Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Saccharomyces_20pastorianus_20[genbank_20GCA_5F001483335.1_202015- 12-30] 8,919 sequences; 28,078,724 total letters Query= AAMG01001884.1 Length=191 Score E Sequences producing significant alignments: (Bits) Value seq7267 282 4e-74 seq2372 257 2e-66 seq926 257 2e-66 seq1957 244 1e-62 seq7184 192 6e-47 seq2520 150 2e-34 >seq7267 Length=1316 Score = 282 bits (312), Expect = 4e-74 Identities = 178/191 (93%), Gaps = 1/191 (1%) Strand=Plus/Plus Query 1 GGAACCAGGACTTTTACTTTGAAAAAATTAGAGCGTTCAAAGCAGGCCTTTGCTCGAATA 60 ||||||||||||||||||||||||||||||||| ||||||||||||||| |||||||||| Sbjct 730 GGAACCAGGACTTTTACTTTGAAAAAATTAGAGTGTTCAAAGCAGGCCTATGCTCGAATA 789 Query 61 CATTACCATGGAATAATAGAATAGGACGTGCGGTTCTATTTTGTAGGTTTCTAGGACCGC 120 ||||| ||||||||||| ||||||||||| ||||||||||||| |||||||||||||| Sbjct 790 CATTAGCATGGAATAATGAAATAGGACGTGTGGTTCTATTTTGTTGGTTTCTAGGACCG- 848 Query 121 CCGTAATGATAAATACGGATAGTCGGGGGTGTCAGTATTCAATTGTCAAAGGTGAAATTC 180 |||||||||| |||| ||||||||||||| ||||||||||||||||| ||||||||||| Sbjct 849 CCGTAATGATTAATAGGGATAGTCGGGGGCATCAGTATTCAATTGTCAGAGGTGAAATTC 908 Query 181 TTGGATTTATT 191 ||||||||||| Sbjct 909 TTGGATTTATT 919 >seq2372 Length=2111 Score = 257 bits (284), Expect = 2e-66 Identities = 173/191 (91%), Gaps = 2/191 (1%) Strand=Plus/Minus Query 2 GAACCAGGACTTTTACTTTGAAAAAATTAGAGCGTTCAAAGCAGGCCT-TTGCTCGAATA 60 |||||||||||||||||||||||||||||||| ||||||||||||| | ||||||||||| Sbjct 1702 GAACCAGGACTTTTACTTTGAAAAAATTAGAGTGTTCAAAGCAGGCGTATTGCTCGAATA 1643 Query 61 CATTACCATGGAATAATAGAATAGGACGTGCGGTTCTATTTTGTAGGTTTCTAGGACCGC 120 |||| ||||||||||||||||||||||| ||||||||||||| ||||||||||||| Sbjct 1642 TATTAGCATGGAATAATAGAATAGGACGTTTGGTTCTATTTTGTTGGTTTCTAGGACC-A 1584 Query 121 CCGTAATGATAAATACGGATAGTCGGGGGTGTCAGTATTCAATTGTCAAAGGTGAAATTC 180 ||||||||| |||| ||| |||||||| ||||||||||||||||| ||||||||||| Sbjct 1583 TCGTAATGATTAATAGGGACGGTCGGGGGCATCAGTATTCAATTGTCAGAGGTGAAATTC 1524 Query 181 TTGGATTTATT 191 ||||||||||| Sbjct 1523 TTGGATTTATT 1513 >seq926 Length=4954 Score = 257 bits (284), Expect = 2e-66 Identities = 173/191 (91%), Gaps = 2/191 (1%) Strand=Plus/Minus Query 2 GAACCAGGACTTTTACTTTGAAAAAATTAGAGCGTTCAAAGCAGGCCT-TTGCTCGAATA 60 |||||||||||||||||||||||||||||||| ||||||||||||| | ||||||||||| Sbjct 1091 GAACCAGGACTTTTACTTTGAAAAAATTAGAGTGTTCAAAGCAGGCGTATTGCTCGAATA 1032 Query 61 CATTACCATGGAATAATAGAATAGGACGTGCGGTTCTATTTTGTAGGTTTCTAGGACCGC 120 |||| ||||||||||||||||||||||| ||||||||||||| ||||||||||||| Sbjct 1031 TATTAGCATGGAATAATAGAATAGGACGTTTGGTTCTATTTTGTTGGTTTCTAGGACC-A 973 Query 121 CCGTAATGATAAATACGGATAGTCGGGGGTGTCAGTATTCAATTGTCAAAGGTGAAATTC 180 ||||||||| |||| ||| |||||||| ||||||||||||||||| ||||||||||| Sbjct 972 TCGTAATGATTAATAGGGACGGTCGGGGGCATCAGTATTCAATTGTCAGAGGTGAAATTC 913 Query 181 TTGGATTTATT 191 ||||||||||| Sbjct 912 TTGGATTTATT 902 >seq1957 Length=568 Score = 244 bits (270), Expect = 1e-62 Identities = 163/180 (91%), Gaps = 1/180 (1%) Strand=Plus/Plus Query 10 ACTTTTACTTTGAAAAAATTAGAGCGTTCAAAGCAGGCCTTTGCTCGAATACATTACCAT 69 || ||||||||||||||||||||| |||||||||||||||||||||||||| |||| ||| Sbjct 201 ACATTTACTTTGAAAAAATTAGAGTGTTCAAAGCAGGCCTTTGCTCGAATATATTAGCAT 260 Query 70 GGAATAATAGAATAGGACGTGCGGTTCTATTTTGTAGGTTTCTAGGACCGCCCGTAATGA 129 |||||||||||||||||||| ||||||||||||| |||||||||||||| |||||||| Sbjct 261 GGAATAATAGAATAGGACGTATGGTTCTATTTTGTTGGTTTCTAGGACCG-TCGTAATGA 319 Query 130 TAAATACGGATAGTCGGGGGTGTCAGTATTCAATTGTCAAAGGTGAAATTCTTGGATTTA 189 | |||| ||| |||||||| |||||||||| |||||| |||||||||||||||||||| Sbjct 320 TTAATAGGGACGGTCGGGGGCATCAGTATTCAGTTGTCAGAGGTGAAATTCTTGGATTTA 379 >seq7184 Length=1315 Score = 192 bits (212), Expect = 6e-47 Identities = 157/188 (84%), Gaps = 2/188 (1%) Strand=Plus/Plus Query 1 GGAACCAGGACTTTTACTTTGAAAAAATTAGAGCGTTCAAAGCAGGCCTTTG-CTCGAAT 59 |||||||||||| |||||||||||||||||||| |||||||||||||| | | | ||||| Sbjct 272 GGAACCAGGACTATTACTTTGAAAAAATTAGAGTGTTCAAAGCAGGCCATAGGCCCGAAT 331 Query 60 ACATTACCATGGAATAATAGAATAGGACGTGCGGTTCTATTTTGTAGGTTTCTAGGACCG 119 | |||| |||||||||| ||||||||||| ||||||||||||||| ||||||||| || | Sbjct 332 ATATTAGCATGGAATAACAGAATAGGACGAGCGGTTCTATTTTGTTGGTTTCTAGAACTG 391 Query 120 CCCGTAATGATAAATACGGATAGTCGGGGGTGTCAGTATTCAATTGTCAAAGGTGAAATT 179 |||||||||| || | ||| || |||| | | |||||| | | |||||||||| Sbjct 392 -CCGTAATGATTAACAGGGACAGCCGGGAGCATTAGTATTTGCACGCTAGAGGTGAAATT 450 Query 180 CTTGGATT 187 |||||||| Sbjct 451 CTTGGATT 458 >seq2520 Length=662 Score = 150 bits (166), Expect = 2e-34 Identities = 151/190 (79%), Gaps = 7/190 (4%) Strand=Plus/Minus Query 5 CCAGGACTT-TTACTTTGAAAAAATTAGAGCGTTCAAAGCAGGCCTTT---GCTCGAATA 60 |||||| | |||||||||||||||||||| ||||||||| ||| ||| || |||||| Sbjct 419 CCAGGAATGATTACTTTGAAAAAATTAGAGTGTTCAAAGCGGGCTTTTTAAGC-CGAATA 361 Query 61 CATTACCATGGAATAATAGAATAGGACGTGCGGTTCTATTTTGTAGGTTTCTAGGACCGC 120 ||||| |||||||||||| |||| ||| | |||| |||||||| ||||| || || Sbjct 360 CATTAGCATGGAATAATAAAATAAGAC-TATGGTTTTATTTTGTTGGTTTATAAAACTAA 302 Query 121 CCGTAATGATAAATACGGATAGTCGGGGGTGTCAGTATTCAATTGTCAAAGGTGAAATTC 180 | |||||| |||| | | || |||| | | |||||| ||| |||| ||||||||||| Sbjct 301 A-GAAATGATGAATAGGTCTGGTTGGGGATATTAGTATTTAATAGTCAGAGGTGAAATTC 243 Query 181 TTGGATTTAT 190 |||||||||| Sbjct 242 TTGGATTTAT 233 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 511955761760