Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Saccharomyces_20cerevisiae_20[genbank_20GCA_5F900178075.1_202017-04- 25] 6,246 sequences; 12,545,896 total letters Query= AAMG01001213.1 Length=600 Score E Sequences producing significant alignments: (Bits) Value seq1991 356 8e-96 seq5380 196 2e-47 >seq1991 Length=3667 Score = 356 bits (394), Expect = 8e-96 Identities = 418/554 (75%), Gaps = 26/554 (5%) Strand=Plus/Plus Query 52 CGGCATTCGGAGTTTGGTTGATTTCGG--TAAGCTTG--TGGGCCCCCTAGACCATC-CA 106 ||| |||||||||||| | || ||| ||| || | | ||||| | ||||| || Sbjct 2730 CGGTATTCGGAGTTTGCT--ATGGCGGGGTAATCTGCAATAGACCCCCCA-ACCATGACA 2786 Query 107 GTGCTCTACCTCCGG-GAAGAAACACGCGACGCTGCACCTAAATGCATTTCGGGGAGAAC 165 |||||||||| ||| | || ||||| | | || |||||||| |||||| |||||| Sbjct 2787 GTGCTCTACCCCCGAAGGTGAGACACGAGGCACT--ACCTAAATAGTTTTCGGAGAGAAC 2844 Query 166 CAGCTATCACGAAGTTTGATTGGCCTTTCACCCCTATCCACAGGTCATCCCCTCAGTTTT 225 ||||||| | | ||||| || ||||||||||||||||||||| ||||||||| | |||| Sbjct 2845 CAGCTATTTCCAGGTTTGTTTAGCCTTTCACCCCTATCCACAGCTCATCCCCTAACTTTT 2904 Query 226 CAACCTAAGTGGGTTCGGTCCTCCACGCGGTCTTACCCGCGCTTCAACCTGCCCATGGAT 285 |||| | ||||||||||| |||||| || ||||| ||||| |||| |||||||| Sbjct 2905 CAACGTTAGTGGGTTCGGACCTCCAGTACGTGTTACCGCACCTTCATCCTGGCCATGGAT 2964 Query 286 AGATCACTTCGCTTCGGGTCTTGATCGTGCCACTCATACGCCCTATTCGGACTCGCTTTC 345 ||||||| | | ||||||||| | || ||| | ||||||||||||||||||||||| Sbjct 2965 AGATCACCTGGTTTCGGGTCTACGCCCAGCAACTGA-ACGCCCTATTCGGACTCGCTTTC 3023 Query 346 GCTACGGCTACCCCACACGGGTTAACCTCGCGACACAACGCAAACTCGCAGGCTCATTCT 405 |||||| || ||| | || |||||| || || || |||| || |||| | | |||| | Sbjct 3024 GCTACGCCTGCCCTATAC-GGTTAAGCTTGCTACTGAACG-TAAGTCGCTGACCCATTAT 3081 Query 406 TCAAAAGGCACGCCGTCACCTGGTACCTAAAAGGCACTTCAGCTCCGACGGATTGTAGGC 465 ||||||| ||||||||||| | || || |||||||| | ||||| || Sbjct 3082 ACAAAAGGTACGCCGTCACC----CCTTACGAG--------GCTCCGACTGTTTGTATGC 3129 Query 466 ACATGGTTTCAGGTACTATTTCACTCCCCGCCAGGGGTACTTTTCACCTTTCCCTCACGG 525 | ||||||||| |||||||||||||| || ||||| |||||| |||||||||||||| Sbjct 3130 ATGCGGTTTCAGGATCTATTTCACTCCCCTCCCGGGGTTCTTTTCGCCTTTCCCTCACGG 3189 Query 526 TACTTGTCCGCTATCGGTCACCAAGGAGTATTTAGGCTTAACGGGTGGTCCCGCCAGATT 585 |||| || | ||||||||| | |||||||||| ||| || ||||||| ||| || Sbjct 3190 TACTGGTTCACTATCGGTCGATCACGAGTATTTAGCCTTGGAGGATGGTCCCCCCATCTT 3249 Query 586 CACACGAAATTTCA 599 || || |||||| Sbjct 3250 CAGACAGGATTTCA 3263 >seq5380 Length=172 Score = 196 bits (216), Expect = 2e-47 Identities = 151/179 (84%), Gaps = 9/179 (5%) Strand=Plus/Minus Query 324 CGCCCTATTCGGACTCGCTTTCGCTACGGCTACCCCACACGGGTTAACCTCGCGACACAA 383 |||||| |||||||||||||||||||||||| ||||||||||||||||||||| || | Sbjct 170 CGCCCTGTTCGGACTCGCTTTCGCTACGGCTTCCCCACACGGGTTAACCTCGCCACTGAG 111 Query 384 CGCAAACTCGCAGGCTCATTCTTCAAAAGGCACGCCGTCACCTGGTACCTAAAAGGCACT 443 | | ||||||||||||||||||||||||||||||| |||||| || || || Sbjct 110 CACTAACTCGCAGGCTCATTCTTCAAAAGGCACGCTGTCACC-----CC----AGCCAAG 60 Query 444 TCAGCTCCGACGGATTGTAGGCACATGGTTTCAGGTACTATTTCACTCCCCGCCAGGGG 502 ||||| |||||||||||||||| ||||||||||||||||||||||||| || |||| Sbjct 59 GAGGCTCCAACGGATTGTAGGCACACGGTTTCAGGTACTATTTCACTCCCCTCCCGGGG 1 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1817486472704