Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Saccharomyces_20cerevisiae_20[genbank_20GCA_5F900178185.1_202017-04- 22] 4,008 sequences; 12,879,491 total letters Query= AAMG01000304.1 Length=683 Score E Sequences producing significant alignments: (Bits) Value seq3940 668 0.0 seq772 172 2e-40 seq3123 127 9e-27 >seq3940 Length=2387 Score = 668 bits (740), Expect = 0.0 Identities = 556/670 (83%), Gaps = 15/670 (2%) Strand=Plus/Plus Query 23 TGTGAAGCTCCTTCGACGAGTCGAGTTGTTTGGGAATGCAGCTCTAAATGGGAGGTAAAT 82 ||| ||| ||||||| |||||||||||||||||||||||||||||| |||| ||||||| Sbjct 319 TGTAAAGTGCCTTCGAAGAGTCGAGTTGTTTGGGAATGCAGCTCTAAGTGGGTGGTAAAT 378 Query 83 TTCTTCTAAAGCTAAATATTGGCCAGAGACCGATAGCGCACAAGTAGAGTGATCGAAAGA 142 | | ||||||||||||||||||| |||||||||||||| ||||||| |||||| |||||| Sbjct 379 TCCATCTAAAGCTAAATATTGGCGAGAGACCGATAGCGAACAAGTACAGTGATGGAAAGA 438 Query 143 TGAAAAGCACTTTGGAAAGAGAGTTAAAAAGCACGTGAAATTGTTGAAAGGGAAGCGCTT 202 ||||||| |||||| ||||||||| |||||| ||||||||||||||||||||||| || | Sbjct 439 TGAAAAGAACTTTGAAAAGAGAGTGAAAAAGTACGTGAAATTGTTGAAAGGGAAGGGCAT 498 Query 203 GCAACCAGACTTGCCCGCAGTTGCTCAACCGGCCCCTCGGCCG--GTGCACTCTTCTGCG 260 | ||||| || ||| | | || ||| | | | | | ||| | Sbjct 499 TTGATCAGACATGGTGTTTTGTGCCCT--CTGCTCCTTGTGGGTAGGGGAATCT-CGCAT 555 Query 261 GTCA---GGCCAGCATCAGCTCGGGCGGTCGGATAAAGGCCCCGGGAATGTGGCCCCCTT 317 ||| |||||||||||| | || || ||||||| || ||||||| || | | Sbjct 556 TTCACTGGGCCAGCATCAGTTTTGGTGGCAGGATAAAT-CCATAGGAATGTAGCTTGCCT 614 Query 318 CGGGGGGTGTTATAGCCCGGGGTGGAATGCGGCCCGCCTGGACTGAGGTCCGCGC--TCC 375 ||| || |||||||| | || |||| | ||| || ||||||||| | ||| | Sbjct 615 CGGTAAGTATTATAGCCTGTGG--GAATACTGCCAGCTGGGACTGAGGACTGCGACGTAA 672 Query 376 GGCTAGGATGCTGGCGTAATGGTTGTAAGCGGCCCGTCTTGGAACACGGACCAAGGAGTC 435 | | ||||||||||| |||||||| || || |||||||||| |||||||||||||||||| Sbjct 673 GTCAAGGATGCTGGCATAATGGTTATATGCCGCCCGTCTTGAAACACGGACCAAGGAGTC 732 Query 436 TAACATCTATGCGAGTGTTTGGGTGTCAAACCCGTGCGCGTAATGAAAGTGAACGGAGGT 495 |||| ||||||||||||||||||||| |||||| | ||||||||||||||||||| |||| Sbjct 733 TAACGTCTATGCGAGTGTTTGGGTGTAAAACCCATACGCGTAATGAAAGTGAACGTAGGT 792 Query 496 GGGAACC-CGTGAG-GGTGCACCATCGACCGATCCTGATGTCTTCGGATGGATTTGAGTA 553 || || || || ||||||| ||||||||||||||||||||||||||||||||||||| Sbjct 793 TGGGGCCTCGCAAGAGGTGCACAATCGACCGATCCTGATGTCTTCGGATGGATTTGAGTA 852 Query 554 AGAGCATAGCTGTTGGGACCCGAAAGATGGTGAACTATGCCTGAATAGGGTGAAGCCAGA 613 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 853 AGAGCATAGCTGTTGGGACCCGAAAGATGGTGAACTATGCCTGAATAGGGTGAAGCCAGA 912 Query 614 GGAAACTCTGGTGGAGGCTCGCAGCGGTTCTGGCGTGCAAATCGATCGTCAAATTTGGGT 673 ||||||||||||||||||||| |||||||||| ||||||||||||||||| ||||||||| Sbjct 913 GGAAACTCTGGTGGAGGCTCGTAGCGGTTCTGACGTGCAAATCGATCGTCGAATTTGGGT 972 Query 674 ATAGGGGCGA 683 |||||||||| Sbjct 973 ATAGGGGCGA 982 >seq772 Length=900 Score = 172 bits (190), Expect = 2e-40 Identities = 221/299 (74%), Gaps = 22/299 (7%) Strand=Plus/Minus Query 405 CGGCCCGTCTTGGAACACGGACCAAGGAGTCTAACATCTATGCGAGTGTTTGGGT-GTCA 463 || ||||||||| |||||||||||||||||||||||| |||||||| |||||| | | Sbjct 645 CGACCCGTCTTGAAACACGGACCAAGGAGTCTAACATGTATGCGAGCCATTGGGTTGACT 586 Query 464 AACCCGTGCG-CGTAATGAAAGTGAACGG-AGGT-----------GGGA--ACCCGTGAG 508 || || ||| || | |||||| || || || | |||| | |||| || Sbjct 585 AAACCTAGCGGCGCAGTGAAAGCAAAGGGTAGCTTGTCTGCCCGAGGGAGGATCCGTAAG 526 Query 509 G-GTGCACCATCGACCGATCCTGATGTCTTCGGATGGATTTGAGTA---AGAGCATAGCT 564 | | | || |||| ||| || | ||| | | ||||| |||||||| | Sbjct 525 GCGCACTCCCGCGACT--TCCAATTGACCTCGCTTCATTGGGAGTACGCAGAGCATAAAT 468 Query 565 GTTGGGACCCGAAAGATGGTGAACTATGCCTGAATAGGGTGAAGCCAGAGGAAACTCTGG 624 |||||||||||||||||||||||||||||||| ||| ||||| ||| |||||| ||| Sbjct 467 GTTGGGACCCGAAAGATGGTGAACTATGCCTGGCCAGGTTGAAGTCAGGGGAAACCCTGA 408 Query 625 TGGAGGCTCGCAGCGGTTCTGGCGTGCAAATCGATCGTCAAATTTGGGTATAGGGGCGA 683 |||||| || |||| ||||| ||||||||||||||||| | ||||||||||||||| Sbjct 407 TGGAGGACCGTAGCGATTCTGACGTGCAAATCGATCGTCGGAGCTGGGTATAGGGGCGA 349 >seq3123 Length=333 Score = 127 bits (140), Expect = 9e-27 Identities = 119/149 (80%), Gaps = 2/149 (1%) Strand=Plus/Plus Query 39 CGAGTCGAGTTGTTTGGGAATGCAGCTCTAAATGGGAGGTAAATTTCTTCTAAAGCTAAA 98 ||||||| |||| |||||| |||||| | || || |||||||| | || ||| ||||| Sbjct 112 CGAGTCGGGTTGCTTGGGAGTGCAGCCCAAAGTGTGAGGTAAACTCCTCATAAGCCTAAA 171 Query 99 TATTGGCCAGAGACCGATAGCGCACAAGTAGAGTGATCGAAAGA-TGAAAAGCACTTTGG 157 |||| || |||||||||||| ||||||| |||| || |||| ||||||| |||||| Sbjct 172 TATTACCCTGAGACCGATAGCAAACAAGTACGGTGA-CGGAAGATTGAAAAGAACTTTGA 230 Query 158 AAAGAGAGTTAAAAAGCACGTGAAATTGT 186 | |||||||| || || |||||||| ||| Sbjct 231 AGAGAGAGTTCAATAGTACGTGAAACTGT 259 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 2079914028400