Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Saccharomyces_20pastorianus_20[genbank_20GCA_5F001483335.1_202015- 12-30] 8,919 sequences; 28,078,724 total letters Query= AAMG01000538.1 Length=248 Score E Sequences producing significant alignments: (Bits) Value seq8708 78.8 1e-12 seq8043 77.0 5e-12 seq1759 73.4 5e-11 >seq8708 Length=2701 Score = 78.8 bits (86), Expect = 1e-12 Identities = 72/87 (83%), Gaps = 3/87 (3%) Strand=Plus/Minus Query 14 CACCGGGCAGGCGTCAGTCCGTATACATCGAC-TTACCGTCTTCGCACGGACCTGTGTTT 72 ||||||||||| ||||| || |||||||| || || || || ||| || ||||||||| Sbjct 1702 CACCGGGCAGGTGTCAGACCTTATACATCAACATTTAGGTTTTTGCAAGGTCCTGTGTTT 1643 Query 73 TTAGTAAACAGTCGCTTCCCT-CTATT 98 | |||||||||||| |||||| ||||| Sbjct 1642 TAAGTAAACAGTCG-TTCCCTACTATT 1617 >seq8043 Length=1063 Score = 77.0 bits (84), Expect = 5e-12 Identities = 68/84 (81%), Gaps = 1/84 (1%) Strand=Plus/Minus Query 140 TGGCACCCCTTCTCCCGAAGTTACGG-GGCCATTTTGCCGAATTCCTTAACCACAGTTCA 198 |||||| |||| |||||||||||||| | | |||||||| |||||||| | ||||| Sbjct 461 TGGCACTCCTTGTCCCGAAGTTACGGTAGTTAGTTTGCCGAGTTCCTTAATGATTGTTCA 402 Query 199 CCCGAACGCCTTAGTATTCTCTAC 222 | | |||||||| |||| |||||| Sbjct 401 CTCAAACGCCTTCGTATACTCTAC 378 >seq1759 Length=2292 Score = 73.4 bits (80), Expect = 5e-11 Identities = 72/92 (78%), Gaps = 1/92 (1%) Strand=Plus/Plus Query 157 AAGTTACGGGGCCATTTTGCCGAATTCCTTAACCACAGTTCACCCGAACGCCTTAGTATT 216 || ||||||| || |||||||| |||||| || | || | | | |||||||||||| Sbjct 677 AACTTACGGGCACAATTTGCCGAGTTCCTTCACAAGCATTATCTCTA-CGCCTTAGTATT 735 Query 217 CTCTACCTGACCACCTGTGTCGGTTTACGGTA 248 |||||||| ||||||||||||||| |||| Sbjct 736 CTCTACCTACGAACCTGTGTCGGTTTAGGGTA 767 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 694340001887