Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Saccharomyces_20cerevisiae_20[genbank_20GCA_5F900178025.1_202017-04- 25] 7,290 sequences; 12,699,436 total letters Query= AAMG01001213.1 Length=600 Score E Sequences producing significant alignments: (Bits) Value seq3068 356 8e-96 seq3302 300 6e-79 seq4278 248 3e-63 seq703 201 4e-49 >seq3068 Length=5922 Score = 356 bits (394), Expect = 8e-96 Identities = 418/554 (75%), Gaps = 26/554 (5%) Strand=Plus/Plus Query 52 CGGCATTCGGAGTTTGGTTGATTTCGG--TAAGCTTG--TGGGCCCCCTAGACCATC-CA 106 ||| |||||||||||| | || ||| ||| || | | ||||| | ||||| || Sbjct 2444 CGGTATTCGGAGTTTGCT--ATGGCGGGGTAATCTGCAATAGACCCCCCA-ACCATGACA 2500 Query 107 GTGCTCTACCTCCGG-GAAGAAACACGCGACGCTGCACCTAAATGCATTTCGGGGAGAAC 165 |||||||||| ||| | || ||||| | | || |||||||| |||||| |||||| Sbjct 2501 GTGCTCTACCCCCGAAGGTGAGACACGAGGCACT--ACCTAAATAGTTTTCGGAGAGAAC 2558 Query 166 CAGCTATCACGAAGTTTGATTGGCCTTTCACCCCTATCCACAGGTCATCCCCTCAGTTTT 225 ||||||| | | ||||| || ||||||||||||||||||||| ||||||||| | |||| Sbjct 2559 CAGCTATTTCCAGGTTTGTTTAGCCTTTCACCCCTATCCACAGCTCATCCCCTAACTTTT 2618 Query 226 CAACCTAAGTGGGTTCGGTCCTCCACGCGGTCTTACCCGCGCTTCAACCTGCCCATGGAT 285 |||| | ||||||||||| |||||| || ||||| ||||| |||| |||||||| Sbjct 2619 CAACGTTAGTGGGTTCGGACCTCCAGTACGTGTTACCGCACCTTCATCCTGGCCATGGAT 2678 Query 286 AGATCACTTCGCTTCGGGTCTTGATCGTGCCACTCATACGCCCTATTCGGACTCGCTTTC 345 ||||||| | | ||||||||| | || ||| | ||||||||||||||||||||||| Sbjct 2679 AGATCACCTGGTTTCGGGTCTACGCCCAGCAACTGA-ACGCCCTATTCGGACTCGCTTTC 2737 Query 346 GCTACGGCTACCCCACACGGGTTAACCTCGCGACACAACGCAAACTCGCAGGCTCATTCT 405 |||||| || ||| | || |||||| || || || |||| || |||| | | |||| | Sbjct 2738 GCTACGCCTGCCCTATAC-GGTTAAGCTTGCTACTGAACG-TAAGTCGCTGACCCATTAT 2795 Query 406 TCAAAAGGCACGCCGTCACCTGGTACCTAAAAGGCACTTCAGCTCCGACGGATTGTAGGC 465 ||||||| ||||||||||| | || || |||||||| | ||||| || Sbjct 2796 ACAAAAGGTACGCCGTCACC----CCTTACGAG--------GCTCCGACTGTTTGTATGC 2843 Query 466 ACATGGTTTCAGGTACTATTTCACTCCCCGCCAGGGGTACTTTTCACCTTTCCCTCACGG 525 | ||||||||| |||||||||||||| || ||||| |||||| |||||||||||||| Sbjct 2844 ATGCGGTTTCAGGATCTATTTCACTCCCCTCCCGGGGTTCTTTTCGCCTTTCCCTCACGG 2903 Query 526 TACTTGTCCGCTATCGGTCACCAAGGAGTATTTAGGCTTAACGGGTGGTCCCGCCAGATT 585 |||| || | ||||||||| | |||||||||| ||| || ||||||| ||| || Sbjct 2904 TACTGGTTCACTATCGGTCGATCACGAGTATTTAGCCTTGGAGGATGGTCCCCCCATCTT 2963 Query 586 CACACGAAATTTCA 599 || || |||||| Sbjct 2964 CAGACAGGATTTCA 2977 >seq3302 Length=226 Score = 300 bits (332), Expect = 6e-79 Identities = 203/226 (90%), Gaps = 1/226 (0%) Strand=Plus/Minus Query 3 GACTACGGAGCTTAATCCCCCGCAGTCTCACAGCCGCGCTCTCACTTCCCGGCATTCGGA 62 |||||||||||||| ||||||||||||||| ||| |||| |||||| |||||||||||| Sbjct 226 GACTACGGAGCTTATCCCCCCGCAGTCTCACTGCCACGCTTTCACTTACCGGCATTCGGA 167 Query 63 GTTTGGTTGATTTCGGTAAGCTTGTGGGCCCCCTAGACCATCCAGT-GCTCTACCTCCGG 121 |||||| ||| || |||| ||||| || ||| | | ||||||||| ||||||||||||| Sbjct 166 GTTTGGCTGACGTCAGTAACCTTGTAGGGCCCATCGGCCATCCAGTAGCTCTACCTCCGG 107 Query 122 GAAGAAACACGCGACGCTGCACCTAAATGCATTTCGGGGAGAACCAGCTATCACGAAGTT 181 |||||||||| |||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 106 CAAGAAACACGTGACGCTGCACCTAAATGCATTTCGGGGAGAACCAGCTATCACGAAGTT 47 Query 182 TGATTGGCCTTTCACCCCTATCCACAGGTCATCCCCTCAGTTTTCA 227 |||||||||||||||||||| ||||||||||||||| ||||||| Sbjct 46 TGATTGGCCTTTCACCCCTAACCACAGGTCATCCCCCAGGTTTTCA 1 >seq4278 Length=221 Score = 248 bits (274), Expect = 3e-63 Identities = 195/231 (84%), Gaps = 12/231 (5%) Strand=Plus/Minus Query 246 CTCCACGCGGTCTTACCCGCGCTTCAACCTGCCCATGGATAGATCACTTCGCTTCGGGTC 305 |||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||| Sbjct 221 CTCCACGCGGTCTTACCCGCGCTTCAACCTGCCCATGGCTAGATCACTTCGCTTCGGGTC 162 Query 306 TTGATCGTGCCACTCATA--CGCCCTATTCGGACTCGCTTTCGCTACGGCTACCCCACAC 363 | || | || ||| || |||||| |||||||||||||||||||||||| |||||||| Sbjct 161 TAGACCCAGCGACT-ATGGGCGCCCTGTTCGGACTCGCTTTCGCTACGGCTTCCCCACAC 103 Query 364 GGGTTAACCTCGCGACACAACGCAAACTCGCAGGCTCATTCTTCAAAAGGCACGCCGTCA 423 ||||||||||||| || | | | ||||||||||||||||||||||||||||||| |||| Sbjct 102 GGGTTAACCTCGCCACTGAGCACTAACTCGCAGGCTCATTCTTCAAAAGGCACGCTGTCA 43 Query 424 CCTGGTACCTAAAAGGCACTTCAGCTCCGACGGATTGTAGGCACATGGTTT 474 || || || || ||||| |||||||||||||||| ||||| Sbjct 42 CC-----CC----AGCCAAGGAGGCTCCAACGGATTGTAGGCACACGGTTT 1 >seq703 Length=214 Score = 201 bits (222), Expect = 4e-49 Identities = 131/144 (91%), Gaps = 0/144 (0%) Strand=Plus/Plus Query 455 GGATTGTAGGCACATGGTTTCAGGTACTATTTCACTCCCCGCCAGGGGTACTTTTCACCT 514 |||||||||||||| ||||||||||||||||||||||||| || |||||||||||||||| Sbjct 1 GGATTGTAGGCACACGGTTTCAGGTACTATTTCACTCCCCTCCCGGGGTACTTTTCACCT 60 Query 515 TTCCCTCACGGTACTTGTCCGCTATCGGTCACCAAGGAGTATTTAGGCTTAACGGGTGGT 574 ||||||||||||||| |||||||||||||||| | | |||||||||||||| | ||||| Sbjct 61 TTCCCTCACGGTACTGGTCCGCTATCGGTCACTAGGTAGTATTTAGGCTTAGCAAGTGGT 120 Query 575 CCCGCCAGATTCACACGAAATTTC 598 | ||||||||||||||| ||||| Sbjct 121 CTTGCCAGATTCACACGAGATTTC 144 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1817467496960