Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Saccharomyces_20cerevisiae_20[genbank_20GCA_5F001738395.1_202016-09- 21] 76 sequences; 12,238,557 total letters Query= AAMG01002236.1 Length=287 Score E Sequences producing significant alignments: (Bits) Value seq12 219 7e-55 seq36 172 9e-41 >seq12 Length=1086630 Score = 219 bits (242), Expect = 7e-55 Identities = 229/292 (78%), Gaps = 18/292 (6%) Strand=Plus/Minus Query 2 TACGAGAGGAACCGCGGAATTCAGAATAATTGGTTTTTGCGGCTGTCTGACCAGGCAGTG 61 |||||||||||| | | ||| || |||||||||||||||||||||||| |||||| || Sbjct 464249 TACGAGAGGAACAGTTCA-TTCGGA-TAATTGGTTTTTGCGGCTGTCTGATCAGGCATTG 464192 Query 62 CCGCGAAGCTACCATCTGCTGGATTATGGCTGAACGCCTCTAAGTCAGAATCCATGCCAG 121 |||||||||||||||| |||||||||||||||||||||||||||||||||||||||| || Sbjct 464191 CCGCGAAGCTACCATCCGCTGGATTATGGCTGAACGCCTCTAAGTCAGAATCCATGCTAG 464132 Query 122 AACGGGGTGA-TTCTCTCCT--GCACATCGTAGTCGGATACGAAT-AGGCTT-------- 169 |||| ||||| |||| | || |||| ||| |||||||||| |||| | Sbjct 464131 AACGCGGTGATTTCTTTGCTCCACACAATATAGATGGATACGAATAAGGCGTCCTTGTGG 464072 Query 170 CGGCCCCGAACCTTAGCAGGCCGGCAACGG-GCGTCCCGCGGAA--GCGCGGGGCGCTCA 226 || | | ||||| |||||||| ||||||| || |||||| || ||| ||| Sbjct 464071 CGTCGCTGAACCATAGCAGGCTAGCAACGGTGCACTTGGCGGAAAGGCCTTGGGTGCT-T 464013 Query 227 GCTGGCGGATTGCAATTTCACCATGCGCAGGGATAAATCCTTTGCAGACGAC 278 ||||||| |||||||| ||| |||| |||||||||| |||| | ||||| Sbjct 464012 GCTGGCGAATTGCAATGTCATTTTGCGTGGGGATAAATCATTTGTATACGAC 463961 Score = 210 bits (232), Expect = 4e-52 Identities = 227/292 (78%), Gaps = 18/292 (6%) Strand=Plus/Minus Query 2 TACGAGAGGAACCGCGGAATTCAGAATAATTGGTTTTTGCGGCTGTCTGACCAGGCAGTG 61 |||||||||||| | | ||| || |||||||||||||||||||||||| |||||| || Sbjct 493323 TACGAGAGGAACAGTTCA-TTCGGA-TAATTGGTTTTTGCGGCTGTCTGATCAGGCATTG 493266 Query 62 CCGCGAAGCTACCATCTGCTGGATTATGGCTGAACGCCTCTAAGTCAGAATCCATGCCAG 121 |||||||||||||||| |||||||||||||||||||||||||||||||||||||||| || Sbjct 493265 CCGCGAAGCTACCATCCGCTGGATTATGGCTGAACGCCTCTAAGTCAGAATCCATGCTAG 493206 Query 122 AACGGGGTGA-TTCTCTCCT--GCACATCGTAGTCGGATACGAAT-AGGCTT-------- 169 |||| ||||| |||| | || |||| ||| |||||||||| |||| | Sbjct 493205 AACGCGGTGATTTCTTTGCTCCACACAATATAGATGGATACGAATAAGGCGTCCTTGTGG 493146 Query 170 CGGCCCCGAACCTTAGCAGGCCGGCAACGG-GCGTCCCGCGGAA--GCGCGGGGCGCTCA 226 || | | ||||| |||||||| ||||||| || |||||| || ||| ||| Sbjct 493145 CGTCGCTGAACCATAGCAGGCTAGCAACGGTGCACTTGGCGGAAAGGCCTTGGGTGCT-T 493087 Query 227 GCTGGCGGATTGCAATTTCACCATGCGCAGGGATAAATCCTTTGCAGACGAC 278 || ||||||| ||||| ||| || | |||||||||| |||| | ||||| Sbjct 493086 GCCGGCGGATAGCAATGTCATTTTGAGTGGGGATAAATCATTTGTATACGAC 493035 Score = 190 bits (210), Expect = 3e-46 Identities = 172/211 (82%), Gaps = 14/211 (7%) Strand=Plus/Minus Query 1 GTACGAGAGGAACCGCGGAATTCAGAATAATTGGTTTTTGCGGCTGTCTGACCAGGCAGT 60 ||||||||||||| | | ||| || |||||||||||||||||||||||| |||||| | Sbjct 454340 GTACGAGAGGAACAGTTCA-TTCGGA-TAATTGGTTTTTGCGGCTGTCTGATCAGGCATT 454283 Query 61 GCCGCGAAGCTACCATCTGCTGGATTATGGCTGAACGCCTCTAAGTCAGAATCCATGCCA 120 ||||||||||||||||| |||||||||||||||||||||||||||||||||||||||| | Sbjct 454282 GCCGCGAAGCTACCATCCGCTGGATTATGGCTGAACGCCTCTAAGTCAGAATCCATGCTA 454223 Query 121 GAACGGGGTGA-TTCTCTCCT--GCACATCGTAGTCGGATACGAAT-AGGCTT------- 169 ||||| ||||| |||| | || |||| ||| |||||||||| |||| | Sbjct 454222 GAACGCGGTGATTTCTTTGCTCCACACAATATAGATGGATACGAATAAGGCGTCCTTGTG 454163 Query 170 -CGGCCCCGAACCTTAGCAGGCCGGCAACGG 199 || | | ||||| |||||||| ||||||| Sbjct 454162 GCGTCGCTGAACCATAGCAGGCTAGCAACGG 454132 >seq36 Length=471 Score = 172 bits (190), Expect = 9e-41 Identities = 192/250 (77%), Gaps = 16/250 (6%) Strand=Plus/Plus Query 44 CTGTCTGACCAGGCAGTGCCGCGAAGCTACCATCTGCTGGATTATGGCTGAACGCCTCTA 103 |||||||| |||||| |||||||||||||||||| ||||||||||||||||||||||||| Sbjct 1 CTGTCTGATCAGGCATTGCCGCGAAGCTACCATCCGCTGGATTATGGCTGAACGCCTCTA 60 Query 104 AGTCAGAATCCATGCCAGAACGGGGTGA-TTCTCTCCT--GCACATCGTAGTCGGATACG 160 ||||||||||||||| |||||| ||||| |||| | || |||| ||| ||||||| Sbjct 61 AGTCAGAATCCATGCTAGAACGCGGTGATTTCTTTGCTCCACACAATATAGATGGATACG 120 Query 161 AAT-AGGCTT--------CGGCCCCGAACCTTAGCAGGCCGGCAACGG-GCGTCCCGCGG 210 ||| |||| | || | | ||||| |||||||| ||||||| || |||| Sbjct 121 AATAAGGCGTCCTTGTGGCGTCGCTGAACCATAGCAGGCTAGCAACGGTGCTCTTGGCGG 180 Query 211 AA--GCGCGGGGCGCTCAGCTGGCGGATTGCAATTTCACCATGCGCAGGGATAAATCCTT 268 || || ||| ||| || ||||||| ||||| ||| || | |||||||||| || Sbjct 181 AAAGGCCTTGGGTGCT-TGCCGGCGGATAGCAATGTCATTTTGAGTGGGGATAAATCATT 239 Query 269 TGCAGACGAC 278 || | ||||| Sbjct 240 TGTATACGAC 249 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 819199396864