Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Saccharomyces_20pastorianus_20[genbank_20GCA_5F001483345.1_202015- 12-30] 9,492 sequences; 32,325,519 total letters Query= AAMG01001962.1 Length=275 Score E Sequences producing significant alignments: (Bits) Value seq9492 325 6e-87 seq9490 325 6e-87 seq9489 325 6e-87 >seq9492 Length=3813 Score = 325 bits (360), Expect = 6e-87 Identities = 233/268 (87%), Gaps = 0/268 (0%) Strand=Plus/Minus Query 8 GGCTTCGGGCTTAGATGCCTTCAGCTCTTATCCCTTCCAAACTTAGCTTCCCAGCTATGC 67 |||||| |||||||||| |||||| ||||||||||| ||| |||| ||||| ||| Sbjct 3419 GGCTTCCCGCTTAGATGCTTTCAGCGGTTATCCCTTCCGAACGTAGCCAACCAGCGGTGC 3360 Query 68 ACTTGGCAGTACAACTGGTGCACCAGAGGTTTGTCCATCCCGGTCCTCTCGTACTAAGGA 127 | |||| | |||||||| ||||||||||| |||| ||||||||||||||||||| ||| Sbjct 3359 TCCTGGCGGAACAACTGGCACACCAGAGGTTCGTCCGTCCCGGTCCTCTCGTACTAGGGA 3300 Query 128 CAGCTCCTCTCAAATTTCCTACGCCCACGACGGATAGGGACCGAACTGTCTCGCGACGTT 187 |||| | |||||| |||||| ||| | | |||||||||||||||||||||| ||||||| Sbjct 3299 CAGCCCTTCTCAAGTTTCCTGCGCGCGCAGCGGATAGGGACCGAACTGTCTCACGACGTT 3240 Query 188 CTGAACCCAGCTCGCGTGCCTCTTTAATGGGCGAACAGCCCAACCCTTGGGACCTACTTC 247 || |||||||||||||| || ||||||||||||||||||||||||||||||||||||| | Sbjct 3239 CTAAACCCAGCTCGCGTACCGCTTTAATGGGCGAACAGCCCAACCCTTGGGACCTACTCC 3180 Query 248 AGCCCCAGGATGAGACGAGCCGACATCG 275 |||||||||||| ||||||||||||||| Sbjct 3179 AGCCCCAGGATGCGACGAGCCGACATCG 3152 >seq9490 Length=3813 Score = 325 bits (360), Expect = 6e-87 Identities = 233/268 (87%), Gaps = 0/268 (0%) Strand=Plus/Plus Query 8 GGCTTCGGGCTTAGATGCCTTCAGCTCTTATCCCTTCCAAACTTAGCTTCCCAGCTATGC 67 |||||| |||||||||| |||||| ||||||||||| ||| |||| ||||| ||| Sbjct 394 GGCTTCCCGCTTAGATGCTTTCAGCGGTTATCCCTTCCGAACGTAGCCAACCAGCGGTGC 453 Query 68 ACTTGGCAGTACAACTGGTGCACCAGAGGTTTGTCCATCCCGGTCCTCTCGTACTAAGGA 127 | |||| | |||||||| ||||||||||| |||| ||||||||||||||||||| ||| Sbjct 454 TCCTGGCGGAACAACTGGCACACCAGAGGTTCGTCCGTCCCGGTCCTCTCGTACTAGGGA 513 Query 128 CAGCTCCTCTCAAATTTCCTACGCCCACGACGGATAGGGACCGAACTGTCTCGCGACGTT 187 |||| | |||||| |||||| ||| | | |||||||||||||||||||||| ||||||| Sbjct 514 CAGCCCTTCTCAAGTTTCCTGCGCGCGCAGCGGATAGGGACCGAACTGTCTCACGACGTT 573 Query 188 CTGAACCCAGCTCGCGTGCCTCTTTAATGGGCGAACAGCCCAACCCTTGGGACCTACTTC 247 || |||||||||||||| || ||||||||||||||||||||||||||||||||||||| | Sbjct 574 CTAAACCCAGCTCGCGTACCGCTTTAATGGGCGAACAGCCCAACCCTTGGGACCTACTCC 633 Query 248 AGCCCCAGGATGAGACGAGCCGACATCG 275 |||||||||||| ||||||||||||||| Sbjct 634 AGCCCCAGGATGCGACGAGCCGACATCG 661 >seq9489 Length=379987 Score = 325 bits (360), Expect = 6e-87 Identities = 233/268 (87%), Gaps = 0/268 (0%) Strand=Plus/Minus Query 8 GGCTTCGGGCTTAGATGCCTTCAGCTCTTATCCCTTCCAAACTTAGCTTCCCAGCTATGC 67 |||||| |||||||||| |||||| ||||||||||| ||| |||| ||||| ||| Sbjct 3419 GGCTTCCCGCTTAGATGCTTTCAGCGGTTATCCCTTCCGAACGTAGCCAACCAGCGGTGC 3360 Query 68 ACTTGGCAGTACAACTGGTGCACCAGAGGTTTGTCCATCCCGGTCCTCTCGTACTAAGGA 127 | |||| | |||||||| ||||||||||| |||| ||||||||||||||||||| ||| Sbjct 3359 TCCTGGCGGAACAACTGGCACACCAGAGGTTCGTCCGTCCCGGTCCTCTCGTACTAGGGA 3300 Query 128 CAGCTCCTCTCAAATTTCCTACGCCCACGACGGATAGGGACCGAACTGTCTCGCGACGTT 187 |||| | |||||| |||||| ||| | | |||||||||||||||||||||| ||||||| Sbjct 3299 CAGCCCTTCTCAAGTTTCCTGCGCGCGCAGCGGATAGGGACCGAACTGTCTCACGACGTT 3240 Query 188 CTGAACCCAGCTCGCGTGCCTCTTTAATGGGCGAACAGCCCAACCCTTGGGACCTACTTC 247 || |||||||||||||| || ||||||||||||||||||||||||||||||||||||| | Sbjct 3239 CTAAACCCAGCTCGCGTACCGCTTTAATGGGCGAACAGCCCAACCCTTGGGACCTACTCC 3180 Query 248 AGCCCCAGGATGAGACGAGCCGACATCG 275 |||||||||||| ||||||||||||||| Sbjct 3179 AGCCCCAGGATGCGACGAGCCGACATCG 3152 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 780728202512