Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Saccharomyces_20pastorianus_20[genbank_20GCA_5F001483335.1_202015- 12-30] 8,919 sequences; 28,078,724 total letters Query= NC_031903.1 Length=172345 Score E Sequences producing significant alignments: (Bits) Value seq8857 627 1e-174 seq7678 289 3e-73 seq7307 228 9e-55 seq7318 188 8e-43 >seq8857 Length=8770 Score = 627 bits (694), Expect = 1e-174 Identities = 716/959 (75%), Gaps = 2/959 (0%) Strand=Plus/Minus Query 159830 AACCGCCTCTATGTCGGTTGGTTCGGCGTCCTGATGATCCCAACTCTGTTGGCAGCAACT 159889 |||||||| || | || ||||| || || |||||||||| || | ||| | |||||| Sbjct 6403 AACCGCCTTTACATTGGATGGTTTGGTGTTTTGATGATCCCTACCTTATTGACCGCAACT 6344 Query 159890 ATCTGC-TTCATCGTCGCCTTCATCGCTGCTCCCCCTGTGGACATCGATGGCATCCGTGA 159948 |||| || ||| | |||||||| |||||||| || || || || ||||| || ||||| Sbjct 6343 -TCTGTATTTATCATAGCCTTCATTGCTGCTCCTCCAGTAGATATTGATGGTATTCGTGA 6285 Query 159949 ACCCGTCGCTGGTTCACTCATGTACGGTAACAACATCATCTCTGGTGCAGTTGTTCCCTC 160008 ||| || |||| || | | ||||| ||||| || ||||| ||||| || |||| | Sbjct 6284 ACCTGTTTCTGGATCTTTGCTTTACGGAAACAATATTATCTCCGGTGCCATTATTCCTAC 6225 Query 160009 TTCCAACGCAATTGGTCTTCACTTCTATCCCATTTGGGAAGCCGCATCGCTCGACGAGTG 160068 ||| || || ||| | ||||| ||||| || |||||||| ||||| | || || || Sbjct 6224 TTCTGCGGCTATCGGTTTGCACTTTTATCCAATATGGGAAGCGGCATCTGTTGATGAATG 6165 Query 160069 GCTCTATAACGGTGGTCCTTTCCAACTCGTAGTCTTCCACTTCCTGATCGGCATCTATGC 160128 | | || || |||||||||| | || | || | |||||| | | || | | Sbjct 6164 GTTATACAATGGTGGTCCTTATGAGCTAATTGTTCTACACTTCTTACTAGGTGTAGCTTG 6105 Query 160129 CTATATGGGTCGTGAGTGGGAACTCTCTTACCGTCTCGGTATGCGTCCCTGGATCTGTGT 160188 || |||||||||||||||||||| || |||||| |||||||| || ||||| ||| Sbjct 6104 TTACATGGGTCGTGAGTGGGAACTGAGTTTCCGTCTGGGTATGCGCCCTTGGATTGCTGT 6045 Query 160189 TGCATACTCTGCTCCAGTCGCTGCTGCTTCTGCTGTATTCCTCGTCTACCCCTTCGGTCA 160248 ||| || || ||||| || || |||||| ||||||| ||| | | ||||| | ||||| Sbjct 6044 TGCGTATTCAGCTCCTGTTGCAGCTGCTACTGCTGTTTTCTTGATTTACCCAATTGGTCA 5985 Query 160249 GGGTTCTTTCTCCGATGCTATGCCTCTTGGTATCTCTGGTACTTTTAACTATATGCTTGT 160308 || || || |||| ||||||||| || || ||||||||||| |||| |||| |||| Sbjct 5984 AGGAAGCTTTTCTGATGGTATGCCTCTAGGCATTTCTGGTACTTTCAACTTTATGATTGT 5925 Query 160309 ATTCCAAGCAGAACACAATATCCTTATGCATCCGTTCCACATGCTCGGTGTTGCTGGGGT 160368 |||||| || |||||||| ||||||||||| || || |||||| | ||||| ||||| || Sbjct 5924 ATTCCAGGCTGAACACAACATCCTTATGCACCCATTTCACATGTTAGGTGTAGCTGGTGT 5865 Query 160369 ATTCGGTGGATCTCTGTTCTCTGCTATGCATGGATCTCTGGTTACTTCTAGTCTCGTCAG 160428 ||| ||||| || || || |||||||||||| || |||| ||||||||| | |||| Sbjct 5864 ATTTGGTGGCTCCCTATTTAGTGCTATGCATGGTTCCTTGGTAACTTCTAGTTTGATCAG 5805 Query 160429 AGAGACGACAGAAACTGAGTCCCAGAACTATGGTTACAAGTTCGGTCAAGAGGAAGAGAC 160488 || || ||||||| ||| || || | |||||||| ||||||||||||||||| || Sbjct 5804 GGAAACTACAGAAAATGAATCTGCTAATGAAGGTTACAAATTCGGTCAAGAGGAAGAAAC 5745 Query 160489 TTACAACATCGTCGCAGCACATGGCTACTTCGGTCGTTTGATCTTCCAATATGCATCCTT 160548 ||| || || || || || ||||| || || || || |||||||||||||||||| || Sbjct 5744 TTATAATATTGTAGCTGCTCATGGTTATTTTGGCCGATTGATCTTCCAATATGCAAGTTT 5685 Query 160549 TAACAACTCACGCTCTCTGCACTTCTTCCTCGCTGCTTGGCCTGTTGTTGGAATCTGGTT 160608 |||||||| || ||| | || |||||| | ||||||||||| ||| | || || ||||| Sbjct 5684 CAACAACTCTCGTTCTTTACATTTCTTCTTAGCTGCTTGGCCCGTTATCGGTATTTGGTT 5625 Query 160609 CACTGCCCTTGGTGTTTCTACCATGGCATTCAATCTCAATGGTTTCAACTTCAACCAGTC 160668 ||||| | ||| || ||| ||||| |||||| | ||||||||||| ||||| || || Sbjct 5624 TACTGCTTTAGGTATTAGTACTATGGCTTTCAATTTAAATGGTTTCAATTTCAATCAATC 5565 Query 160669 CATCTTGGACAACCAAGGACAAGTTCTGAACACTTGGGCAGACGTGCTTAACCGCGCTGG 160728 | | || | ||||| | || | || || || || || | ||||||||||| Sbjct 5564 TGTAGTTGATAGTCAAGGTCGTGTAATTAATACCTGAGCTGATATCATTAACCGCGCTAA 5505 Query 160729 TCTGGGCATGGAAGTCATGCACGAGCGTAACGCTCACAACTTCCCTCTCGACCTTGCTG 160787 || || |||||||| ||||| || ||||| ||||| ||||||||||| ||||| |||| Sbjct 5504 CCTTGGTATGGAAGTTATGCATGAACGTAATGCTCATAACTTCCCTCTAGACCTAGCTG 5446 >seq7678 Length=557 Score = 289 bits (320), Expect = 3e-73 Identities = 321/428 (75%), Gaps = 0/428 (0%) Strand=Plus/Minus Query 160396 GCATGGATCTCTGGTTACTTCTAGTCTCGTCAGAGAGACGACAGAAACTGAGTCCCAGAA 160455 ||| || || |||||||||| | || | || || |||||||| || || || || Sbjct 552 GCACGGTTCCTTGGTTACTTCCTCCTTGGTACGTGAAACCACAGAAACCGAATCACAAAA 493 Query 160456 CTATGGTTACAAGTTCGGTCAAGAGGAAGAGACTTACAACATCGTCGCAGCACATGGCTA 160515 ||| |||||||||||||| ||||| ||||| || ||||||||||| || ||||| || || Sbjct 492 CTACGGTTACAAGTTCGGACAAGAAGAAGAAACCTACAACATCGTAGCTGCACACGGTTA 433 Query 160516 CTTCGGTCGTTTGATCTTCCAATATGCATCCTTTAACAACTCACGCTCTCTGCACTTCTT 160575 ||| ||||| |||||||||||||| || ||||| |||||| || || ||||||||||| Sbjct 432 CTTTGGTCGGTTGATCTTCCAATACGCTTCCTTCAACAACAGCCGTTCACTGCACTTCTT 373 Query 160576 CCTCGCTGCTTGGCCTGTTGTTGGAATCTGGTTCACTGCCCTTGGTGTTTCTACCATGGC 160635 | | ||||| ||||| || | || |||||||| || || | ||| | || ||||| Sbjct 372 CTTGGCTGCATGGCCAGTAATCGGTATCTGGTTTACCGCTTTAGGTATCAGCACAATGGC 313 Query 160636 ATTCAATCTCAATGGTTTCAACTTCAACCAGTCCATCTTGGACAACCAAGGACAAGTTCT 160695 ||||| || || || |||||||||||||| || | | || ||||| | || | Sbjct 312 GTTCAACCTGAACGGATTCAACTTCAACCAATCAGTAATCGATTCTCAAGGTCGCGTCAT 253 Query 160696 GAACACTTGGGCAGACGTGCTTAACCGCGCTGGTCTGGGCATGGAAGTCATGCACGAGCG 160755 |||||||| ||||| | ||||||||| |||| |||||||||||||||||||| Sbjct 252 CGCTACTTGGGCTGACGTAATCAACCGCGCTAACTTGGGTATGGAAGTCATGCACGAGCG 193 Query 160756 TAACGCTCACAACTTCCCTCTCGACCTTGCTGCTGCTGAGTCAACTCCTGTTGCACTCAT 160815 |||||||||||||||||| | ||| | ||||||| ||| ||||||| || | | Sbjct 192 TAACGCTCACAACTTCCCCTTAGACTTGGCTGCTGGTGAAGTTGCTCCTGTGGCTTTAAC 133 Query 160816 CGCACCTG 160823 ||||||| Sbjct 132 TGCACCTG 125 >seq7307 Length=548 Score = 228 bits (252), Expect = 9e-55 Identities = 332/469 (71%), Gaps = 0/469 (0%) Strand=Plus/Plus Query 162059 TCCACATGATGGGTGTCGCAGGTATCTTGGGTGGTGCTTTGCTCTCTGCTATTCACGGTG 162118 ||||||||||||| || || ||| | | ||||| || | | | ||| |||||||| | Sbjct 1 TCCACATGATGGGAGTAGCGGGTGTACTCGGTGGAGCGCTATTGTGTGCCATTCACGGAG 60 Query 162119 TGACTGTTGAAAACACGCTCTACCAAGATGGTGAACAAGCAAATACTTTCAAGGCTTTTG 162178 || || |||||||| | | |||| |||||| | | || || ||| || || Sbjct 61 CCACAGTAGAAAACACCTTATTTGAAGACGGTGAAGCATCCAAAACCTTCCGCGCCTTCA 120 Query 162179 ACTCTACGCAAGAGGAGGAGACTTACTCGATGGTTACTGCGAACCGTTTCTGGTCACAGA 162238 ||| || |||| || || || ||||| ||||| || |||||||| ||||||||||||| Sbjct 121 ACTACACCCAAGCAGAAGAAACCTACTCCATGGTGACAGCGAACCGATTCTGGTCACAGA 180 Query 162239 TCTTCGGTATTGCTTTTAGTAATAAGCGTTGGTTGCATTTCTTTATGCTCTTCGTTCCCG 162298 | |||||||| || || || || || ||||| || ||||| ||||| || || || | Sbjct 181 TATTCGGTATCGCCTTCTCCAACAAACGGTGGTTACACTTCTTCATGCTGTTTGTACCAG 240 Query 162299 TCATGGGTCTCTGGACAAGTTCTATCGGTATTATTGGACTCGCTCTTAATCTTCGTGCTT 162358 ||| || | |||| || | || || | || | || | || || || |||| Sbjct 241 TCACAGGCTTGTGGATGGCGTCAGTAGGAATCGTGGGTTTAGCATTGAACCTCCGGGCTT 300 Query 162359 ACGACTTTGTATCTCAGGAGATTCGTGCAGCGGAGGATCCTGAATTTGAAACCTTCTACA 162418 ||||||| ||||| || || | || ||||| || || || ||||||||||| ||||| | Sbjct 301 ACGACTTCGTATCCCAAGAATTGCGGGCAGCAGAAGACCCAGAATTTGAAACATTCTATA 360 Query 162419 CCAAGAATATCCTCTTGAATGAAGGTCTTCGTGCATGGTTGGCACCAGTTGATCAACCGC 162478 |||| || || | |||| || ||| | || || ||| |||| || ||||| || | Sbjct 361 CCAAAAACATTTTGCTGAACGAGGGTATCCGCGCTTGGATGGCTCCTCAAGATCAGCCTC 420 Query 162479 ATGAGAACTTTGTATTCCCTGAGGAAGTTCTGCCTAGAGGTAACGCACT 162527 | || | ||||||||||| ||||| ||||| ||| | |||||||| || Sbjct 421 ACGAACAATTTGTATTCCCAGAGGAGGTTCTACCTCGTGGTAACGCTCT 469 >seq7318 Length=447 Score = 188 bits (208), Expect = 8e-43 Identities = 244/336 (73%), Gaps = 1/336 (0%) Strand=Plus/Plus Query 161896 AATGCTATTGCTTTCTCTGGTCCTATTGCTGTTTTTGTCAGCGTCTTTCTCATATATCCT 161955 ||||| || || || |||||||| |||||||||||||| || ||||| || ||||| Sbjct 1 AATGCAATCGCATTTTCTGGTCCAATTGCTGTTTTTGTTTCTGTATTTCTAATTTATCCA 60 Query 161956 CTGGGACAGTCGTCCTGGTTCTTCGCGCCATCGTTTGGGGTTGCCGCTATTTTCAGGTTC 162015 ||||| ||| | ||||| || ||||| ||||| || || ||||| || | ||| Sbjct 61 CTGGGTCAGGCTGGTTGGTTTTTTGCGCCTAGTTTTGGTGTAGCAGCTATATTTCGCTTC 120 Query 162016 TTACTTTTCCTACAAGGTTTCCACAATTGGACGCTTAATCCGTTCCACATGATGGGTGTC 162075 | || || | ||||| || || |||||||| | || || || || |||||||| || Sbjct 121 ATCCTATTTTTTCAAGGGTTTCATAATTGGACCTTGAACCCATTTCATATGATGGGAGTT 180 Query 162076 GCAGGTATCTTGGGTGGTGCTTTGCTCTCTGCTATTCACGGTGTGACTGTTGAAAACACG 162135 || ||| | ||||| | || |||| | |||||||| |||| ||| || ||||| || Sbjct 181 GCCGGTGTATTGGGCGCCGCCCTGCTATGCGCTATTCATGGTGCGACGGTAGAAAATACT 240 Query 162136 CTCTACCAAGATGGTGAACAAGCAAATACTTTCAAGGCTTTTGACTCTACGCAAGAGGAG 162195 | | |||||||||| |||||||| ||| ||||||| || | || |||| || Sbjct 241 TTATTTGAAGATGGTGATGGTGCAAATACATTCCGGGCTTTTAACCCAACTCAAGCTGAA 300 Query 162196 GAGACTTACTCGATGGTTACTGCGAACCG-TTTCTG 162230 || ||||| || ||||| ||||| ||||| |||||| Sbjct 301 GAAACTTATTCAATGGTCACTGCTAACCGCTTTCTG 336 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 551314528468200