Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Saccharomyces_20cerevisiae_20[genbank_20GCA_5F900178035.1_202017-04- 25] 8,158 sequences; 13,853,465 total letters Query= AAMG01000140.1 Length=336 Score E Sequences producing significant alignments: (Bits) Value seq5714 197 3e-48 seq2960 149 1e-33 >seq5714 Length=6154 Score = 197 bits (218), Expect = 3e-48 Identities = 241/325 (74%), Gaps = 9/325 (3%) Strand=Plus/Minus Query 11 AGGGGGGTGAAATAGACCCTGAACCCGCGCGCCTACAAGCGGTCGGAGCCGAGTGATTCG 70 ||||| |||||||||| |||||| |||| || ||||| | ||||||||| || | | Sbjct 3026 AGGGGAGTGAAATAGATCCTGAAACCGCATGCATACAAACAGTCGGAGCCTCGTAAGG-G 2968 Query 71 GTGACGGCGTGCCTTTTGCATAATGAGCCTACGAGTTAGTCGT-CACCAGCGAGGTTAAG 129 |||||||||| ||||||| |||||| | | ||| ||| ||| || ||| || |||| Sbjct 2967 GTGACGGCGTACCTTTTGTATAATGGGTCAGCGACTTA--CGTTCAGTAGCAAGCTTAAC 2910 Query 130 GGCTTCAGGCCCGTTAGCCGAAGTGAAAGCGAGCCTTAACAGGGCGACGAGTTGGTGGCG 189 | | ||| || || || ||||||||| | || |||||| ||||| ||| Sbjct 2909 CGTATAGGGC-----AGGCGTAGCGAAAGCGAGTCCGAATAGGGCGTTCAGTTGCTGGGC 2855 Query 190 CTAGACGCGAAACCTTGTGATCTACCCACGAGCAGGTTGAAGTCGCGGTAACGCGTGATG 249 ||||| ||||||| |||||||| ||| | |||| ||||| |||||||| ||| || Sbjct 2854 GTAGACCCGAAACCAGGTGATCTATCCATGGCCAGGATGAAGGTGCGGTAACACGTACTG 2795 Query 250 GAGGACCGAACCGGTAAACGTTGAAAAGTTTTCGGATGACTCGCGGGTAGGGGTGAAAGG 309 |||| ||||||| |||||||||||||| |||||| | || ||||||||||||| Sbjct 2794 GAGGTCCGAACCCACTAACGTTGAAAAGTTAGGGGATGAGCTGTGGATAGGGGTGAAAGG 2735 Query 310 CCAATCAAACTGGGAAATAGCTCGT 334 | || ||||| |||||||||| || Sbjct 2734 CTAAACAAACCTGGAAATAGCTGGT 2710 >seq2960 Length=291 Score = 149 bits (164), Expect = 1e-33 Identities = 200/269 (74%), Gaps = 17/269 (6%) Strand=Plus/Plus Query 1 TAGCCCGAGCAGGGGGGTGAAATAGACCCTGAACCCGCGCGCCTACAAGCGGTCGGAGCC 60 || |||| | ||||| ||||||||| |||||| ||| | |||||||| | || |||||| Sbjct 11 TACCCCGGG-AGGGGAGTGAAATAGTACCTGAAACCGTGTGCCTACAATCCGTTGGAGCC 69 Query 61 GAGT--GATTCGGTGACGGCGTGCCTTTTGCATAATGAGCCTACGAGTTAGTCGTCACCA 118 | | | |||||| |||||||||||| | ||||||||| ||||||||| ||| Sbjct 70 TCCTTGGCTGGGGTGACAGCGTGCCTTTTGAAGAATGAGCCTGCGAGTTAGTGCTCAGTG 129 Query 119 GCGAGGTTAAGGGCTTCAGGCCCGTTAGCCGAAGTGAAAGCGAGCCTTAACAGGGCGAC- 177 |||||||||| | | || | ||||| || ||||||||| | ||||||||| | Sbjct 130 GCGAGGTTAA-CCCGTGTGG---GGAAGCCGTAGCGAAAGCGAGTCCGAACAGGGCGCCC 185 Query 178 -GAGTTGGTGGCGCTAGACGCGAAACCTTGTGATCTACCCACGAGCAGGTTGAAGTCGC- 235 ||| | ||| |||||| |||| | |||||||| ||| | ||||||||||| ||| Sbjct 186 ATAGTCGCTGGGTCTAGACCCGAAGCGAAGTGATCTAGCCATGGGCAGGTTGAAG-CGCG 244 Query 236 GGTAA---CGCGTGATGGAGGACCGAACC 261 ||||| |||| |||||||||||||| Sbjct 245 GGTAAGACCGCG---TGGAGGACCGAACC 270 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 972720638976