Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Saccharomyces_20cerevisiae_20[genbank_20GCA_5F900177915.1_202017-04- 25] 4,708 sequences; 12,504,838 total letters Query= AAMG01002175.1 Length=414 Score E Sequences producing significant alignments: (Bits) Value seq1250 251 2e-64 seq1764 224 2e-56 seq4353 129 1e-27 >seq1250 Length=2028 Score = 251 bits (278), Expect = 2e-64 Identities = 314/421 (75%), Gaps = 27/421 (6%) Strand=Plus/Plus Query 5 TTTACAACCCGAAGGCCTTCTTCATACACGCGGCATGGCTGCATCAGGCTTGCGCCCATT 64 |||||||||||||||||||| || |||||||| | |||||||||||||| |||||||| Sbjct 1126 TTTACAACCCGAAGGCCTTCATCCCTCACGCGGCGTCGCTGCATCAGGCTTTCGCCCATT 1185 Query 65 GTGCAATATTCCCCACTGCTGCCTCCCGTAGGAGTCTGGACCGTGTCTCAGTTCCAGTGT 124 ||||||||||||||||||||||||||||||||||||||| |||||||||||| ||||||| Sbjct 1186 GTGCAATATTCCCCACTGCTGCCTCCCGTAGGAGTCTGGGCCGTGTCTCAGTCCCAGTGT 1245 Query 125 GGCTGGTCATCCTCTCAGACCAGCTAGGGATCGTCGCCTAGGTGGGCCATTACCCCGCCA 184 ||| |||| |||||||| || |||| ||||||||| ||| |||||| ||||| ||| Sbjct 1246 GGCCGGTCGCCCTCTCAGGCCGGCTACCCGTCGTCGCCTTGGTAGGCCATCACCCCACCA 1305 Query 185 ACTAGCTAATCCCATCTGGGTTCATCC--GATAGTGAGAGGCCCGAAGGTCCCCCTCTTT 242 || |||| || | | ||||| || | | | | || || || | | Sbjct 1306 ACAAGCTGATAGGCCGCGAGCCCATCCCTGACCGAAAAACTTTCCAA---CCACCCCCAT 1362 Query 243 GGTCTTGCGACG----TTATGCGGTATTAGCCACCGTTTCCAGTGGTTATCCC--CCTCC 296 | | | |||| ||| ||||||||||| | |||||| | |||||||| || Sbjct 1363 G--CGAG-GACGGCTCATATCCGGTATTAGCCCCGGTTTCCCGGAGTTATCCCGAAGTCA 1419 Query 297 ATCAGGCA-GTTTCCCAGACATTACTCACCCGTCCGCCACTCGTCAGCGAAGCAGCAAGC 355 | |||| ||| | || |||||||||||| ||||||| || || |||||||| Sbjct 1420 A--GGGCAGGTTACTCACGTGTTACTCACCCGTTCGCCACTAATCCGC---CCAGCAAGC 1474 Query 356 T--GCTTCCTGTTACCGTTCGACTTGCATGTGTTAGGCCTGCCGCCAGCGTTCAATCTGA 413 | || || | |||||||||||||||||||| || ||||||||||||| |||| Sbjct 1475 TGGGCATC-----ATCGTTCGACTTGCATGTGTTAAGCACGCCGCCAGCGTTCGTCCTGA 1529 Query 414 G 414 | Sbjct 1530 G 1530 >seq1764 Length=1162 Score = 224 bits (248), Expect = 2e-56 Identities = 139/149 (93%), Gaps = 0/149 (0%) Strand=Plus/Plus Query 1 GTACTTTACAACCCGAAGGCCTTCTTCATACACGCGGCATGGCTGCATCAGGCTTGCGCC 60 || ||||||||||||||||||||||||| ||||||||||| |||| ||||||||| |||| Sbjct 1014 GTGCTTTACAACCCGAAGGCCTTCTTCACACACGCGGCATTGCTGGATCAGGCTTTCGCC 1073 Query 61 CATTGTGCAATATTCCCCACTGCTGCCTCCCGTAGGAGTCTGGACCGTGTCTCAGTTCCA 120 |||||| ||| |||||||||||||||||||||||||||||||| |||||||||||| ||| Sbjct 1074 CATTGTCCAAAATTCCCCACTGCTGCCTCCCGTAGGAGTCTGGGCCGTGTCTCAGTCCCA 1133 Query 121 GTGTGGCTGGTCATCCTCTCAGACCAGCT 149 |||||||||||| |||||||||||||||| Sbjct 1134 GTGTGGCTGGTCGTCCTCTCAGACCAGCT 1162 >seq4353 Length=669 Score = 129 bits (142), Expect = 1e-27 Identities = 149/196 (76%), Gaps = 6/196 (3%) Strand=Plus/Plus Query 220 GAGGCCCGAAGGTCCCCCTCTTTGGTCTTGCGACGTTATGCGGTATTAGCCACCGTTTCC 279 |||||||||||||||||| |||| || || |||||||||||| | |||| Sbjct 1 GAGGCCCGAAGGTCCCCCGCTTTCATCCGTAGATCGTATGCGGTATTAATCCGGCTTTCG 60 Query 280 AGTGGTTATCCCCCTCCATCAGG-CAGTTTCCCAGACATTACTCACCCGTCCGCCACTCG 338 || |||||||| | | |||| || |||| | ||||||||||||| ||||||||| Sbjct 61 CCGGGCTATCCCCCACTA-CAGGACATGTTCCGATGTATTACTCACCCGTTCGCCACTCG 119 Query 339 TCAGCGAAGCAGCAAGCTGCTTCCTGTTACCGTTCGACTTGCATGTGTTAGGCCTGCCGC 398 || | || |||||| | | || | ||||||||||||||||||| |||| |||||| Sbjct 120 CCACC--AGGTGCAAGCACC--CGTGCTGCCGTTCGACTTGCATGTGTAAGGCATGCCGC 175 Query 399 CAGCGTTCAATCTGAG 414 |||||||||||||||| Sbjct 176 CAGCGTTCAATCTGAG 191 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1222342449408