Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Saccharomyces_20cerevisiae_20[genbank_20GCA_5F900178035.1_202017-04- 25] 8,158 sequences; 13,853,465 total letters Query= AAMG01001291.1 Length=420 Score E Sequences producing significant alignments: (Bits) Value seq5714 430 3e-118 seq2960 181 3e-43 >seq5714 Length=6154 Score = 430 bits (476), Expect = 3e-118 Identities = 353/415 (85%), Gaps = 12/415 (3%) Strand=Plus/Plus Query 4 CCGATCCACAGGTCATTCCGCTAACTTTTTCAACGGTAGTCGGTTCGGTCCTCCAGTTAG 63 || |||||||| |||| || ||||||||| ||||| |||| ||||||| |||||||| | Sbjct 2744 CCTATCCACAGCTCATCCC-CTAACTTTT-CAACGTTAGTGGGTTCGGACCTCCAGTACG 2801 Query 64 TAGTTACCCAACCTTTCAACCTGCCCATAGGATAGATCGCCCGGTTTTCGGGTCTATTTC 123 | |||||| ||||| || |||| |||| ||||||||| || ||||| |||||||| | Sbjct 2802 T-GTTACCGCACCTT-CATCCTGGCCAT-GGATAGATCACCTGGTTT-CGGGTCTACG-C 2856 Query 124 CCAGCGACTAGACGCCCTAGTAAGACTCGCTTTTCGCTACGCCTCCCCTATTCGGTTAAG 183 ||||| ||| |||||||| | |||||||||| |||||||||| |||||| |||||||| Sbjct 2857 CCAGCAACTGAACGCCCTATTCGGACTCGCTTT-CGCTACGCCTGCCCTATACGGTTAAG 2915 Query 184 CTTTGCCACTGAAAATAAGTCGCTGACCCATTATACAAAAGGTACGCAGTCACCCAACAA 243 ||| || |||||| |||||||||||||||||||||||||||||||| ||||||| | Sbjct 2916 CTT-GCTACTGAACGTAAGTCGCTGACCCATTATACAAAAGGTACGCCGTCACCC--CTT 2972 Query 244 AGTGGGCTCCCACTGCTTGTACGCATACGGTTTCAGGATCTATTTCACTCCCCTCTCCGG 303 | |||||| |||| ||||| |||| |||||||||||||||||||||||||||| |||| Sbjct 2973 ACGAGGCTCCGACTGTTTGTATGCATGCGGTTTCAGGATCTATTTCACTCCCCTC-CCGG 3031 Query 304 GGTTCTTTTCGCCTTTCCCTCACGGTACTAGTTCACTATCGGTCAGTCAGTAGTATTTAG 363 ||||||||||||||||||||||||||||| |||||||||||||| ||| ||||||||| Sbjct 3032 GGTTCTTTTCGCCTTTCCCTCACGGTACTGGTTCACTATCGGTCGATCACGAGTATTTAG 3091 Query 364 CCTTGGAGGATGGTCCCCCCATATTCAGACAAAGTTTCTCGTGCTCCGTCCTACT 418 |||||||||||||||||||||| |||||||| |||| |||| ||| |||||| Sbjct 3092 CCTTGGAGGATGGTCCCCCCATCTTCAGACAGGATTTCACGTGTCCCGCCCTACT 3146 >seq2960 Length=291 Score = 181 bits (200), Expect = 3e-43 Identities = 223/292 (76%), Gaps = 11/292 (4%) Strand=Plus/Minus Query 30 TTTTCAACGGTAGTCGGTTCGGTCCTCCAGTTAGTAGTTACCCAACCTTTCAACCTGCCC 89 |||||||| | || |||||||||||||| || |||||| ||| |||||||||| Sbjct 285 TTTTCAACCCTGGTGGGTTCGGTCCTCCACGCGGTC-TTACCCGCGCTT-CAACCTGCCC 228 Query 90 ATAGGATAGATCGCCCGGTTTTCGGGTCTATTTCCCAGCGACTA--GACGCCCTAGTAAG 147 || || |||||| | | || |||||||| ||||||||||| | |||||| | | Sbjct 227 AT-GGCTAGATCACTTCGCTT-CGGGTCTAGA-CCCAGCGACTATGGGCGCCCTGTTCGG 171 Query 148 ACTCGCTTTTCGCTACGCCTCCCCTATTCGGTTAAGCTTTGCCACTGAAAA-TAAGTCGC 206 ||||||||| ||||||| || ||| | ||| | | | | |||||||| | ||| |||| Sbjct 170 ACTCGCTTT-CGCTACGGCTTCCCCACACGGGTTAACCTCGCCACTGAGCACTAACTCGC 112 Query 207 TGACCCATTATACAAAAGGTACGCAGTCACCCAA-CAAAGTGGGCTCCCACTGCTTGTAC 265 | | |||| | ||||||| |||| ||||||| | | ||| |||||| || | ||||| Sbjct 111 AGGCTCATTCTTCAAAAGGCACGCTGTCACCCCAGCCAAGGAGGCTCCAACGGATTGTAG 52 Query 266 GCATACGGTTTCAGGATCTATTTCACTCCCCTCTCCGGGGTTCTTTTCGCCT 317 ||| ||||||||||| |||||||||||||||| ||||||| |||||| ||| Sbjct 51 GCACACGGTTTCAGGTACTATTTCACTCCCCTC-CCGGGGTACTTTTCACCT 1 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1241498710272