Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Saccharomyces_20cerevisiae_20[genbank_20GCA_5F001671685.1_202016-06- 20] 17 sequences; 12,118,824 total letters Query= AAMG01000304.1 Length=683 Score E Sequences producing significant alignments: (Bits) Value seq12 396 1e-107 >seq12 Length=1076869 Score = 396 bits (438), Expect = 1e-107 Identities = 414/542 (76%), Gaps = 15/542 (3%) Strand=Plus/Minus Query 87 TCTAAAGCTAAATATTGGCCAGAGACCGATAGCGCACAAGTAGAGTGATCGAAAGATGAA 146 ||||| ||||||||||||| ||||| |||||||| ||||| | |||||| |||||||||| Sbjct 463076 TCTAANGCTAAATATTGGCGAGAGANCGATAGCGAACAAGNACAGTGATGGAAAGATGAA 463017 Query 147 AAGCACTTTGGAAAGAGAGTTAAAAAGCACGTGAAATTGTTGAAAGGGAAGCGCTTGCAA 206 ||| |||||| |||||||| |||||| ||||||||||||||||||||||| || | | Sbjct 463016 AAGAACTTTGAAAAGAGAGNGAAAAAGTACGTGAAATTGTTGAAAGGGAAGGGCATTTGA 462957 Query 207 CCAGACTTGCCCGCAGTTGCTCAACCGGCCCCTCGGCCG--GTGCACTCTTCTGCGGTCA 264 ||||| || ||| | | || ||| | | | | | ||| | ||| Sbjct 462956 TCAGACATGGTGTTTTGTGCCCT--CTGCTCCTTGTGGGTAGGGGAATCT-CGCATTTCA 462900 Query 265 ---GGCCAGCATCAGCTCGGGCGGTCGGATAAAGGCCCCGGGAATGTGGCCCCCTTCGGG 321 |||||||||||| | || || ||||||| || ||||||| || | |||| Sbjct 462899 CTGGGCCAGCATCAGTTTTGGTGGCAGGATAAAT-CCATAGGAATGTAGCTTGCCTCGGT 462841 Query 322 GGGTGTTATAGCCCGGGGTGGAATGCGGCCCGCCTGGACTGAGGTCCGCGC--TCCGGCT 379 || |||||||| | || |||| | ||| || ||||||||| | ||| | | | Sbjct 462840 AAGTATTATAGCCTGTGG--GAATACTGCCAGCTGGGACTGAGGACTGCGACGTAAGTCA 462783 Query 380 AGGATGCTGGCGTAATGGTTGTAAGCGGCCCGTCTTGGAACACGGACCAAGGAGTCTAAC 439 ||||||||||| |||||||| || || |||||||||| |||||||||||||||||||||| Sbjct 462782 AGGATGCTGGCATAATGGTTATATGCCGCCCGTCTTGAAACACGGACCAAGGAGTCTAAC 462723 Query 440 ATCTATGCGAGTGTTTGGGTGTCAAACCCGTGCGCGTAATGAAAGTGAACGGAGG-TGGG 498 |||||||||||||||||| || |||||| | ||||||||||||||||||| ||| |||| Sbjct 462722 GTCTATGCGAGTGTTTGGGNGTAAAACCCATACGCGTAATGAAAGTGAACGTAGGTTGGG 462663 Query 499 AACCCGTGAG-GGTGCACCATCGACCGATCCTGATGTCTTCGGATGGATTTGAGTAAGAG 557 | || || || |||| |||||||| ||||| || |||| ||||| |||||||| Sbjct 462662 GCCTCGCAAGAGGNGCACAATCGACCGNNCCTGANGTNTTCGNNTGGATNTGAGTAAGNN 462603 Query 558 CATAGCTGTTGGGACCCGAAAGATGGTGAACTATGCCTGAATAGGGTGAAGCCAGAGGAA 617 ||| ||||||||||||||||| |||| ||||| ||||||||| ||| ||||| ||| | Sbjct 462602 CATNGCTGTTGGGACCCGAAANATGGNGAACTNTGCCTGAATNGGGNNAAGCCNGAGNNA 462543 Query 618 AC 619 || Sbjct 462542 AC 462541 Score = 324 bits (358), Expect = 6e-86 Identities = 386/526 (73%), Gaps = 15/526 (3%) Strand=Plus/Minus Query 82 TTTCTTCTAAAGCTAAATATTGGCCAGAGACCGATAGCGCACAAGTAGAGTGATCGAAAG 141 || | | || |||| ||| | | | | |||||||| ||| ||||| | |||||| ||||| Sbjct 453944 TTCCNTNTANAGCTNAATNTNGNCGANAGACCGATNGCGNACAAGNACAGTGATGGAAAG 453885 Query 142 ATGAAAAGCACTTTGGAAAGAGAGTTAAAAAGCACGTGAAATTGTTGAAAGGGAAGCGCT 201 |||||||| |||||| ||||||||| |||||| ||||||||||||||||||||||| || Sbjct 453884 ATGAAAAGAACTTTGAAAAGAGAGTGAAAAAGTACGTGAAATTGTTGAAAGGGAAGGGCA 453825 Query 202 TGCAACCAGACTTGCCCGCAGTTGCTCAACCGGCCCCTCGGCCG--GTGCACTCTTCTGC 259 | | ||||| || ||| | | || ||| | | | | | ||| | Sbjct 453824 TTTGATCAGACATGGTGTTTTGTGCCCT--CTGCTCCTTGTGGGTAGGGGAATCT-CGCA 453768 Query 260 GGTCA---GGCCAGCATCAGCTCGGGCGGTCGGATAAAGGCCCCGGGAATGTGGCCCCCT 316 ||| |||||||||||| | || || ||||||| || ||||||| || | Sbjct 453767 TTTCACTGGGCCAGCATCAGTTTTGGTGGCAGGATAAAT-CCATAGGAATGTAGCTTGCC 453709 Query 317 TCGGGGGGTGTTATAGCCCGGGGTGGAATGCGGCCCGCCTGGACTGAGGTCCGCGC--TC 374 |||| || |||||||| | || |||| | ||| || ||||||||| | ||| | Sbjct 453708 TCGGTAAGTATTATAGCCTGTGG--GAATACTGCCAGCTGGGACTGAGGACTGCGACGTA 453651 Query 375 CGGCTAGGATGCTGGCGTAATGGTTGTAAGCGGCCCGTCTTGGAACACGGACCAAGGAGT 434 | | ||||||||||| |||||||| || || |||||||||| ||||||||||||||||| Sbjct 453650 AGTCAAGGATGCTGGCATAATGGTTATATGCCGCCCGTCTTGAAACACGGACCAAGGAGT 453591 Query 435 CTAACATCTATGCGAGTGTTTGGGTGTCAAACCCGTGCGCGTAATGAAAGTGAACGGAGG 494 ||||| ||||||||||||||||||||| |||||| | ||||||||||||||||||| ||| Sbjct 453590 CTAACGTCTATGCGAGTGTTTGGGTGTAAAACCCATACGCGTAATGAAAGTGAACGTAGG 453531 Query 495 -TGGGAACCCGTGAG-GGTGCACCATCGACCGATCCTGATGTCTTCGGATGGATTTGAGT 552 |||| | || || |||| || |||||||||||||| | || | || | |||| Sbjct 453530 TTGGGGCNTNGCAAGAGGNGCACAATNGACCGATCCTGATGNNNTNGGNTNGANTNGAGT 453471 Query 553 AAGAGCATAGCTGTTGGGACCCGAAAGATGGTGAACTATGCCTGAA 598 ||| ||||| | || |||| ||| | ||| ||||| ||| || Sbjct 453470 AAGNGCATANCNGTNNGGACNNGAANGNTGGNNNACTATNCCTNAA 453425 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 2079999635350