGATTACTGCAGCGT--ATGGTGCCCAAATTCTGTTGATTACTCTTGCGATTG 66124 |||| ||| | || | || | ||||| |||| ||| || |||| || Sbjct 86026 ACAACACAAGTTA--GAAGACTTGATAATACCCAAGTTCTTTTGGTTGGTCTTCTTGTTA 85969 Query 66125 CATGCATCCTTGTACATCATGTACGGAGTGCCGGTCTCAACTTGGGACTCAATGATGGCG 66184 || ||||| ||||||| |||| | ||||| ||||||||| ||| | ||| | |||| | Sbjct 85968 CAAGCATCTTTGTACAACATGAATGGAGTACCGGTCTCAGTTTGAGCCTCCAAAATGGAG 85909 Query 66185 TGCCAAAGAGCGCGTGCCTTCACCGTACGT--ACCGC--CCTACCTTTGCGTTCGTAATG 66240 | ||| | | ||||| || || || ||| | ||| | || ||||| | Sbjct 85908 TACCACAATTTCTGGGCCTTGACAGTTTGTCTACCACGGCCTTCTTTC----TCGTATTT 85853 Query 66241 TTCGTAGAGGTGTTCGAAGGATTCACCCCATACTTCGGACAGACATGGACACTTGTGTGG 66300 ||||| | ||| ||||| | || |||| | || |||| | | ||| Sbjct 85852 CTCGTACAAAGCAATGAACTCATCACCGTAAACCTCGGCTAAACCTGGAGCTTCATTTGG 85793 Query 66301 ACACATCAGCGACCAATCACCATCCTGTTCTACACGACGCATAAATAGATCAGGTATCCA 66360 | | | || | |||||| | || ||| || | |||| || | ||| || ||||| Sbjct 85792 AGAGAACAAGGTCCAATCTTGGTTCTTTTCGACTCTTTGCATGAACAAATCTGGGATCCA 85733 Query 66361 GAGGGCGTAGAAGAGATCGCGTGCTCGTTGCTCCTCAATGCCGTGATTTTTGCGCAAGTC 66420 | || ||| | ||| | |||| || || | |||||||| || | | ||| Sbjct 85732 TAAAGCTGGGAACAAATCTCTGGCTCTAATTTCTTCCTTACCGTGATTCTTTCTGATGTC 85673 Query 66421 GAGGAACTCAAAGATGTCGGCATGCCATGGTTCCAGGTAGATGGCGAACGAGCCCATACG 66480 | ||| || |||||||||||||||||||| || | ||| | ||| || | || | Sbjct 85672 AATGAAGTCGAAGATGTCGGCATGCCATGGCTCAATGTACAAGGCAAAGGCACCTGGTCT 85613 Query 66481 TTTGCCGCCACCTTGGTCGACGTAGCGAGCGACATTGTTGAAGACACGCAACATCGGTAC 66540 ||| ||||||||||||||||| ||||| ||||||||||| | | ||| || | Sbjct 85612 CTTGTTACCACCTTGGTCGACGTAACGAGCAGTGTTGTTGAAGACTCTAACCATTGGAAT 85553 Query 66541 GAGCCCGTTAGATTTGCCATTGGTGCCGTCGATGGGGGATCCTCGTGCCCGTATATCGTG 66600 | ||||| || | || || || ||| | ||| || || || | || | ||| Sbjct 85552 AATACCGTTGGAAGTACCGTTAGTACCGGCAATGTAAGAACCAGTGGCTCTAATGTTGTG 85493 Query 66601 AACATTCAGACCAATACCACCGGCCGTCTTCGAGAT 66636 | || || ||||||||||||||| ||||| || || Sbjct 85492 GATATGCAAACCAATACCACCGGCAGTCTTGGAAAT 85457 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 397567946701040